Wall clock time and date at job start Wed Apr 1 2020 03:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35894 * 116.99974 * 2 1 4 4 C 1.38752 * 120.05566 * 359.97387 * 3 2 1 5 5 C 1.38122 * 119.94111 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.06013 * 359.72357 * 5 4 3 7 7 C 1.50701 * 119.95022 * 180.29948 * 6 5 4 8 8 C 1.50703 * 109.46749 * 265.25553 * 7 6 5 9 9 O 1.21274 * 120.00175 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99600 * 180.02562 * 8 7 6 11 11 C 1.47487 * 127.03442 * 0.02562 * 10 8 7 12 12 C 1.54009 * 107.08390 * 154.52137 * 11 10 8 13 13 H 1.08997 * 110.32565 * 242.41565 * 12 11 10 14 14 C 1.52995 * 110.32876 * 120.29714 * 12 11 10 15 15 C 1.54622 * 105.04377 * 1.30258 * 12 11 10 16 16 H 1.08993 * 110.73991 * 263.51736 * 15 12 11 17 17 C 1.53001 * 110.73720 * 140.36604 * 15 12 11 18 18 N 1.46499 * 109.47064 * 174.99835 * 17 15 12 19 19 C 1.36938 * 120.00030 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00160 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99617 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99652 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 120.00495 * 359.97438 * 21 19 18 24 24 H 1.48508 * 109.46848 * 90.00173 * 23 21 19 25 25 H 1.48497 * 109.47458 * 210.00219 * 23 21 19 26 26 H 1.48500 * 109.47305 * 330.00405 * 23 21 19 27 27 C 1.48116 * 127.03351 * 179.70852 * 10 8 7 28 28 C 1.38244 * 120.10795 * 0.55243 * 6 5 4 29 29 C 1.50706 * 119.97491 * 179.72367 * 28 6 5 30 30 C 1.38166 * 120.05792 * 359.45021 * 28 6 5 31 31 H 1.09005 * 109.46811 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47030 * 300.00209 * 1 2 3 33 33 H 1.08996 * 109.46993 * 60.00510 * 1 2 3 34 34 H 1.07997 * 120.02917 * 0.02562 * 4 3 2 35 35 H 1.08008 * 119.96958 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47006 * 25.25032 * 7 6 5 37 37 H 1.09001 * 109.47089 * 145.25621 * 7 6 5 38 38 H 1.08997 * 109.91477 * 273.87906 * 11 10 8 39 39 H 1.08993 * 109.91118 * 35.15942 * 11 10 8 40 40 H 1.09006 * 109.47155 * 61.45689 * 14 12 11 41 41 H 1.08998 * 109.47184 * 181.45285 * 14 12 11 42 42 H 1.08992 * 109.47253 * 301.45623 * 14 12 11 43 43 H 1.08998 * 109.47440 * 295.00564 * 17 15 12 44 44 H 1.09010 * 109.46829 * 55.00427 * 17 15 12 45 45 H 0.97004 * 119.99589 * 0.02562 * 18 17 15 46 46 H 0.96997 * 120.00313 * 179.97438 * 22 21 19 47 47 H 1.09004 * 110.66078 * 337.76821 * 27 10 8 48 48 H 1.09000 * 110.66447 * 100.88050 * 27 10 8 49 49 H 1.08999 * 109.47015 * 269.72794 * 29 28 6 50 50 H 1.09000 * 109.46646 * 29.71946 * 29 28 6 51 51 H 1.09000 * 109.47248 * 149.72664 * 29 28 6 52 52 H 1.07999 * 120.03143 * 180.25479 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9210 3.6046 -0.0011 6 6 3.3020 3.6757 0.0047 7 6 3.9862 5.0184 0.0109 8 6 4.3247 5.4162 -1.4027 9 8 4.0389 4.6816 -2.3243 10 7 4.9459 6.5879 -1.6425 11 6 5.3638 7.5921 -0.6464 12 6 6.5372 8.3778 -1.2608 13 1 7.4392 8.2390 -0.6647 14 6 6.1887 9.8644 -1.3575 15 6 6.7282 7.7757 -2.6720 16 1 7.5142 7.0206 -2.6664 17 6 7.0411 8.8729 -3.6914 18 7 7.3338 8.2632 -4.9909 19 6 7.6445 9.0547 -6.0642 20 1 7.6742 10.1285 -5.9527 21 6 7.9214 8.4769 -7.2956 22 7 8.2206 9.2377 -8.3272 23 14 7.8709 6.6196 -7.4884 24 1 6.5009 6.1996 -7.8784 25 1 8.8340 6.2046 -8.5398 26 1 8.2374 5.9780 -6.2003 27 6 5.3545 7.1277 -2.9599 28 6 4.0560 2.5171 -0.0005 29 6 5.5609 2.5980 -0.0005 30 6 3.4312 1.2847 0.0000 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 0.2129 2.3203 -0.0006 35 1 1.3340 4.5113 -0.0019 36 1 3.3213 5.7630 0.4485 37 1 4.9012 4.9572 0.6002 38 1 4.5365 8.2683 -0.4313 39 1 5.6879 7.0953 0.2680 40 1 6.0076 10.2610 -0.3585 41 1 7.0175 10.4027 -1.8173 42 1 5.2928 9.9887 -1.9657 43 1 6.1814 9.5362 -3.7866 44 1 7.9060 9.4451 -3.3554 45 1 7.3076 7.2987 -5.0909 46 1 8.4144 8.8340 -9.1876 47 1 5.4544 6.3248 -3.6904 48 1 4.6429 7.8774 -3.3059 49 1 5.9237 2.6172 -1.0281 50 1 5.8758 3.5066 0.5129 51 1 5.9715 1.7291 0.5137 52 1 4.0207 0.3798 0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733545162.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:10 Heat of formation + Delta-G solvation = -57.847005 kcal Electronic energy + Delta-G solvation = -30437.374481 eV Core-core repulsion = 26401.445177 eV Total energy + Delta-G solvation = -4035.929303 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.56917 -40.93368 -39.49711 -38.44247 -36.56872 -34.36376 -33.65120 -33.22161 -33.04709 -30.89651 -29.62045 -28.07611 -27.49364 -27.11286 -26.58524 -24.60551 -23.36827 -23.10807 -21.80989 -20.58741 -20.22912 -19.26079 -18.71137 -18.20913 -17.60600 -17.16006 -16.73567 -16.62776 -16.54667 -16.12719 -15.94347 -15.68911 -15.21715 -14.90565 -14.86867 -14.78788 -14.41031 -14.31319 -14.18354 -14.12828 -13.62246 -13.44086 -13.24820 -13.12748 -13.11243 -13.00076 -12.88390 -12.83713 -12.75126 -12.64035 -12.21766 -12.17631 -11.85511 -11.85304 -11.72501 -11.60370 -11.55402 -11.35573 -10.96085 -10.89737 -9.75477 -9.70463 -9.29484 -9.06359 -8.05237 -5.37065 0.34977 0.39275 1.33757 1.36534 1.42078 1.64534 1.97506 2.34904 2.44244 2.74825 3.26681 3.37556 3.61507 3.68399 3.78463 3.79411 3.87804 3.92829 4.09755 4.16187 4.19167 4.23894 4.32025 4.35696 4.37761 4.40468 4.51438 4.56482 4.59914 4.64766 4.70699 4.73264 4.77006 4.80093 4.81293 4.84796 4.96364 5.00021 5.00929 5.13448 5.19032 5.24860 5.28421 5.32517 5.38614 5.40692 5.58032 5.65687 5.75281 5.81637 6.19566 6.42883 6.60590 7.06018 7.18055 7.83775 7.99915 9.16262 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.012683 B = 0.002418 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.207749 B =11576.905890 C =12977.909179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.115 3.885 4 C -0.219 4.219 5 C -0.072 4.072 6 C -0.119 4.119 7 C -0.083 4.083 8 C 0.525 3.475 9 O -0.586 6.586 10 N -0.622 5.622 11 C 0.103 3.897 12 C -0.087 4.087 13 H 0.106 0.894 14 C -0.146 4.146 15 C -0.101 4.101 16 H 0.074 0.926 17 C 0.167 3.833 18 N -0.763 5.763 19 C -0.227 4.227 20 H 0.063 0.937 21 C -0.061 4.061 22 N -0.981 5.981 23 Si 0.946 3.054 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.258 1.258 27 C 0.113 3.887 28 C -0.041 4.041 29 C -0.117 4.117 30 C -0.174 4.174 31 H 0.119 0.881 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.361 0.639 46 H 0.257 0.743 47 H 0.046 0.954 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.087 0.913 51 H 0.083 0.917 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.649 -11.913 30.038 35.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.070 3.930 4 C -0.238 4.238 5 C -0.090 4.090 6 C -0.119 4.119 7 C -0.122 4.122 8 C 0.316 3.684 9 O -0.466 6.466 10 N -0.355 5.355 11 C -0.019 4.019 12 C -0.107 4.107 13 H 0.124 0.876 14 C -0.203 4.203 15 C -0.120 4.120 16 H 0.092 0.908 17 C 0.041 3.959 18 N -0.408 5.408 19 C -0.358 4.358 20 H 0.081 0.919 21 C -0.253 4.253 22 N -0.632 5.632 23 Si 0.774 3.226 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.183 1.183 27 C -0.010 4.010 28 C -0.041 4.041 29 C -0.173 4.173 30 C -0.192 4.192 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.194 0.806 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.106 0.894 51 H 0.102 0.898 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.748 -12.378 29.509 34.828 hybrid contribution -0.143 -0.922 -1.472 1.743 sum -13.891 -13.300 28.036 33.998 Atomic orbital electron populations 1.23324 0.76529 1.05512 1.02155 1.86029 1.23446 1.26981 1.88762 1.19197 0.92562 0.84768 0.96490 1.21400 1.00971 0.91955 1.09458 1.21072 0.93883 0.97938 0.96072 1.19303 0.93712 0.93986 1.04942 1.20656 1.04087 0.95349 0.92131 1.20952 0.76289 0.78848 0.92304 1.90728 1.55197 1.52546 1.48163 1.48970 1.58191 1.19197 1.09155 1.22540 0.97329 0.90136 0.91878 1.22044 0.99298 0.95824 0.93523 0.87590 1.21908 1.01585 0.93924 1.02907 1.22348 0.95943 0.97541 0.96209 0.90804 1.20888 0.98008 0.94101 0.82893 1.42872 1.85462 1.04759 1.07723 1.19056 1.37161 0.91252 0.88373 0.91858 1.25400 1.02580 1.01635 0.95662 1.69855 1.56169 1.35755 1.01408 0.85543 0.77361 0.81841 0.77830 1.21171 1.21910 1.18252 1.22261 0.95746 0.97074 0.85947 1.19742 0.96905 0.91762 0.95689 1.20902 0.89911 1.04371 1.02162 1.20435 0.91860 0.98465 1.08454 0.86320 0.91329 0.92347 0.83576 0.84004 0.85161 0.85236 0.89178 0.87319 0.89779 0.92681 0.93244 0.94712 0.94570 0.80637 0.93367 0.93486 0.91270 0.92510 0.89422 0.89833 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.98 10.50 -92.36 -0.97 -7.95 16 3 C 0.11 2.58 6.69 22.51 0.15 2.73 16 4 C -0.22 -4.28 9.04 22.37 0.20 -4.08 16 5 C -0.07 -1.39 9.67 22.25 0.22 -1.18 16 6 C -0.12 -2.43 4.37 -19.85 -0.09 -2.52 16 7 C -0.08 -1.30 4.40 29.10 0.13 -1.17 16 8 C 0.53 13.34 7.88 87.66 0.69 14.03 16 9 O -0.59 -21.47 16.24 -3.01 -0.05 -21.52 16 10 N -0.62 -14.28 3.29 -810.09 -2.67 -16.95 16 11 C 0.10 1.38 6.42 86.53 0.56 1.94 16 12 C -0.09 -1.47 3.52 -9.90 -0.03 -1.51 16 13 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 14 C -0.15 -2.39 7.79 71.98 0.56 -1.83 16 15 C -0.10 -2.74 2.98 -9.70 -0.03 -2.77 16 16 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 17 C 0.17 5.95 4.45 86.38 0.38 6.33 16 18 N -0.76 -35.98 5.33 -343.44 -1.83 -37.81 16 19 C -0.23 -13.09 10.47 84.03 0.88 -12.21 16 20 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 21 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 22 N -0.98 -63.83 13.97 21.65 0.30 -63.53 16 23 Si 0.95 47.82 27.73 68.60 1.90 49.72 16 24 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 26 H -0.26 -12.01 6.52 99.48 0.65 -11.36 16 27 C 0.11 3.38 6.44 86.61 0.56 3.94 16 28 C -0.04 -0.89 5.88 -19.88 -0.12 -1.01 16 29 C -0.12 -2.08 9.61 71.24 0.68 -1.39 16 30 C -0.17 -3.98 9.64 22.37 0.22 -3.77 16 31 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 33 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 34 H 0.15 2.08 6.30 -2.91 -0.02 2.06 16 35 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.13 1.22 8.05 -2.39 -0.02 1.20 16 37 H 0.13 1.30 5.92 -2.39 -0.01 1.29 16 38 H 0.09 0.94 7.68 -2.39 -0.02 0.92 16 39 H 0.11 0.75 7.54 -2.39 -0.02 0.74 16 40 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.05 1.07 6.76 -2.39 -0.02 1.06 16 42 H 0.05 0.93 7.52 -2.39 -0.02 0.91 16 43 H 0.03 1.25 6.82 -2.39 -0.02 1.23 16 44 H 0.04 1.29 7.38 -2.38 -0.02 1.27 16 45 H 0.36 16.90 5.53 -92.71 -0.51 16.38 16 46 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 47 H 0.05 1.73 7.85 -2.38 -0.02 1.71 16 48 H 0.07 2.13 7.95 -2.39 -0.02 2.11 16 49 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.09 1.15 6.01 -2.39 -0.01 1.14 16 51 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 52 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -82.33 410.29 3.57 -78.76 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.35 Total: 25.61 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 6.54 Total: -6.34 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -4.19 Total: -118.29 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -1.02 Total: -29.46 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 1.90 Total: 49.72 kcal Total: -82.33 3.57 -78.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733545162.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.912 kcal (2) G-P(sol) polarization free energy of solvation -82.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds