Wall clock time and date at job start Wed Apr 1 2020 04:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38269 * 119.94436 * 2 1 4 4 C 1.38148 * 120.05481 * 180.02562 * 3 2 1 5 5 C 1.38728 * 119.94473 * 0.02562 * 4 3 2 6 6 O 1.35902 * 120.05708 * 180.02562 * 5 4 3 7 7 C 1.42899 * 117.00256 * 185.20812 * 6 5 4 8 8 H 1.08994 * 109.47344 * 35.13961 * 7 6 5 9 9 C 1.53006 * 109.46740 * 275.14042 * 7 6 5 10 10 C 1.50698 * 109.47592 * 155.14234 * 7 6 5 11 11 O 1.21285 * 119.99825 * 4.99696 * 10 7 6 12 12 N 1.34766 * 120.00482 * 184.99761 * 10 7 6 13 13 C 1.46502 * 120.00563 * 174.97484 * 12 10 7 14 14 C 1.53003 * 110.01495 * 65.32221 * 13 12 10 15 15 N 1.46500 * 109.46730 * 58.27750 * 14 13 12 16 16 C 1.36942 * 119.99500 * 174.93441 * 15 14 13 17 17 H 1.08002 * 120.00266 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99657 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00148 * 359.72117 * 18 16 15 20 20 Si 1.86796 * 119.99784 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47278 * 59.99579 * 20 18 16 22 22 H 1.48495 * 109.47112 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47057 * 300.00089 * 20 18 16 24 24 C 1.54261 * 110.07399 * 186.74403 * 13 12 10 25 25 C 1.54893 * 104.19513 * 95.69554 * 24 13 12 26 26 C 1.54894 * 102.74909 * 37.94328 * 25 24 13 27 27 C 1.53881 * 110.02835 * 303.93575 * 13 12 10 28 28 C 1.38737 * 119.88950 * 0.27000 * 5 4 3 29 29 C 1.38146 * 119.93906 * 359.43289 * 28 5 4 30 30 H 1.09001 * 109.47555 * 89.99657 * 1 2 3 31 31 H 1.09000 * 109.47168 * 209.99673 * 1 2 3 32 32 H 1.09001 * 109.47032 * 329.99986 * 1 2 3 33 33 H 1.07992 * 119.97189 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.02945 * 180.02562 * 4 3 2 35 35 H 1.08994 * 109.47133 * 179.97438 * 9 7 6 36 36 H 1.09004 * 109.46973 * 299.99956 * 9 7 6 37 37 H 1.08999 * 109.47268 * 59.99519 * 9 7 6 38 38 H 0.97005 * 119.99937 * 354.97680 * 12 10 7 39 39 H 1.08995 * 109.46950 * 298.27139 * 14 13 12 40 40 H 1.09005 * 109.46748 * 178.27342 * 14 13 12 41 41 H 0.96991 * 120.00209 * 354.92822 * 15 14 13 42 42 H 0.96992 * 120.00115 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.48312 * 214.37149 * 24 13 12 44 44 H 1.08997 * 110.48734 * 337.01634 * 24 13 12 45 45 H 1.08996 * 110.75883 * 279.62287 * 25 24 13 46 46 H 1.09005 * 110.75530 * 156.25284 * 25 24 13 47 47 H 1.08996 * 110.48043 * 203.37932 * 26 25 24 48 48 H 1.08993 * 110.48762 * 80.73520 * 26 25 24 49 49 H 1.08995 * 110.03131 * 359.94526 * 27 13 12 50 50 H 1.08997 * 110.03301 * 121.38276 * 27 13 12 51 51 H 1.07997 * 120.02677 * 179.72011 * 28 5 4 52 52 H 1.08000 * 119.96430 * 180.27063 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2008 -0.0005 5 6 4.2734 0.0000 -0.0016 6 8 5.6324 0.0000 -0.0016 7 6 6.2811 -1.2679 -0.1183 8 1 5.6974 -1.9160 -0.7719 9 6 6.3975 -1.9105 1.2654 10 6 7.6579 -1.0761 -0.7004 11 8 8.0803 0.0426 -0.9027 12 7 8.4197 -2.1477 -0.9963 13 6 9.7116 -1.9666 -1.6631 14 6 10.6740 -1.2117 -0.7439 15 7 10.8396 -1.9563 0.5069 16 6 11.7387 -1.5259 1.4459 17 1 12.3260 -0.6379 1.2642 18 6 11.8953 -2.2311 2.6312 19 7 11.1757 -3.3102 2.8550 20 14 13.1222 -1.6445 3.9118 21 1 12.7586 -0.2745 4.3547 22 1 13.0983 -2.5638 5.0778 23 1 14.4846 -1.6285 3.3212 24 6 10.3086 -3.3375 -2.0421 25 6 9.8826 -3.5426 -3.5171 26 6 10.0098 -2.1176 -4.1110 27 6 9.5215 -1.1909 -2.9785 28 6 3.5785 -1.2008 -0.0078 29 6 2.1971 -1.1980 -0.0011 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6558 2.1326 -0.0004 34 1 4.1173 2.1369 -0.0001 35 1 6.8919 -2.8777 1.1764 36 1 6.9813 -1.2623 1.9190 37 1 5.4017 -2.0491 1.6865 38 1 8.1127 -3.0391 -0.7678 39 1 10.2694 -0.2230 -0.5275 40 1 11.6411 -1.1088 -1.2363 41 1 10.3125 -2.7539 0.6699 42 1 11.2848 -3.8027 3.6834 43 1 11.3952 -3.3167 -1.9582 44 1 9.8913 -4.1228 -1.4118 45 1 8.8530 -3.8953 -3.5764 46 1 10.5583 -4.2331 -4.0219 47 1 9.3745 -2.0128 -4.9903 48 1 11.0481 -1.8999 -4.3611 49 1 8.4681 -0.9502 -3.1211 50 1 10.1150 -0.2769 -2.9620 51 1 4.1172 -2.1368 -0.0132 52 1 1.6558 -2.1326 -0.0015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665964352.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:52 Heat of formation + Delta-G solvation = -44.967284 kcal Electronic energy + Delta-G solvation = -31271.596883 eV Core-core repulsion = 27236.226086 eV Total energy + Delta-G solvation = -4035.370797 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.70466 -39.83995 -38.16084 -37.02671 -34.28775 -33.45622 -32.46950 -31.58432 -31.07597 -30.54113 -28.63217 -27.91117 -26.62463 -24.63735 -24.26645 -23.06916 -22.20485 -21.55702 -20.70669 -20.20543 -18.95247 -18.29810 -17.28723 -17.05033 -15.97181 -15.70487 -15.51703 -15.46206 -15.03102 -14.54297 -14.39879 -14.35450 -14.08505 -13.82653 -13.74059 -13.63277 -13.18531 -13.07462 -12.95459 -12.68977 -12.50895 -12.35563 -12.11344 -11.87440 -11.69180 -11.64187 -11.53695 -11.15516 -10.97939 -10.92168 -10.88612 -10.82617 -10.78823 -10.66756 -10.45320 -10.41826 -10.05585 -9.66418 -9.33897 -9.13769 -8.78080 -8.59092 -8.12712 -6.83326 -5.72896 -2.98706 1.19559 1.28813 2.72924 2.91549 3.47215 3.51112 3.52856 3.60993 3.74588 4.56815 4.60564 4.64782 4.69261 4.71758 4.83075 4.85036 4.89506 4.97482 5.06951 5.08769 5.19336 5.34493 5.38441 5.54018 5.56507 5.58680 5.63130 5.64965 5.66142 5.69501 5.75508 5.79038 5.89771 5.90419 5.97122 6.02907 6.15274 6.20151 6.23525 6.27376 6.29471 6.39224 6.45104 6.50293 6.53666 6.59858 6.64909 6.92313 7.12999 7.34707 7.75045 7.82704 8.47008 8.55110 9.58568 10.16414 10.52742 11.50323 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.010043 B = 0.002992 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.414097 B = 9355.684675 C =11179.218314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.133 4.133 3 C -0.081 4.081 4 C -0.148 4.148 5 C 0.132 3.868 6 O -0.283 6.283 7 C 0.069 3.931 8 H 0.092 0.908 9 C -0.174 4.174 10 C 0.524 3.476 11 O -0.510 6.510 12 N -0.706 5.706 13 C 0.172 3.828 14 C 0.144 3.856 15 N -0.726 5.726 16 C -0.230 4.230 17 H 0.068 0.932 18 C -0.015 4.015 19 N -0.937 5.937 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.118 4.118 28 C -0.209 4.209 29 C -0.080 4.080 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.396 0.604 39 H 0.039 0.961 40 H 0.027 0.973 41 H 0.381 0.619 42 H 0.253 0.747 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.065 0.935 50 H 0.073 0.927 51 H 0.131 0.869 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.629 0.028 -11.620 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.133 4.133 3 C -0.099 4.099 4 C -0.166 4.166 5 C 0.086 3.914 6 O -0.195 6.195 7 C 0.009 3.991 8 H 0.110 0.890 9 C -0.232 4.232 10 C 0.308 3.692 11 O -0.384 6.384 12 N -0.359 5.359 13 C 0.086 3.914 14 C 0.016 3.984 15 N -0.370 5.370 16 C -0.361 4.361 17 H 0.086 0.914 18 C -0.211 4.211 19 N -0.586 5.586 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.154 4.154 25 C -0.163 4.163 26 C -0.162 4.162 27 C -0.157 4.157 28 C -0.228 4.228 29 C -0.098 4.098 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.231 0.769 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.215 0.785 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.092 0.908 51 H 0.148 0.852 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.048 1.127 -11.676 21.525 hybrid contribution 0.365 -0.661 1.116 1.347 sum -17.682 0.467 -10.560 20.601 Atomic orbital electron populations 1.20696 0.91226 1.02515 1.01982 1.19805 0.96113 0.93111 1.04288 1.20830 0.92904 0.97730 0.98407 1.20471 0.93706 0.96564 1.05891 1.19115 0.82522 0.94232 0.95499 1.86240 1.15704 1.30317 1.87216 1.22262 0.92822 0.84996 0.99045 0.89038 1.22310 1.03549 1.02164 0.95160 1.19775 0.85719 0.85445 0.78273 1.90713 1.72566 1.23748 1.51372 1.45916 1.19937 1.08633 1.61417 1.21277 0.82404 0.95913 0.91786 1.21173 0.94510 0.95341 0.87409 1.42185 1.48104 1.31107 1.15560 1.19194 1.13513 1.07331 0.96101 0.91449 1.24660 1.00325 0.97916 0.98178 1.69625 1.43635 1.19225 1.26164 0.86290 0.81086 0.77677 0.81310 1.21399 1.21796 1.21386 1.22581 1.02239 0.95275 0.95342 1.22538 1.00905 0.96789 0.96049 1.22386 1.01149 0.95056 0.97607 1.22414 1.01802 0.98578 0.92865 1.21321 0.95375 0.97281 1.08826 1.20801 0.93218 0.97625 0.98138 0.91586 0.91816 0.91780 0.85515 0.85027 0.89879 0.90021 0.91199 0.76939 0.94371 0.95543 0.78529 0.93699 0.89425 0.90957 0.91872 0.91611 0.92065 0.91522 0.91580 0.90832 0.85173 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.00 0.36 -0.37 16 2 C -0.13 -1.27 5.88 -104.61 -0.62 -1.89 16 3 C -0.08 -0.82 9.69 -39.60 -0.38 -1.20 16 4 C -0.15 -1.82 9.99 -39.43 -0.39 -2.21 16 5 C 0.13 1.79 6.60 -39.22 -0.26 1.53 16 6 O -0.28 -4.53 9.34 -39.29 -0.37 -4.89 16 7 C 0.07 0.97 2.64 -27.88 -0.07 0.89 16 8 H 0.09 1.01 6.29 -51.93 -0.33 0.68 16 9 C -0.17 -2.38 9.12 37.16 0.34 -2.04 16 10 C 0.52 8.97 6.22 -10.99 -0.07 8.90 16 11 O -0.51 -10.77 13.74 -14.31 -0.20 -10.97 16 12 N -0.71 -10.80 4.61 -46.57 -0.21 -11.01 16 13 C 0.17 2.80 0.56 -130.70 -0.07 2.73 16 14 C 0.14 3.07 4.66 -4.04 -0.02 3.05 16 15 N -0.73 -18.20 5.25 -59.90 -0.31 -18.51 16 16 C -0.23 -6.53 9.99 -15.06 -0.15 -6.68 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 19 N -0.94 -27.83 13.06 55.49 0.72 -27.10 16 20 Si 0.90 22.84 29.55 -169.99 -5.02 17.82 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 C -0.12 -1.67 5.59 -25.07 -0.14 -1.81 16 25 C -0.13 -1.42 6.91 -24.73 -0.17 -1.60 16 26 C -0.12 -1.47 6.83 -25.07 -0.17 -1.64 16 27 C -0.12 -1.74 5.22 -25.61 -0.13 -1.87 16 28 C -0.21 -2.36 8.25 -39.43 -0.33 -2.69 16 29 C -0.08 -0.79 9.69 -39.61 -0.38 -1.17 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.08 1.04 7.77 -51.93 -0.40 0.64 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.07 0.82 6.94 -51.93 -0.36 0.46 16 38 H 0.40 5.08 7.85 -40.82 -0.32 4.76 16 39 H 0.04 0.93 6.48 -51.93 -0.34 0.59 16 40 H 0.03 0.57 8.11 -51.93 -0.42 0.15 16 41 H 0.38 9.69 7.20 -40.82 -0.29 9.39 16 42 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.09 1.40 7.83 -51.93 -0.41 1.00 16 44 H 0.07 1.03 7.70 -51.93 -0.40 0.63 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.07 1.01 6.98 -51.93 -0.36 0.65 16 50 H 0.07 1.17 7.67 -51.93 -0.40 0.77 16 51 H 0.13 1.26 5.44 -52.49 -0.29 0.98 16 52 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 411.81 15.07 6.21 6.21 Total: -1.00 -33.91 411.81 -10.45 -44.36 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -8.51 Total: 12.72 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -2.76 Total: -8.62 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.20 Total: -56.63 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.56 Total: -15.86 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.91 -10.45 -44.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665964352.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.606 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds