Wall clock time and date at job start Wed Apr 1 2020 03:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35894 * 116.99974 * 2 1 4 4 C 1.38752 * 120.05566 * 359.97387 * 3 2 1 5 5 C 1.38122 * 119.94111 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.06013 * 359.72357 * 5 4 3 7 7 C 1.50701 * 119.95022 * 180.29948 * 6 5 4 8 8 C 1.50703 * 109.46749 * 265.25553 * 7 6 5 9 9 O 1.21274 * 120.00175 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99600 * 180.02562 * 8 7 6 11 11 C 1.47487 * 127.03442 * 0.02562 * 10 8 7 12 12 C 1.54009 * 107.08390 * 154.52137 * 11 10 8 13 13 H 1.08997 * 110.32565 * 242.41565 * 12 11 10 14 14 C 1.52995 * 110.32876 * 120.29714 * 12 11 10 15 15 C 1.54622 * 105.04377 * 1.30258 * 12 11 10 16 16 H 1.08993 * 110.73991 * 263.51736 * 15 12 11 17 17 C 1.53001 * 110.73720 * 140.36604 * 15 12 11 18 18 N 1.46499 * 109.47064 * 174.99835 * 17 15 12 19 19 C 1.36938 * 120.00030 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00160 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99617 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99652 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 120.00495 * 359.97438 * 21 19 18 24 24 H 1.48508 * 109.46848 * 90.00173 * 23 21 19 25 25 H 1.48497 * 109.47458 * 210.00219 * 23 21 19 26 26 H 1.48500 * 109.47305 * 330.00405 * 23 21 19 27 27 C 1.48116 * 127.03351 * 179.70852 * 10 8 7 28 28 C 1.38244 * 120.10795 * 0.55243 * 6 5 4 29 29 C 1.50706 * 119.97491 * 179.72367 * 28 6 5 30 30 C 1.38166 * 120.05792 * 359.45021 * 28 6 5 31 31 H 1.09005 * 109.46811 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47030 * 300.00209 * 1 2 3 33 33 H 1.08996 * 109.46993 * 60.00510 * 1 2 3 34 34 H 1.07997 * 120.02917 * 0.02562 * 4 3 2 35 35 H 1.08008 * 119.96958 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47006 * 25.25032 * 7 6 5 37 37 H 1.09001 * 109.47089 * 145.25621 * 7 6 5 38 38 H 1.08997 * 109.91477 * 273.87906 * 11 10 8 39 39 H 1.08993 * 109.91118 * 35.15942 * 11 10 8 40 40 H 1.09006 * 109.47155 * 61.45689 * 14 12 11 41 41 H 1.08998 * 109.47184 * 181.45285 * 14 12 11 42 42 H 1.08992 * 109.47253 * 301.45623 * 14 12 11 43 43 H 1.08998 * 109.47440 * 295.00564 * 17 15 12 44 44 H 1.09010 * 109.46829 * 55.00427 * 17 15 12 45 45 H 0.97004 * 119.99589 * 0.02562 * 18 17 15 46 46 H 0.96997 * 120.00313 * 179.97438 * 22 21 19 47 47 H 1.09004 * 110.66078 * 337.76821 * 27 10 8 48 48 H 1.09000 * 110.66447 * 100.88050 * 27 10 8 49 49 H 1.08999 * 109.47015 * 269.72794 * 29 28 6 50 50 H 1.09000 * 109.46646 * 29.71946 * 29 28 6 51 51 H 1.09000 * 109.47248 * 149.72664 * 29 28 6 52 52 H 1.07999 * 120.03143 * 180.25479 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9210 3.6046 -0.0011 6 6 3.3020 3.6757 0.0047 7 6 3.9862 5.0184 0.0109 8 6 4.3247 5.4162 -1.4027 9 8 4.0389 4.6816 -2.3243 10 7 4.9459 6.5879 -1.6425 11 6 5.3638 7.5921 -0.6464 12 6 6.5372 8.3778 -1.2608 13 1 7.4392 8.2390 -0.6647 14 6 6.1887 9.8644 -1.3575 15 6 6.7282 7.7757 -2.6720 16 1 7.5142 7.0206 -2.6664 17 6 7.0411 8.8729 -3.6914 18 7 7.3338 8.2632 -4.9909 19 6 7.6445 9.0547 -6.0642 20 1 7.6742 10.1285 -5.9527 21 6 7.9214 8.4769 -7.2956 22 7 8.2206 9.2377 -8.3272 23 14 7.8709 6.6196 -7.4884 24 1 6.5009 6.1996 -7.8784 25 1 8.8340 6.2046 -8.5398 26 1 8.2374 5.9780 -6.2003 27 6 5.3545 7.1277 -2.9599 28 6 4.0560 2.5171 -0.0005 29 6 5.5609 2.5980 -0.0005 30 6 3.4312 1.2847 0.0000 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 0.2129 2.3203 -0.0006 35 1 1.3340 4.5113 -0.0019 36 1 3.3213 5.7630 0.4485 37 1 4.9012 4.9572 0.6002 38 1 4.5365 8.2683 -0.4313 39 1 5.6879 7.0953 0.2680 40 1 6.0076 10.2610 -0.3585 41 1 7.0175 10.4027 -1.8173 42 1 5.2928 9.9887 -1.9657 43 1 6.1814 9.5362 -3.7866 44 1 7.9060 9.4451 -3.3554 45 1 7.3076 7.2987 -5.0909 46 1 8.4144 8.8340 -9.1876 47 1 5.4544 6.3248 -3.6904 48 1 4.6429 7.8774 -3.3059 49 1 5.9237 2.6172 -1.0281 50 1 5.8758 3.5066 0.5129 51 1 5.9715 1.7291 0.5137 52 1 4.0207 0.3798 0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733545162.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:11 Heat of formation + Delta-G solvation = -34.731336 kcal Electronic energy + Delta-G solvation = -30436.372110 eV Core-core repulsion = 26401.445177 eV Total energy + Delta-G solvation = -4034.926933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.71235 -40.03817 -38.56644 -37.51898 -34.83919 -33.07556 -32.83178 -32.33265 -31.36517 -29.65515 -28.78668 -27.12533 -26.83482 -26.28682 -25.22009 -23.20049 -22.42091 -21.70068 -21.03574 -19.30109 -19.18968 -17.99718 -17.53102 -17.12173 -16.83582 -16.09332 -16.02569 -15.71017 -15.18884 -15.06053 -14.63766 -14.50028 -14.15687 -14.03130 -13.86216 -13.61553 -13.41148 -13.16405 -12.94223 -12.64295 -12.58339 -12.48065 -12.43664 -12.31395 -12.18421 -12.03932 -11.90749 -11.77495 -11.48369 -11.26040 -11.15359 -11.01828 -10.90051 -10.55608 -10.50761 -10.31658 -10.05387 -9.82282 -9.57528 -8.96968 -8.88246 -8.67766 -8.28777 -7.22142 -5.75693 -3.11299 1.13158 1.18952 2.63228 2.92543 2.99204 3.41255 3.45242 3.49365 3.54575 4.40164 4.45917 4.49076 4.53004 4.61670 4.63547 4.71521 4.76824 4.81168 4.86314 4.89695 4.96217 5.07080 5.11968 5.16959 5.22477 5.34932 5.38356 5.40430 5.46545 5.48173 5.52820 5.56000 5.64960 5.70265 5.73522 5.79552 5.87783 5.94063 6.04473 6.07374 6.08679 6.14884 6.17886 6.26262 6.36969 6.42801 6.54505 6.62086 6.73414 7.14220 7.55464 7.99700 8.17830 8.43243 9.22121 9.94912 10.14034 11.42569 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.012683 B = 0.002418 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.207749 B =11576.905890 C =12977.909179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.129 3.871 4 C -0.213 4.213 5 C -0.062 4.062 6 C -0.103 4.103 7 C -0.094 4.094 8 C 0.530 3.470 9 O -0.530 6.530 10 N -0.624 5.624 11 C 0.104 3.896 12 C -0.097 4.097 13 H 0.083 0.917 14 C -0.147 4.147 15 C -0.108 4.108 16 H 0.081 0.919 17 C 0.169 3.831 18 N -0.757 5.757 19 C -0.244 4.244 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.934 5.934 23 Si 0.883 3.117 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.113 3.887 28 C -0.027 4.027 29 C -0.120 4.120 30 C -0.152 4.152 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.034 0.966 44 H 0.032 0.968 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.069 0.931 51 H 0.069 0.931 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.879 -11.583 26.303 31.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.084 3.916 4 C -0.232 4.232 5 C -0.080 4.080 6 C -0.104 4.104 7 C -0.134 4.134 8 C 0.318 3.682 9 O -0.405 6.405 10 N -0.359 5.359 11 C -0.019 4.019 12 C -0.117 4.117 13 H 0.101 0.899 14 C -0.204 4.204 15 C -0.128 4.128 16 H 0.099 0.901 17 C 0.042 3.958 18 N -0.403 5.403 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.582 5.582 23 Si 0.713 3.287 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.009 4.009 28 C -0.027 4.027 29 C -0.176 4.176 30 C -0.171 4.171 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.973 -12.068 25.685 31.203 hybrid contribution -0.311 -1.100 -0.347 1.194 sum -13.283 -13.168 25.338 31.494 Atomic orbital electron populations 1.23045 0.78451 1.03846 1.01394 1.86057 1.21353 1.27081 1.88795 1.18975 0.92270 0.84056 0.96304 1.21120 0.99850 0.92246 1.09945 1.20728 0.93613 0.97106 0.96570 1.19020 0.93250 0.93265 1.04871 1.20612 1.02325 0.95573 0.94894 1.20162 0.77352 0.79515 0.91142 1.90749 1.52867 1.50808 1.46108 1.48909 1.58729 1.18741 1.09528 1.22254 0.97230 0.90570 0.91862 1.22019 0.97543 0.95700 0.96414 0.89855 1.21912 1.02760 0.94328 1.01381 1.22508 0.96864 0.98866 0.94554 0.90101 1.20698 0.98037 0.92819 0.84295 1.42770 1.85719 1.04982 1.06835 1.19027 1.39388 0.91890 0.87079 0.89197 1.24666 1.01552 0.97136 0.95724 1.69698 1.53821 1.33801 1.00852 0.86580 0.77761 0.87125 0.77258 1.20956 1.21715 1.20353 1.22482 0.95179 0.98334 0.84878 1.19461 0.95943 0.91598 0.95718 1.20896 0.90861 1.02695 1.03160 1.20201 0.91288 0.97965 1.07643 0.88307 0.92701 0.92585 0.85564 0.85897 0.88324 0.87936 0.91241 0.91070 0.92885 0.91210 0.92067 0.94865 0.95012 0.80691 0.93066 0.89913 0.90582 0.90338 0.91274 0.91240 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.36 10.50 -19.41 -0.20 -3.56 16 3 C 0.13 1.47 6.69 -39.22 -0.26 1.21 16 4 C -0.21 -2.20 9.04 -39.43 -0.36 -2.56 16 5 C -0.06 -0.66 9.67 -39.61 -0.38 -1.04 16 6 C -0.10 -1.16 4.37 -104.60 -0.46 -1.61 16 7 C -0.09 -0.90 4.40 -29.03 -0.13 -1.03 16 8 C 0.53 7.24 7.88 -10.98 -0.09 7.15 16 9 O -0.53 -9.66 16.24 5.56 0.09 -9.57 16 10 N -0.62 -7.94 3.29 -169.98 -0.56 -8.50 16 11 C 0.10 0.95 6.42 -2.98 -0.02 0.93 16 12 C -0.10 -1.00 3.52 -89.24 -0.31 -1.32 16 13 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 14 C -0.15 -1.44 7.79 37.16 0.29 -1.15 16 15 C -0.11 -1.56 2.98 -88.93 -0.27 -1.82 16 16 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 17 C 0.17 3.06 4.45 -4.04 -0.02 3.04 16 18 N -0.76 -17.84 5.33 -59.91 -0.32 -18.16 16 19 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 20 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -29.56 13.97 55.49 0.78 -28.79 16 23 Si 0.88 22.73 27.73 -169.99 -4.71 18.02 16 24 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 27 C 0.11 1.73 6.44 -2.32 -0.01 1.71 16 28 C -0.03 -0.31 5.88 -104.64 -0.62 -0.92 16 29 C -0.12 -1.14 9.61 36.01 0.35 -0.79 16 30 C -0.15 -1.75 9.64 -39.43 -0.38 -2.13 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 33 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 34 H 0.13 1.01 6.30 -52.49 -0.33 0.68 16 35 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 36 H 0.10 0.72 8.05 -51.93 -0.42 0.30 16 37 H 0.10 0.77 5.92 -51.93 -0.31 0.46 16 38 H 0.07 0.55 7.68 -51.93 -0.40 0.16 16 39 H 0.07 0.49 7.54 -51.93 -0.39 0.09 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.76 6.76 -51.93 -0.35 0.41 16 42 H 0.06 0.65 7.52 -51.93 -0.39 0.26 16 43 H 0.03 0.60 6.82 -51.93 -0.35 0.25 16 44 H 0.03 0.58 7.38 -51.92 -0.38 0.20 16 45 H 0.36 8.48 5.53 -40.82 -0.23 8.26 16 46 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 47 H 0.08 1.48 7.85 -51.93 -0.41 1.08 16 48 H 0.08 1.17 7.95 -51.93 -0.41 0.76 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.07 0.56 6.01 -51.93 -0.31 0.24 16 51 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 52 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 410.29 15.07 6.18 6.18 Total: -1.00 -35.92 410.29 -9.13 -45.05 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -8.45 Total: 5.51 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.93 Total: -6.18 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.10 Total: -55.44 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.11 Total: -13.14 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.71 Total: 18.02 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.92 -9.13 -45.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733545162.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.319 kcal (2) G-P(sol) polarization free energy of solvation -35.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds