Wall clock time and date at job start Wed Apr 1 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38283 * 119.94636 * 2 1 4 4 C 1.38123 * 120.05813 * 179.74265 * 3 2 1 5 5 C 1.38755 * 119.93987 * 0.50914 * 4 3 2 6 6 O 1.35904 * 120.05691 * 179.74487 * 5 4 3 7 7 C 1.42904 * 116.99713 * 359.72321 * 6 5 4 8 8 C 1.53000 * 109.47138 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47260 * 180.02562 * 8 7 6 10 10 O 1.21288 * 119.99891 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00110 * 180.02562 * 9 8 7 12 12 C 1.48207 * 119.96907 * 180.02562 * 11 9 8 13 13 C 1.47136 * 110.34354 * 102.47137 * 12 11 9 14 14 C 1.53789 * 111.84457 * 58.29499 * 13 12 11 15 15 N 1.43465 * 107.95825 * 281.67085 * 14 13 12 16 16 C 1.36944 * 118.93846 * 273.60773 * 15 14 13 17 17 H 1.08000 * 119.99821 * 24.61982 * 16 15 14 18 18 C 1.38805 * 120.00011 * 204.62172 * 16 15 14 19 19 N 1.31621 * 119.99891 * 203.00951 * 18 16 15 20 20 Si 1.86805 * 120.00190 * 23.00689 * 18 16 15 21 21 H 1.48500 * 109.47330 * 265.74629 * 20 18 16 22 22 H 1.48496 * 109.47260 * 145.74620 * 20 18 16 23 23 H 1.48498 * 109.47188 * 25.74356 * 20 18 16 24 24 C 1.48859 * 122.12251 * 93.88897 * 15 14 13 25 25 C 1.43619 * 119.96666 * 359.97438 * 11 9 8 26 26 C 1.38707 * 119.88896 * 359.46802 * 5 4 3 27 27 C 1.38164 * 119.94684 * 0.27726 * 26 5 4 28 28 C 1.50699 * 119.97549 * 180.02562 * 27 26 5 29 29 H 1.09002 * 109.47232 * 270.02729 * 1 2 3 30 30 H 1.09003 * 109.46815 * 30.02356 * 1 2 3 31 31 H 1.08997 * 109.47063 * 150.02069 * 1 2 3 32 32 H 1.08000 * 119.97122 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.03372 * 180.27477 * 4 3 2 34 34 H 1.09001 * 109.46872 * 59.99854 * 7 6 5 35 35 H 1.09003 * 109.47320 * 300.00329 * 7 6 5 36 36 H 1.09002 * 109.46647 * 60.00006 * 8 7 6 37 37 H 1.08994 * 109.47016 * 300.00352 * 8 7 6 38 38 H 1.08997 * 109.32692 * 342.19653 * 12 11 9 39 39 H 1.09005 * 109.18498 * 222.64715 * 12 11 9 40 40 H 1.09001 * 109.00324 * 297.68618 * 13 12 11 41 41 H 1.09000 * 108.94712 * 178.86542 * 13 12 11 42 42 H 1.08997 * 109.76815 * 162.05216 * 14 13 12 43 43 H 1.09006 * 109.80641 * 41.30596 * 14 13 12 44 44 H 0.96998 * 119.99910 * 5.15680 * 19 18 16 45 45 H 1.08995 * 109.48053 * 80.34635 * 24 15 14 46 46 H 1.09000 * 109.48016 * 200.38205 * 24 15 14 47 47 H 1.09003 * 108.87915 * 31.46748 * 25 11 9 48 48 H 1.09004 * 108.87092 * 150.00858 * 25 11 9 49 49 H 1.08000 * 120.02720 * 180.29975 * 26 5 4 50 50 H 1.08994 * 109.47194 * 89.99813 * 28 27 26 51 51 H 1.09002 * 109.47037 * 210.00297 * 28 27 26 52 52 H 1.08998 * 109.46788 * 329.99817 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 0.0054 5 6 4.2734 -0.0001 0.0001 6 8 5.6325 -0.0002 0.0001 7 6 6.2813 1.2731 -0.0004 8 6 7.7981 1.0726 -0.0009 9 6 8.4823 2.4153 -0.0009 10 8 7.8217 3.4326 -0.0009 11 7 9.8282 2.4858 -0.0018 12 6 10.5003 3.8067 -0.0011 13 6 10.9988 4.1263 1.3458 14 6 11.9807 3.0604 1.8604 15 7 11.2147 1.9341 2.3110 16 6 10.7407 1.9265 3.5958 17 1 10.5827 2.8582 4.1186 18 6 10.4633 0.7213 4.2260 19 7 9.6157 0.6846 5.2323 20 14 11.2930 -0.8487 3.6460 21 1 10.4124 -1.5436 2.6729 22 1 11.5417 -1.7364 4.8102 23 1 12.5845 -0.5143 2.9938 24 6 10.9238 0.7708 1.4290 25 6 10.6097 1.2809 -0.0023 26 6 3.5787 -1.2006 0.0006 27 6 2.1970 -1.1980 0.0005 28 6 1.4416 -2.5019 0.0017 29 1 -0.3634 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6560 2.1327 -0.0004 33 1 4.1172 2.1370 0.0099 34 1 5.9883 1.8305 0.8893 35 1 5.9884 1.8298 -0.8906 36 1 8.0905 0.5154 -0.8910 37 1 8.0912 0.5158 0.8890 38 1 9.7909 4.5726 -0.3144 39 1 11.3372 3.7832 -0.6992 40 1 10.1536 4.1908 2.0311 41 1 11.5056 5.0909 1.3160 42 1 12.5633 3.4648 2.6881 43 1 12.6483 2.7536 1.0551 44 1 9.1286 1.4843 5.4855 45 1 11.7902 0.1101 1.4011 46 1 10.0634 0.2262 1.8177 47 1 10.0631 0.5063 -0.5403 48 1 11.5507 1.4712 -0.5186 49 1 4.1173 -2.1367 0.0014 50 1 1.2595 -2.8154 1.0295 51 1 0.4894 -2.3706 -0.5124 52 1 2.0296 -3.2628 -0.5115 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196072607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:33 Heat of formation + Delta-G solvation = -25.946815 kcal Electronic energy + Delta-G solvation = -31105.731460 eV Core-core repulsion = 27071.185453 eV Total energy + Delta-G solvation = -4034.546007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.37192 -39.89282 -38.06544 -37.22194 -34.44316 -33.34854 -32.77971 -32.28751 -31.48874 -30.95937 -27.90550 -27.58914 -26.14913 -25.93333 -24.35795 -23.18895 -22.35279 -21.76641 -20.43160 -19.88825 -18.75683 -17.95208 -17.29565 -16.73605 -16.32065 -16.16041 -15.90432 -15.33098 -15.22089 -14.76193 -14.48592 -14.27499 -14.07848 -13.96937 -13.74666 -13.41067 -13.28386 -13.04088 -12.96566 -12.94824 -12.66771 -12.48362 -12.38599 -12.12470 -12.06682 -11.65815 -11.61886 -11.47016 -11.39568 -11.32702 -11.00262 -10.74560 -10.54097 -10.45812 -10.33187 -10.03405 -9.75032 -9.53980 -9.21112 -8.84666 -8.56367 -8.27139 -8.03720 -6.99997 -6.33741 -3.31242 1.26720 1.38516 2.81182 2.98825 3.35300 3.49159 3.58776 3.63865 3.66527 4.57318 4.66738 4.68924 4.76732 4.86156 4.89077 4.96046 5.01779 5.05669 5.11537 5.25677 5.28940 5.33817 5.34066 5.42202 5.45016 5.50444 5.51180 5.57585 5.66043 5.67412 5.72808 5.76348 5.76907 5.84139 5.88964 5.95945 6.00304 6.02398 6.23893 6.27869 6.28899 6.36957 6.40582 6.46927 6.56982 6.66414 6.76263 6.80657 7.04589 7.44394 7.71075 8.03553 8.42412 8.44271 9.01817 9.63608 10.11385 11.10848 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.012434 B = 0.002801 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.368410 B = 9995.038569 C =11209.297359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.132 4.132 3 C -0.077 4.077 4 C -0.209 4.209 5 C 0.137 3.863 6 O -0.315 6.315 7 C 0.080 3.920 8 C -0.142 4.142 9 C 0.530 3.470 10 O -0.555 6.555 11 N -0.583 5.583 12 C 0.130 3.870 13 C -0.169 4.169 14 C 0.162 3.838 15 N -0.598 5.598 16 C -0.348 4.348 17 H 0.066 0.934 18 C -0.012 4.012 19 N -0.916 5.916 20 Si 1.052 2.948 21 H -0.295 1.295 22 H -0.300 1.300 23 H -0.286 1.286 24 C 0.100 3.900 25 C 0.090 3.910 26 C -0.152 4.152 27 C -0.051 4.051 28 C -0.116 4.116 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.035 0.965 44 H 0.264 0.736 45 H 0.042 0.958 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.130 0.870 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.209 -2.159 -15.450 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.133 4.133 3 C -0.095 4.095 4 C -0.227 4.227 5 C 0.091 3.909 6 O -0.229 6.229 7 C 0.004 3.996 8 C -0.182 4.182 9 C 0.318 3.682 10 O -0.434 6.434 11 N -0.314 5.314 12 C 0.009 3.991 13 C -0.210 4.210 14 C 0.034 3.966 15 N -0.321 5.321 16 C -0.476 4.476 17 H 0.084 0.916 18 C -0.213 4.213 19 N -0.555 5.555 20 Si 0.884 3.116 21 H -0.223 1.223 22 H -0.228 1.228 23 H -0.212 1.212 24 C -0.026 4.026 25 C -0.036 4.036 26 C -0.170 4.170 27 C -0.051 4.051 28 C -0.173 4.173 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.148 0.852 50 H 0.091 0.909 51 H 0.090 0.910 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.215 -3.371 -15.122 18.558 hybrid contribution 0.043 1.885 -0.117 1.889 sum -10.171 -1.486 -15.239 18.382 Atomic orbital electron populations 1.20763 0.91356 1.02445 1.02062 1.19625 0.95974 0.92529 1.05136 1.20792 0.93279 0.97525 0.97873 1.21336 0.95397 0.97464 1.08552 1.18958 0.82314 0.94038 0.95558 1.85990 1.16280 1.32299 1.88330 1.22419 0.91325 0.83085 1.02742 1.21527 0.93673 0.96883 1.06095 1.20066 0.82272 0.90396 0.75438 1.90650 1.64385 1.37172 1.51167 1.47297 1.05084 1.07235 1.71833 1.20592 0.96347 0.84324 0.97851 1.21826 1.02114 0.99786 0.97286 1.20325 0.91481 0.87822 0.96943 1.43915 1.60219 1.17661 1.10292 1.20212 1.42813 0.94677 0.89936 0.91600 1.26127 0.98710 1.00545 0.95952 1.70838 1.23400 1.31082 1.30167 0.84043 0.76465 0.76422 0.74672 1.22280 1.22819 1.21229 1.22698 0.99460 0.90979 0.89511 1.21936 0.95928 0.86792 0.98948 1.20270 0.93038 0.96401 1.07328 1.19495 0.92514 0.95055 0.98056 1.20862 0.99955 0.93873 1.02587 0.91525 0.91957 0.91433 0.85923 0.85168 0.90942 0.91379 0.88132 0.87058 0.90231 0.91883 0.91163 0.92400 0.93038 0.94672 0.92592 0.94047 0.90958 0.90788 0.91055 0.85205 0.90881 0.91047 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.60 36.01 0.35 -0.53 16 2 C -0.13 -1.47 5.88 -104.60 -0.62 -2.09 16 3 C -0.08 -0.91 9.69 -39.61 -0.38 -1.30 16 4 C -0.21 -2.85 9.04 -39.43 -0.36 -3.21 16 5 C 0.14 2.02 6.69 -39.22 -0.26 1.75 16 6 O -0.32 -4.96 10.14 -19.44 -0.20 -5.16 16 7 C 0.08 1.23 4.03 37.16 0.15 1.38 16 8 C -0.14 -2.20 4.62 -27.88 -0.13 -2.33 16 9 C 0.53 9.47 7.67 -10.99 -0.08 9.39 16 10 O -0.55 -11.32 15.42 5.55 0.09 -11.24 16 11 N -0.58 -9.77 2.46 -176.47 -0.43 -10.20 16 12 C 0.13 2.04 5.70 -5.92 -0.03 2.00 16 13 C -0.17 -2.96 5.64 -29.14 -0.16 -3.12 16 14 C 0.16 3.09 5.63 -5.24 -0.03 3.06 16 15 N -0.60 -13.53 2.33 -171.82 -0.40 -13.94 16 16 C -0.35 -9.52 9.55 -15.06 -0.14 -9.66 16 17 H 0.07 1.98 8.06 -52.49 -0.42 1.55 16 18 C -0.01 -0.34 5.14 -17.43 -0.09 -0.43 16 19 N -0.92 -28.25 13.70 55.49 0.76 -27.49 16 20 Si 1.05 25.39 24.43 -169.99 -4.15 21.23 16 21 H -0.29 -6.61 6.75 56.52 0.38 -6.23 16 22 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 23 H -0.29 -6.46 6.41 56.52 0.36 -6.10 16 24 C 0.10 1.97 4.54 -1.59 -0.01 1.96 16 25 C 0.09 1.37 5.05 -4.43 -0.02 1.35 16 26 C -0.15 -2.00 9.64 -39.44 -0.38 -2.38 16 27 C -0.05 -0.58 5.88 -104.65 -0.62 -1.20 16 28 C -0.12 -0.96 9.60 36.01 0.35 -0.61 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.07 0.46 5.94 -51.93 -0.31 0.15 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.73 6.30 -52.49 -0.33 1.40 16 34 H 0.07 1.22 7.61 -51.93 -0.40 0.82 16 35 H 0.07 0.98 7.63 -51.93 -0.40 0.58 16 36 H 0.10 1.26 7.37 -51.93 -0.38 0.88 16 37 H 0.11 1.92 7.34 -51.93 -0.38 1.54 16 38 H 0.08 1.29 7.12 -51.93 -0.37 0.92 16 39 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 40 H 0.07 1.52 7.91 -51.93 -0.41 1.11 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 1.02 8.02 -51.93 -0.42 0.60 16 43 H 0.03 0.58 7.59 -51.93 -0.39 0.19 16 44 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 45 H 0.04 0.80 5.81 -51.93 -0.30 0.50 16 46 H 0.07 1.58 4.74 -51.93 -0.25 1.34 16 47 H 0.07 0.93 6.38 -51.93 -0.33 0.60 16 48 H 0.07 0.93 7.72 -51.93 -0.40 0.53 16 49 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.07 0.48 5.94 -51.93 -0.31 0.17 16 52 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 LS Contribution 397.31 15.07 5.99 5.99 Total: -1.00 -33.19 397.31 -9.21 -42.40 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -8.38 Total: 4.35 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.48 Total: -5.95 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.07 Total: -51.62 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.11 Total: -16.40 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -4.15 Total: 21.23 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.19 -9.21 -42.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196072607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.455 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds