Wall clock time and date at job start Wed Apr 1 2020 05:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00008 * 2 1 4 4 H 1.08998 * 109.47236 * 30.00295 * 3 2 1 5 5 C 1.53003 * 109.46785 * 150.00396 * 3 2 1 6 6 C 1.50696 * 109.46987 * 294.99699 * 5 3 2 7 7 C 1.38232 * 120.00379 * 269.72845 * 6 5 3 8 8 C 1.38234 * 120.00227 * 179.81036 * 7 6 5 9 9 C 1.38236 * 119.99969 * 0.39700 * 8 7 6 10 10 C 1.38229 * 119.99892 * 359.85994 * 9 8 7 11 11 C 1.38235 * 120.00151 * 359.94838 * 10 9 8 12 12 C 1.50696 * 109.47365 * 270.00101 * 3 2 1 13 13 O 1.21291 * 120.00152 * 355.00072 * 12 3 2 14 14 N 1.34775 * 120.00148 * 175.00117 * 12 3 2 15 15 C 1.46508 * 119.99912 * 180.02562 * 14 12 3 16 16 H 1.09002 * 110.88809 * 34.29855 * 15 14 12 17 17 C 1.54907 * 111.00222 * 270.41786 * 15 14 12 18 18 N 1.47423 * 104.83481 * 278.89414 * 17 15 14 19 19 C 1.36933 * 125.65042 * 155.83532 * 18 17 15 20 20 H 1.08000 * 120.00409 * 180.02562 * 19 18 17 21 21 C 1.38819 * 119.99940 * 0.02719 * 19 18 17 22 22 N 1.31618 * 119.99657 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99997 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47126 * 90.00226 * 23 21 19 25 25 H 1.48499 * 109.47112 * 210.00592 * 23 21 19 26 26 H 1.48503 * 109.47269 * 330.00474 * 23 21 19 27 27 C 1.47020 * 108.70217 * 335.87965 * 18 17 15 28 28 C 1.54328 * 107.27319 * 1.05147 * 27 18 17 29 29 C 1.52995 * 110.71963 * 263.83613 * 28 27 18 30 30 C 1.53003 * 110.72018 * 140.55794 * 28 27 18 31 31 H 1.09004 * 109.47338 * 300.00166 * 1 2 3 32 32 H 1.09004 * 109.47415 * 59.99628 * 1 2 3 33 33 H 1.08995 * 109.47625 * 179.97438 * 1 2 3 34 34 H 1.08992 * 109.47565 * 55.00172 * 5 3 2 35 35 H 1.09002 * 109.47114 * 175.00148 * 5 3 2 36 36 H 1.07999 * 119.99716 * 0.02562 * 7 6 5 37 37 H 1.08003 * 120.00240 * 180.23455 * 8 7 6 38 38 H 1.07997 * 119.99832 * 179.83484 * 9 8 7 39 39 H 1.08003 * 120.00289 * 179.97438 * 10 9 8 40 40 H 1.08001 * 120.00337 * 180.02562 * 11 10 9 41 41 H 0.96992 * 120.00162 * 359.97438 * 14 12 3 42 42 H 1.09003 * 110.37198 * 37.73899 * 17 15 14 43 43 H 1.08998 * 110.36462 * 159.95123 * 17 15 14 44 44 H 0.96998 * 119.99257 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.88593 * 120.47259 * 27 18 17 46 46 H 1.09005 * 109.87776 * 241.47981 * 27 18 17 47 47 H 1.09004 * 109.47225 * 173.52327 * 29 28 27 48 48 H 1.09003 * 109.46992 * 293.51687 * 29 28 27 49 49 H 1.08999 * 109.47522 * 53.52180 * 29 28 27 50 50 H 1.08999 * 109.47257 * 306.48312 * 30 28 27 51 51 H 1.08998 * 109.46694 * 66.47945 * 30 28 27 52 52 H 1.08996 * 109.47026 * 186.47725 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 3.3589 1.2631 0.7212 6 6 3.1417 0.9235 2.1732 7 6 2.9465 1.9327 3.0975 8 6 2.7433 1.6209 4.4288 9 6 2.7434 0.3003 4.8372 10 6 2.9438 -0.7087 3.9138 11 6 3.1431 -0.3971 2.5819 12 6 2.2145 1.7644 -1.4208 13 8 1.9791 1.0106 -2.3414 14 7 2.6588 3.0125 -1.6685 15 6 2.8569 3.4588 -3.0498 16 1 2.1135 3.0151 -3.7120 17 6 4.2932 3.1410 -3.5354 18 7 5.1254 4.2287 -2.9899 19 6 6.4711 4.1586 -2.7464 20 1 6.9923 5.0144 -2.3433 21 6 7.1655 2.9876 -3.0175 22 7 6.5305 1.9448 -3.5092 23 14 9.0013 2.8922 -2.6860 24 1 9.2297 2.4130 -1.2991 25 1 9.6293 1.9487 -3.6455 26 1 9.6046 4.2393 -2.8498 27 6 4.2711 5.4008 -2.7496 28 6 2.8318 5.0073 -3.1437 29 6 2.5193 5.4579 -4.5720 30 6 1.8207 5.5932 -2.1561 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.9931 0.5051 0.2617 35 1 3.8428 2.2369 0.6443 36 1 2.9494 2.9646 2.7789 37 1 2.5871 2.4092 5.1503 38 1 2.5873 0.0568 5.8777 39 1 2.9443 -1.7405 4.2329 40 1 3.2993 -1.1854 1.8603 41 1 2.8468 3.6154 -0.9323 42 1 4.6220 2.1785 -3.1433 43 1 4.3338 3.1399 -4.6246 44 1 7.0158 1.1267 -3.6990 45 1 4.3050 5.6744 -1.6951 46 1 4.6096 6.2377 -3.3606 47 1 1.5446 5.0713 -4.8700 48 1 2.5067 6.5470 -4.6148 49 1 3.2838 5.0765 -5.2489 50 1 2.0961 5.3065 -1.1412 51 1 1.8198 6.6800 -2.2391 52 1 0.8260 5.2105 -2.3846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734154300.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:36 Heat of formation + Delta-G solvation = -32.026516 kcal Electronic energy + Delta-G solvation = -32091.694991 eV Core-core repulsion = 28056.885348 eV Total energy + Delta-G solvation = -4034.809643 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.10666 -39.19937 -38.30421 -36.79823 -33.91051 -33.55478 -32.73115 -30.88502 -30.70220 -29.54104 -28.00065 -26.82966 -26.26235 -25.61218 -24.51923 -23.10493 -22.55288 -21.12350 -20.54477 -19.69776 -18.73733 -17.24968 -16.83618 -16.75269 -16.64299 -15.64518 -15.35296 -14.94008 -14.89678 -14.69639 -14.43568 -13.96096 -13.81985 -13.76722 -13.43022 -13.34367 -13.18262 -12.93113 -12.71009 -12.60800 -12.22106 -12.12176 -11.92669 -11.76340 -11.67361 -11.31893 -11.17897 -11.15720 -11.06275 -10.97715 -10.84685 -10.76571 -10.41102 -10.33918 -10.19046 -9.95270 -9.79195 -9.68151 -9.06158 -8.90789 -8.69358 -8.59028 -8.33440 -6.80305 -5.61738 -3.05113 1.32728 1.41071 3.02329 3.40396 3.45559 3.47040 3.48122 3.80163 3.91514 4.49538 4.71089 4.86083 4.95715 4.98118 4.99716 5.10038 5.13795 5.21106 5.24266 5.28855 5.37762 5.42666 5.50789 5.52985 5.53261 5.62612 5.69509 5.73044 5.79208 5.86293 5.92708 6.01572 6.07335 6.09324 6.17285 6.17663 6.24809 6.40639 6.44649 6.48249 6.49973 6.60306 6.66693 6.69923 6.75669 6.98034 7.00383 7.10989 7.51216 7.63516 7.89051 8.03876 8.40492 8.72200 9.23217 9.84764 10.48825 11.40587 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.008744 B = 0.003955 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.292846 B = 7078.796483 C = 8628.593170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.352 6.352 3 C 0.086 3.914 4 H 0.080 0.920 5 C -0.076 4.076 6 C -0.073 4.073 7 C -0.118 4.118 8 C -0.123 4.123 9 C -0.128 4.128 10 C -0.123 4.123 11 C -0.097 4.097 12 C 0.490 3.510 13 O -0.527 6.527 14 N -0.700 5.700 15 C 0.124 3.876 16 H 0.085 0.915 17 C 0.146 3.854 18 N -0.600 5.600 19 C -0.226 4.226 20 H 0.076 0.924 21 C -0.007 4.007 22 N -0.915 5.915 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.144 3.856 28 C -0.087 4.087 29 C -0.128 4.128 30 C -0.130 4.130 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.394 0.606 42 H 0.114 0.886 43 H 0.019 0.981 44 H 0.252 0.748 45 H 0.021 0.979 46 H 0.023 0.977 47 H 0.050 0.950 48 H 0.054 0.946 49 H 0.064 0.936 50 H 0.051 0.949 51 H 0.054 0.946 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.327 1.496 12.670 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.024 3.976 4 H 0.098 0.902 5 C -0.114 4.114 6 C -0.073 4.073 7 C -0.136 4.136 8 C -0.141 4.141 9 C -0.146 4.146 10 C -0.141 4.141 11 C -0.115 4.115 12 C 0.274 3.726 13 O -0.403 6.403 14 N -0.352 5.352 15 C 0.019 3.981 16 H 0.103 0.897 17 C 0.021 3.979 18 N -0.326 5.326 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.563 5.563 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.018 3.982 28 C -0.088 4.088 29 C -0.186 4.186 30 C -0.188 4.188 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.143 0.857 41 H 0.229 0.771 42 H 0.131 0.869 43 H 0.037 0.963 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.041 0.959 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.070 0.930 51 H 0.073 0.927 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.206 0.611 11.960 17.828 hybrid contribution 0.951 0.518 0.440 1.169 sum -12.255 1.129 12.401 17.471 Atomic orbital electron populations 1.22787 0.81160 1.02832 0.99638 1.87992 1.19557 1.24982 1.94388 1.21978 0.96283 0.86719 0.92639 0.90239 1.20686 0.94951 1.04777 0.90978 1.19768 0.99130 0.93537 0.94838 1.21089 1.00389 0.98998 0.93159 1.21079 1.00787 0.96422 0.95852 1.21105 1.01036 0.93118 0.99313 1.21143 1.00405 0.99146 0.93404 1.21137 0.98432 0.96187 0.95758 1.21077 0.77812 0.82074 0.91597 1.90698 1.50626 1.53196 1.45797 1.45837 1.66392 1.13845 1.09123 1.22506 1.00937 0.92425 0.82247 0.89736 1.22297 0.84246 0.95908 0.95475 1.44447 1.04473 1.08642 1.75049 1.19008 0.82244 0.97911 1.36293 0.90633 1.24772 0.98045 0.96206 1.01255 1.69805 1.33781 1.03189 1.49545 0.86150 0.85008 0.77243 0.77533 1.21651 1.21690 1.20822 1.21396 0.88323 0.91453 0.97071 1.21839 0.96079 0.94929 0.96002 1.21684 1.01222 1.00445 0.95245 1.21711 0.98331 1.00277 0.98458 0.94393 0.93810 0.89555 0.88889 0.88610 0.86056 0.86331 0.86512 0.86313 0.85689 0.77105 0.86884 0.96317 0.93674 0.96166 0.95937 0.93127 0.92732 0.91736 0.92984 0.92737 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.81 101.05 1.09 1.48 16 2 O -0.35 -5.39 9.38 -55.09 -0.52 -5.91 16 3 C 0.09 1.23 2.50 -27.88 -0.07 1.16 16 4 H 0.08 0.93 7.79 -51.93 -0.40 0.53 16 5 C -0.08 -1.09 5.03 -27.88 -0.14 -1.23 16 6 C -0.07 -0.93 4.97 -104.63 -0.52 -1.45 16 7 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 8 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 9 C -0.13 -1.28 10.05 -39.59 -0.40 -1.68 16 10 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 11 C -0.10 -1.22 9.40 -39.58 -0.37 -1.59 16 12 C 0.49 8.78 7.13 -10.99 -0.08 8.70 16 13 O -0.53 -11.68 16.20 -14.31 -0.23 -11.91 16 14 N -0.70 -11.84 4.52 -51.73 -0.23 -12.07 16 15 C 0.12 2.35 2.61 -65.78 -0.17 2.18 16 16 H 0.08 1.66 7.53 -51.93 -0.39 1.27 16 17 C 0.15 3.55 5.27 -2.53 -0.01 3.53 16 18 N -0.60 -14.64 3.39 -170.07 -0.58 -15.22 16 19 C -0.23 -6.13 10.27 -15.06 -0.15 -6.29 16 20 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 22 N -0.92 -26.86 10.09 55.49 0.56 -26.30 16 23 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.14 2.80 6.41 -3.06 -0.02 2.78 16 28 C -0.09 -1.41 0.80 -152.67 -0.12 -1.53 16 29 C -0.13 -1.91 8.41 37.15 0.31 -1.60 16 30 C -0.13 -1.64 8.07 37.16 0.30 -1.34 16 31 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.53 8.08 -51.93 -0.42 1.11 16 35 H 0.10 1.33 7.71 -51.93 -0.40 0.93 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.39 5.84 6.73 -40.82 -0.27 5.56 16 42 H 0.11 3.20 5.87 -51.93 -0.30 2.90 16 43 H 0.02 0.50 7.81 -51.93 -0.41 0.09 16 44 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.02 0.38 7.76 -51.93 -0.40 -0.02 16 46 H 0.02 0.45 7.85 -51.93 -0.41 0.04 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.06 1.10 7.58 -51.93 -0.39 0.71 16 50 H 0.05 0.61 6.42 -51.93 -0.33 0.28 16 51 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 52 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 415.98 15.07 6.27 6.27 Total: -1.00 -32.88 415.98 -10.14 -43.02 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -8.76 Total: 7.34 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.63 Total: -2.25 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.25 Total: -53.59 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.75 Total: -17.82 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.88 -10.14 -43.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734154300.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.991 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds