Wall clock time and date at job start Wed Apr 1 2020 04:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38269 * 119.94436 * 2 1 4 4 C 1.38148 * 120.05481 * 180.02562 * 3 2 1 5 5 C 1.38728 * 119.94473 * 0.02562 * 4 3 2 6 6 O 1.35902 * 120.05708 * 180.02562 * 5 4 3 7 7 C 1.42899 * 117.00256 * 185.20812 * 6 5 4 8 8 H 1.08994 * 109.47344 * 35.13961 * 7 6 5 9 9 C 1.53006 * 109.46740 * 275.14042 * 7 6 5 10 10 C 1.50698 * 109.47592 * 155.14234 * 7 6 5 11 11 O 1.21285 * 119.99825 * 4.99696 * 10 7 6 12 12 N 1.34766 * 120.00482 * 184.99761 * 10 7 6 13 13 C 1.46502 * 120.00563 * 174.97484 * 12 10 7 14 14 C 1.53003 * 110.01495 * 65.32221 * 13 12 10 15 15 N 1.46500 * 109.46730 * 58.27750 * 14 13 12 16 16 C 1.36942 * 119.99500 * 174.93441 * 15 14 13 17 17 H 1.08002 * 120.00266 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99657 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00148 * 359.72117 * 18 16 15 20 20 Si 1.86796 * 119.99784 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47278 * 59.99579 * 20 18 16 22 22 H 1.48495 * 109.47112 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47057 * 300.00089 * 20 18 16 24 24 C 1.54261 * 110.07399 * 186.74403 * 13 12 10 25 25 C 1.54893 * 104.19513 * 95.69554 * 24 13 12 26 26 C 1.54894 * 102.74909 * 37.94328 * 25 24 13 27 27 C 1.53881 * 110.02835 * 303.93575 * 13 12 10 28 28 C 1.38737 * 119.88950 * 0.27000 * 5 4 3 29 29 C 1.38146 * 119.93906 * 359.43289 * 28 5 4 30 30 H 1.09001 * 109.47555 * 89.99657 * 1 2 3 31 31 H 1.09000 * 109.47168 * 209.99673 * 1 2 3 32 32 H 1.09001 * 109.47032 * 329.99986 * 1 2 3 33 33 H 1.07992 * 119.97189 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.02945 * 180.02562 * 4 3 2 35 35 H 1.08994 * 109.47133 * 179.97438 * 9 7 6 36 36 H 1.09004 * 109.46973 * 299.99956 * 9 7 6 37 37 H 1.08999 * 109.47268 * 59.99519 * 9 7 6 38 38 H 0.97005 * 119.99937 * 354.97680 * 12 10 7 39 39 H 1.08995 * 109.46950 * 298.27139 * 14 13 12 40 40 H 1.09005 * 109.46748 * 178.27342 * 14 13 12 41 41 H 0.96991 * 120.00209 * 354.92822 * 15 14 13 42 42 H 0.96992 * 120.00115 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.48312 * 214.37149 * 24 13 12 44 44 H 1.08997 * 110.48734 * 337.01634 * 24 13 12 45 45 H 1.08996 * 110.75883 * 279.62287 * 25 24 13 46 46 H 1.09005 * 110.75530 * 156.25284 * 25 24 13 47 47 H 1.08996 * 110.48043 * 203.37932 * 26 25 24 48 48 H 1.08993 * 110.48762 * 80.73520 * 26 25 24 49 49 H 1.08995 * 110.03131 * 359.94526 * 27 13 12 50 50 H 1.08997 * 110.03301 * 121.38276 * 27 13 12 51 51 H 1.07997 * 120.02677 * 179.72011 * 28 5 4 52 52 H 1.08000 * 119.96430 * 180.27063 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2008 -0.0005 5 6 4.2734 0.0000 -0.0016 6 8 5.6324 0.0000 -0.0016 7 6 6.2811 -1.2679 -0.1183 8 1 5.6974 -1.9160 -0.7719 9 6 6.3975 -1.9105 1.2654 10 6 7.6579 -1.0761 -0.7004 11 8 8.0803 0.0426 -0.9027 12 7 8.4197 -2.1477 -0.9963 13 6 9.7116 -1.9666 -1.6631 14 6 10.6740 -1.2117 -0.7439 15 7 10.8396 -1.9563 0.5069 16 6 11.7387 -1.5259 1.4459 17 1 12.3260 -0.6379 1.2642 18 6 11.8953 -2.2311 2.6312 19 7 11.1757 -3.3102 2.8550 20 14 13.1222 -1.6445 3.9118 21 1 12.7586 -0.2745 4.3547 22 1 13.0983 -2.5638 5.0778 23 1 14.4846 -1.6285 3.3212 24 6 10.3086 -3.3375 -2.0421 25 6 9.8826 -3.5426 -3.5171 26 6 10.0098 -2.1176 -4.1110 27 6 9.5215 -1.1909 -2.9785 28 6 3.5785 -1.2008 -0.0078 29 6 2.1971 -1.1980 -0.0011 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6558 2.1326 -0.0004 34 1 4.1173 2.1369 -0.0001 35 1 6.8919 -2.8777 1.1764 36 1 6.9813 -1.2623 1.9190 37 1 5.4017 -2.0491 1.6865 38 1 8.1127 -3.0391 -0.7678 39 1 10.2694 -0.2230 -0.5275 40 1 11.6411 -1.1088 -1.2363 41 1 10.3125 -2.7539 0.6699 42 1 11.2848 -3.8027 3.6834 43 1 11.3952 -3.3167 -1.9582 44 1 9.8913 -4.1228 -1.4118 45 1 8.8530 -3.8953 -3.5764 46 1 10.5583 -4.2331 -4.0219 47 1 9.3745 -2.0128 -4.9903 48 1 11.0481 -1.8999 -4.3611 49 1 8.4681 -0.9502 -3.1211 50 1 10.1150 -0.2769 -2.9620 51 1 4.1172 -2.1368 -0.0132 52 1 1.6558 -2.1326 -0.0015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665964352.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:50 Heat of formation + Delta-G solvation = -65.155606 kcal Electronic energy + Delta-G solvation = -31272.472314 eV Core-core repulsion = 27236.226086 eV Total energy + Delta-G solvation = -4036.246228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.87001 -40.96533 -39.22088 -38.21547 -36.17724 -34.82689 -33.54727 -32.91946 -32.31436 -31.66454 -29.80429 -29.42706 -27.37742 -26.37487 -25.47340 -24.09690 -23.88891 -22.49479 -21.78334 -21.29667 -20.36014 -19.34107 -19.12488 -18.44075 -17.35146 -16.75007 -16.63900 -16.53844 -16.27835 -16.13760 -15.62179 -15.43981 -15.29511 -15.13157 -15.01457 -14.60688 -14.47054 -14.35937 -14.09099 -14.08238 -13.64265 -13.43293 -13.26034 -13.20586 -12.89148 -12.80741 -12.69196 -12.64717 -12.39545 -12.27040 -12.22031 -12.00203 -11.90341 -11.85734 -11.79489 -11.73929 -11.66909 -11.40277 -11.02969 -10.60475 -10.00979 -9.96080 -9.01053 -8.95821 -7.96033 -5.21896 0.37954 0.44035 1.43436 1.46113 1.51873 1.53555 1.64114 2.53307 2.60165 2.78448 3.35174 3.45559 3.57001 3.68461 3.69452 3.84115 3.89299 3.94008 3.96982 4.10221 4.17359 4.33124 4.38971 4.46073 4.49974 4.51655 4.54408 4.61280 4.68038 4.70322 4.80461 4.83853 4.85540 4.91787 4.91966 5.07506 5.08993 5.10418 5.11287 5.18807 5.20337 5.25429 5.34511 5.38376 5.39918 5.46091 5.49866 5.68147 5.69042 5.87240 6.26609 6.37170 6.58300 7.24797 7.34564 8.07526 8.38218 9.26444 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.010043 B = 0.002992 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.414097 B = 9355.684675 C =11179.218314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.132 4.132 3 C -0.084 4.084 4 C -0.169 4.169 5 C 0.100 3.900 6 O -0.316 6.316 7 C 0.076 3.924 8 H 0.129 0.871 9 C -0.166 4.166 10 C 0.516 3.484 11 O -0.559 6.559 12 N -0.695 5.695 13 C 0.175 3.825 14 C 0.147 3.853 15 N -0.727 5.727 16 C -0.247 4.247 17 H 0.060 0.940 18 C -0.065 4.065 19 N -0.959 5.959 20 Si 0.966 3.034 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.278 1.278 24 C -0.113 4.113 25 C -0.112 4.112 26 C -0.117 4.117 27 C -0.113 4.113 28 C -0.211 4.211 29 C -0.082 4.082 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.149 0.851 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.410 0.590 39 H 0.004 0.996 40 H 0.023 0.977 41 H 0.379 0.621 42 H 0.252 0.748 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.052 0.948 51 H 0.146 0.854 52 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.743 -1.895 -12.661 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.132 4.132 3 C -0.101 4.101 4 C -0.188 4.188 5 C 0.055 3.945 6 O -0.230 6.230 7 C 0.017 3.983 8 H 0.146 0.854 9 C -0.224 4.224 10 C 0.302 3.698 11 O -0.437 6.437 12 N -0.348 5.348 13 C 0.089 3.911 14 C 0.019 3.981 15 N -0.370 5.370 16 C -0.379 4.379 17 H 0.078 0.922 18 C -0.258 4.258 19 N -0.609 5.609 20 Si 0.795 3.205 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.204 1.204 24 C -0.151 4.151 25 C -0.149 4.149 26 C -0.155 4.155 27 C -0.152 4.152 28 C -0.229 4.229 29 C -0.100 4.100 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.166 0.834 34 H 0.140 0.860 35 H 0.113 0.887 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.247 0.753 39 H 0.022 0.978 40 H 0.041 0.959 41 H 0.212 0.788 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.088 0.912 49 H 0.079 0.921 50 H 0.071 0.929 51 H 0.163 0.837 52 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -20.175 -0.819 -12.737 23.873 hybrid contribution 0.951 0.027 1.452 1.736 sum -19.224 -0.792 -11.285 22.305 Atomic orbital electron populations 1.20760 0.88900 1.03632 1.03002 1.20240 0.97838 0.92698 1.02408 1.21119 0.91987 0.99297 0.97731 1.20649 0.94912 0.96181 1.07057 1.19404 0.81619 0.95647 0.97835 1.86192 1.17441 1.31298 1.88048 1.22249 0.91305 0.85279 0.99510 0.85354 1.22255 1.04262 1.01552 0.94297 1.20456 0.86945 0.84945 0.77493 1.90687 1.73849 1.25658 1.53486 1.45841 1.19215 1.09103 1.60682 1.21199 0.81823 0.96886 0.91235 1.21185 0.95601 0.94267 0.87061 1.42215 1.47415 1.31108 1.16277 1.19472 1.14023 1.07208 0.97176 0.92165 1.25374 1.02252 0.98305 0.99885 1.69744 1.44749 1.19966 1.26477 0.85334 0.79307 0.76952 0.78889 1.21482 1.21481 1.20415 1.22529 1.00915 0.93705 0.97998 1.22504 1.02411 0.96756 0.93235 1.22377 1.01722 0.94400 0.96975 1.22344 1.01227 0.98388 0.93275 1.21516 0.96188 0.96874 1.08369 1.21188 0.92740 0.99013 0.97067 0.90478 0.90584 0.90883 0.83357 0.86024 0.88707 0.94107 0.88902 0.75254 0.97777 0.95900 0.78808 0.93923 0.91299 0.90605 0.90035 0.89617 0.89850 0.91159 0.92118 0.92871 0.83676 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 71.23 0.71 -0.37 16 2 C -0.13 -2.20 5.88 -19.85 -0.12 -2.32 16 3 C -0.08 -1.60 9.69 22.26 0.22 -1.39 16 4 C -0.17 -4.30 9.99 22.37 0.22 -4.07 16 5 C 0.10 2.73 6.60 22.51 0.15 2.88 16 6 O -0.32 -10.60 9.34 -73.46 -0.69 -11.28 16 7 C 0.08 2.16 2.64 29.85 0.08 2.24 16 8 H 0.13 2.63 6.29 -2.39 -0.02 2.61 16 9 C -0.17 -4.57 9.12 71.98 0.66 -3.91 16 10 C 0.52 18.32 6.22 87.66 0.55 18.86 16 11 O -0.56 -25.21 13.74 15.94 0.22 -24.99 16 12 N -0.70 -21.44 4.61 -419.65 -1.94 -23.38 16 13 C 0.17 5.79 0.56 4.33 0.00 5.79 16 14 C 0.15 6.57 4.66 86.38 0.40 6.98 16 15 N -0.73 -37.74 5.25 -343.44 -1.80 -39.55 16 16 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 17 H 0.06 3.52 7.83 -2.91 -0.02 3.50 16 18 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 19 N -0.96 -57.46 13.06 21.65 0.28 -57.18 16 20 Si 0.97 47.47 29.55 68.60 2.03 49.50 16 21 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 24 C -0.11 -3.16 5.59 31.67 0.18 -2.98 16 25 C -0.11 -2.21 6.91 31.89 0.22 -1.99 16 26 C -0.12 -2.53 6.83 31.67 0.22 -2.31 16 27 C -0.11 -3.38 5.22 31.32 0.16 -3.21 16 28 C -0.21 -4.43 8.25 22.37 0.18 -4.24 16 29 C -0.08 -1.40 9.69 22.25 0.22 -1.18 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 32 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16 33 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.12 3.15 8.06 -2.91 -0.02 3.13 16 35 H 0.09 2.32 7.77 -2.39 -0.02 2.30 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 2.09 6.94 -2.39 -0.02 2.07 16 38 H 0.41 10.15 7.85 -92.70 -0.73 9.42 16 39 H 0.00 0.23 6.48 -2.39 -0.02 0.21 16 40 H 0.02 1.04 8.11 -2.38 -0.02 1.02 16 41 H 0.38 19.74 7.20 -92.71 -0.67 19.07 16 42 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 43 H 0.07 2.19 7.83 -2.38 -0.02 2.17 16 44 H 0.08 2.05 7.70 -2.39 -0.02 2.03 16 45 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 47 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.06 1.87 6.98 -2.39 -0.02 1.86 16 50 H 0.05 1.77 7.67 -2.39 -0.02 1.75 16 51 H 0.15 2.46 5.44 -2.91 -0.02 2.44 16 52 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -77.01 411.81 2.99 -74.02 By element: Atomic # 1 Polarization: 41.47 SS G_CDS: -0.47 Total: 41.00 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 5.35 Total: -8.15 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -3.46 Total: -120.10 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.47 Total: -36.27 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -77.01 2.99 -74.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665964352.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.867 kcal (2) G-P(sol) polarization free energy of solvation -77.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds