Wall clock time and date at job start Wed Apr 1 2020 03:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35909 * 117.00176 * 2 1 4 4 C 1.38755 * 120.05184 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94445 * 179.97438 * 4 3 2 6 6 C 1.38294 * 120.05005 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.93924 * 180.02562 * 6 5 4 8 8 C 1.38250 * 120.11383 * 359.75070 * 6 5 4 9 9 C 1.38164 * 120.05440 * 0.50456 * 8 6 5 10 10 C 1.50698 * 120.02779 * 179.77423 * 9 8 6 11 11 C 1.50707 * 109.46749 * 264.72175 * 10 9 8 12 12 O 1.21275 * 120.00016 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99433 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99358 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46678 * 179.97438 * 14 13 11 16 16 H 1.08999 * 110.64073 * 51.86599 * 15 14 13 17 17 C 1.54329 * 110.85248 * 288.69107 * 15 14 13 18 18 N 1.47019 * 107.26641 * 219.67101 * 17 15 14 19 19 C 1.36945 * 125.64869 * 178.84835 * 18 17 15 20 20 H 1.08000 * 119.99441 * 359.72211 * 19 18 17 21 21 C 1.38811 * 120.00031 * 179.72068 * 19 18 17 22 22 N 1.31619 * 120.00283 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99811 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47177 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46857 * 120.00139 * 23 21 19 26 26 H 1.48492 * 109.47220 * 239.99987 * 23 21 19 27 27 C 1.47426 * 108.70491 * 358.59050 * 18 17 15 28 28 C 1.54910 * 104.83073 * 24.35098 * 27 18 17 29 29 H 1.09005 * 111.00236 * 81.10632 * 28 27 18 30 30 C 1.52999 * 111.00400 * 204.91488 * 28 27 18 31 31 H 1.08999 * 109.46957 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46603 * 299.99944 * 1 2 3 33 33 H 1.08999 * 109.47240 * 60.00008 * 1 2 3 34 34 H 1.08004 * 120.02635 * 359.97438 * 4 3 2 35 35 H 1.07992 * 119.97419 * 180.02562 * 5 4 3 36 36 H 1.08992 * 109.47173 * 90.00361 * 7 6 5 37 37 H 1.09007 * 109.47019 * 210.00214 * 7 6 5 38 38 H 1.08994 * 109.47225 * 329.99977 * 7 6 5 39 39 H 1.07995 * 119.96867 * 180.25280 * 8 6 5 40 40 H 1.08993 * 109.47294 * 144.72516 * 10 9 8 41 41 H 1.09000 * 109.47116 * 24.71874 * 10 9 8 42 42 H 0.97002 * 120.00830 * 0.02562 * 13 11 10 43 43 H 1.08993 * 109.46929 * 60.00488 * 14 13 11 44 44 H 1.09000 * 109.47155 * 300.00044 * 14 13 11 45 45 H 1.09003 * 109.99010 * 100.19995 * 17 15 14 46 46 H 1.08999 * 109.78366 * 339.03505 * 17 15 14 47 47 H 0.96998 * 120.00243 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.36613 * 143.19006 * 27 18 17 49 49 H 1.08998 * 110.36249 * 265.40535 * 27 18 17 50 50 H 1.09003 * 109.46828 * 58.55105 * 30 28 27 51 51 H 1.09002 * 109.47003 * 178.54292 * 30 28 27 52 52 H 1.09001 * 109.47186 * 298.55016 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3020 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 6 4.0560 2.5171 0.0068 9 6 3.4312 1.2848 0.0010 10 6 4.2537 0.0221 0.0015 11 6 4.4247 -0.4666 -1.4139 12 8 3.9272 0.1496 -2.3323 13 7 5.1305 -1.5883 -1.6587 14 6 5.2962 -2.0636 -3.0346 15 6 6.1326 -3.3448 -3.0342 16 1 5.7195 -4.0731 -2.3363 17 6 7.6063 -3.0387 -2.6934 18 7 8.4395 -3.8867 -3.5585 19 6 9.8086 -3.9003 -3.5828 20 1 10.3668 -3.2454 -2.9303 21 6 10.4789 -4.7560 -4.4462 22 7 9.7986 -5.5539 -5.2418 23 14 12.3465 -4.7741 -4.4800 24 1 12.8689 -3.7907 -3.4975 25 1 12.8347 -6.1317 -4.1281 26 1 12.8205 -4.4149 -5.8406 27 6 7.5569 -4.7242 -4.3909 28 6 6.2212 -3.9430 -4.4631 29 1 6.2695 -3.1551 -5.2148 30 6 5.0481 -4.8864 -4.7365 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 0.2128 2.3203 0.0005 35 1 1.3340 4.5114 0.0019 36 1 4.1507 5.3415 1.0306 37 1 4.9442 4.9386 -0.5108 38 1 3.3583 5.7466 -0.5108 39 1 5.1344 2.5752 0.0113 40 1 3.7465 -0.7417 0.5908 41 1 5.2323 0.2262 0.4361 42 1 5.5282 -2.0813 -0.9241 43 1 5.8028 -1.2997 -3.6243 44 1 4.3176 -2.2682 -3.4687 45 1 7.8027 -3.2710 -1.6466 46 1 7.8194 -1.9877 -2.8882 47 1 10.2669 -6.1515 -5.8454 48 1 7.9795 -4.8460 -5.3883 49 1 7.4047 -5.6967 -3.9228 50 1 4.9954 -5.6382 -3.9490 51 1 4.1198 -4.3156 -4.7565 52 1 5.1935 -5.3776 -5.6986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102129708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:09 Heat of formation + Delta-G solvation = -58.973710 kcal Electronic energy + Delta-G solvation = -30224.774616 eV Core-core repulsion = 26188.796455 eV Total energy + Delta-G solvation = -4035.978161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.46926 -40.50900 -39.47809 -38.53839 -36.02447 -34.65126 -34.21812 -32.56027 -32.49762 -30.98244 -28.90383 -28.70210 -27.74756 -26.73303 -26.40927 -24.48485 -23.08371 -22.24506 -21.50408 -21.36507 -20.57818 -18.96436 -18.84582 -17.98845 -17.47835 -17.29143 -16.75940 -16.54386 -16.34251 -15.93738 -15.64139 -15.55985 -15.23469 -14.81726 -14.74226 -14.65039 -14.37474 -14.34536 -14.14252 -13.94570 -13.52079 -13.39452 -13.26849 -13.00160 -12.96733 -12.83684 -12.77197 -12.69369 -12.62474 -12.46364 -12.21135 -11.93692 -11.84265 -11.73449 -11.69223 -11.58955 -11.41075 -11.26308 -10.84257 -10.73903 -10.03640 -9.78394 -8.90384 -8.87224 -7.76919 -5.21272 0.36116 0.49940 1.46304 1.47227 1.57496 1.72985 2.25609 2.42034 2.49431 2.85055 3.32372 3.63698 3.68155 3.77639 3.85980 3.90521 3.98067 4.00997 4.09977 4.23105 4.34230 4.38787 4.39221 4.44809 4.47804 4.50978 4.59402 4.63993 4.69849 4.75564 4.76526 4.80549 4.83136 4.86857 4.88974 4.99006 5.09466 5.12401 5.17331 5.22112 5.35682 5.38440 5.40224 5.46084 5.48023 5.52647 5.70069 5.72651 5.85137 5.91155 6.32410 6.47456 6.62972 7.11765 7.32568 7.79514 8.43281 9.24911 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.002123 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.604795 B =13186.935288 C =14473.314811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C 0.117 3.883 4 C -0.213 4.213 5 C -0.088 4.088 6 C -0.135 4.135 7 C -0.107 4.107 8 C -0.085 4.085 9 C -0.114 4.114 10 C -0.087 4.087 11 C 0.516 3.484 12 O -0.582 6.582 13 N -0.719 5.719 14 C 0.147 3.853 15 C -0.088 4.088 16 H 0.095 0.905 17 C 0.139 3.861 18 N -0.630 5.630 19 C -0.237 4.237 20 H 0.080 0.920 21 C -0.069 4.069 22 N -0.949 5.949 23 Si 0.979 3.021 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.162 3.838 28 C -0.102 4.102 29 H 0.063 0.937 30 C -0.127 4.127 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.414 0.586 43 H 0.047 0.953 44 H 0.069 0.931 45 H 0.030 0.970 46 H 0.019 0.981 47 H 0.246 0.754 48 H 0.068 0.932 49 H -0.009 1.009 50 H 0.057 0.943 51 H 0.070 0.930 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.207 15.511 14.807 29.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.247 6.247 3 C 0.072 3.928 4 C -0.231 4.231 5 C -0.106 4.106 6 C -0.135 4.135 7 C -0.163 4.163 8 C -0.103 4.103 9 C -0.115 4.115 10 C -0.127 4.127 11 C 0.304 3.696 12 O -0.461 6.461 13 N -0.371 5.371 14 C 0.023 3.977 15 C -0.107 4.107 16 H 0.114 0.886 17 C 0.013 3.987 18 N -0.355 5.355 19 C -0.366 4.366 20 H 0.098 0.902 21 C -0.262 4.262 22 N -0.599 5.599 23 Si 0.808 3.192 24 H -0.191 1.191 25 H -0.218 1.218 26 H -0.219 1.219 27 C 0.037 3.963 28 C -0.122 4.122 29 H 0.082 0.918 30 C -0.184 4.184 31 H 0.132 0.868 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.154 0.846 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.250 0.750 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.037 0.963 47 H 0.056 0.944 48 H 0.086 0.914 49 H 0.009 0.991 50 H 0.076 0.924 51 H 0.089 0.911 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.304 15.660 14.072 29.249 hybrid contribution 1.153 -0.553 -0.148 1.287 sum -19.151 15.107 13.924 28.087 Atomic orbital electron populations 1.23275 0.76847 1.05259 1.01963 1.86019 1.23099 1.26985 1.88637 1.19009 0.92038 0.84926 0.96806 1.21448 1.00899 0.92124 1.08641 1.21130 0.94149 0.97669 0.97681 1.20129 0.94110 0.96253 1.02998 1.20743 1.00309 0.92293 1.02976 1.20992 1.00391 0.90791 0.98122 1.18866 0.90756 0.95246 1.06653 1.20504 1.02705 0.96353 0.93098 1.21026 0.76917 0.79789 0.91918 1.90675 1.49834 1.57693 1.47930 1.45965 1.54523 1.27028 1.09568 1.21110 0.99131 0.94162 0.83297 1.22323 0.93908 0.96346 0.98106 0.88634 1.21502 0.90052 0.93442 0.93654 1.44839 1.01680 1.44848 1.44182 1.19485 0.81786 1.17704 1.17583 0.90221 1.25638 1.02584 0.98824 0.99116 1.70067 1.34215 1.27865 1.27722 0.84989 0.79766 0.77225 0.77236 1.19101 1.21848 1.21947 1.21748 0.87338 0.90371 0.96796 1.22435 0.96173 0.98159 0.95422 0.91850 1.21595 0.96506 0.98655 1.01676 0.86769 0.91156 0.92666 0.83692 0.83631 0.90184 0.91677 0.90771 0.84581 0.86351 0.85572 0.74983 0.93441 0.91316 0.95161 0.96267 0.94381 0.91396 0.99070 0.92433 0.91069 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -7.34 9.63 -92.53 -0.89 -8.23 16 3 C 0.12 2.71 6.66 22.51 0.15 2.86 16 4 C -0.21 -4.08 9.04 22.37 0.20 -3.87 16 5 C -0.09 -1.56 9.69 22.26 0.22 -1.34 16 6 C -0.13 -2.53 5.88 -19.85 -0.12 -2.64 16 7 C -0.11 -1.40 10.01 71.24 0.71 -0.69 16 8 C -0.08 -1.80 9.33 22.25 0.21 -1.59 16 9 C -0.11 -2.65 4.39 -19.77 -0.09 -2.74 16 10 C -0.09 -1.76 5.55 29.10 0.16 -1.59 16 11 C 0.52 14.10 7.82 87.66 0.69 14.79 16 12 O -0.58 -21.17 16.03 -3.01 -0.05 -21.22 16 13 N -0.72 -17.83 5.47 -463.05 -2.53 -20.36 16 14 C 0.15 4.33 5.02 86.38 0.43 4.77 16 15 C -0.09 -2.83 2.42 -9.60 -0.02 -2.85 16 16 H 0.10 2.77 8.01 -2.39 -0.02 2.75 16 17 C 0.14 5.57 6.76 86.73 0.59 6.15 16 18 N -0.63 -32.65 3.39 -691.97 -2.35 -35.00 16 19 C -0.24 -13.39 10.27 84.03 0.86 -12.53 16 20 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 21 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 22 N -0.95 -57.10 10.09 21.65 0.22 -56.88 16 23 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 27 C 0.16 8.02 5.35 86.86 0.47 8.49 16 28 C -0.10 -3.76 3.09 -9.40 -0.03 -3.79 16 29 H 0.06 2.44 8.05 -2.38 -0.02 2.42 16 30 C -0.13 -3.77 9.29 71.98 0.67 -3.10 16 31 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 33 H 0.05 0.72 7.66 -2.39 -0.02 0.70 16 34 H 0.15 2.04 6.30 -2.91 -0.02 2.02 16 35 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.86 8.09 -2.38 -0.02 0.84 16 38 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 39 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.12 2.03 7.69 -2.39 -0.02 2.01 16 41 H 0.13 1.84 8.05 -2.39 -0.02 1.83 16 42 H 0.41 8.06 8.47 -92.71 -0.79 7.27 16 43 H 0.05 1.61 7.94 -2.39 -0.02 1.59 16 44 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 46 H 0.02 0.80 7.69 -2.39 -0.02 0.78 16 47 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 48 H 0.07 3.88 5.87 -2.39 -0.01 3.87 16 49 H -0.01 -0.46 8.04 -2.39 -0.02 -0.47 16 50 H 0.06 1.64 8.11 -2.39 -0.02 1.62 16 51 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -76.58 418.20 3.22 -73.36 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.12 Total: 22.01 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 6.68 Total: -1.79 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -4.66 Total: -112.24 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.94 Total: -29.45 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -76.58 3.22 -73.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102129708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.383 kcal (2) G-P(sol) polarization free energy of solvation -76.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds