Wall clock time and date at job start Wed Apr 1 2020 05:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00008 * 2 1 4 4 H 1.08998 * 109.47236 * 30.00295 * 3 2 1 5 5 C 1.53003 * 109.46785 * 150.00396 * 3 2 1 6 6 C 1.50696 * 109.46987 * 294.99699 * 5 3 2 7 7 C 1.38232 * 120.00379 * 269.72845 * 6 5 3 8 8 C 1.38234 * 120.00227 * 179.81036 * 7 6 5 9 9 C 1.38236 * 119.99969 * 0.39700 * 8 7 6 10 10 C 1.38229 * 119.99892 * 359.85994 * 9 8 7 11 11 C 1.38235 * 120.00151 * 359.94838 * 10 9 8 12 12 C 1.50696 * 109.47365 * 270.00101 * 3 2 1 13 13 O 1.21291 * 120.00152 * 355.00072 * 12 3 2 14 14 N 1.34775 * 120.00148 * 175.00117 * 12 3 2 15 15 C 1.46508 * 119.99912 * 180.02562 * 14 12 3 16 16 H 1.09002 * 110.88809 * 34.29855 * 15 14 12 17 17 C 1.54907 * 111.00222 * 270.41786 * 15 14 12 18 18 N 1.47423 * 104.83481 * 278.89414 * 17 15 14 19 19 C 1.36933 * 125.65042 * 155.83532 * 18 17 15 20 20 H 1.08000 * 120.00409 * 180.02562 * 19 18 17 21 21 C 1.38819 * 119.99940 * 0.02719 * 19 18 17 22 22 N 1.31618 * 119.99657 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99997 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47126 * 90.00226 * 23 21 19 25 25 H 1.48499 * 109.47112 * 210.00592 * 23 21 19 26 26 H 1.48503 * 109.47269 * 330.00474 * 23 21 19 27 27 C 1.47020 * 108.70217 * 335.87965 * 18 17 15 28 28 C 1.54328 * 107.27319 * 1.05147 * 27 18 17 29 29 C 1.52995 * 110.71963 * 263.83613 * 28 27 18 30 30 C 1.53003 * 110.72018 * 140.55794 * 28 27 18 31 31 H 1.09004 * 109.47338 * 300.00166 * 1 2 3 32 32 H 1.09004 * 109.47415 * 59.99628 * 1 2 3 33 33 H 1.08995 * 109.47625 * 179.97438 * 1 2 3 34 34 H 1.08992 * 109.47565 * 55.00172 * 5 3 2 35 35 H 1.09002 * 109.47114 * 175.00148 * 5 3 2 36 36 H 1.07999 * 119.99716 * 0.02562 * 7 6 5 37 37 H 1.08003 * 120.00240 * 180.23455 * 8 7 6 38 38 H 1.07997 * 119.99832 * 179.83484 * 9 8 7 39 39 H 1.08003 * 120.00289 * 179.97438 * 10 9 8 40 40 H 1.08001 * 120.00337 * 180.02562 * 11 10 9 41 41 H 0.96992 * 120.00162 * 359.97438 * 14 12 3 42 42 H 1.09003 * 110.37198 * 37.73899 * 17 15 14 43 43 H 1.08998 * 110.36462 * 159.95123 * 17 15 14 44 44 H 0.96998 * 119.99257 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.88593 * 120.47259 * 27 18 17 46 46 H 1.09005 * 109.87776 * 241.47981 * 27 18 17 47 47 H 1.09004 * 109.47225 * 173.52327 * 29 28 27 48 48 H 1.09003 * 109.46992 * 293.51687 * 29 28 27 49 49 H 1.08999 * 109.47522 * 53.52180 * 29 28 27 50 50 H 1.08999 * 109.47257 * 306.48312 * 30 28 27 51 51 H 1.08998 * 109.46694 * 66.47945 * 30 28 27 52 52 H 1.08996 * 109.47026 * 186.47725 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 3.3589 1.2631 0.7212 6 6 3.1417 0.9235 2.1732 7 6 2.9465 1.9327 3.0975 8 6 2.7433 1.6209 4.4288 9 6 2.7434 0.3003 4.8372 10 6 2.9438 -0.7087 3.9138 11 6 3.1431 -0.3971 2.5819 12 6 2.2145 1.7644 -1.4208 13 8 1.9791 1.0106 -2.3414 14 7 2.6588 3.0125 -1.6685 15 6 2.8569 3.4588 -3.0498 16 1 2.1135 3.0151 -3.7120 17 6 4.2932 3.1410 -3.5354 18 7 5.1254 4.2287 -2.9899 19 6 6.4711 4.1586 -2.7464 20 1 6.9923 5.0144 -2.3433 21 6 7.1655 2.9876 -3.0175 22 7 6.5305 1.9448 -3.5092 23 14 9.0013 2.8922 -2.6860 24 1 9.2297 2.4130 -1.2991 25 1 9.6293 1.9487 -3.6455 26 1 9.6046 4.2393 -2.8498 27 6 4.2711 5.4008 -2.7496 28 6 2.8318 5.0073 -3.1437 29 6 2.5193 5.4579 -4.5720 30 6 1.8207 5.5932 -2.1561 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.9931 0.5051 0.2617 35 1 3.8428 2.2369 0.6443 36 1 2.9494 2.9646 2.7789 37 1 2.5871 2.4092 5.1503 38 1 2.5873 0.0568 5.8777 39 1 2.9443 -1.7405 4.2329 40 1 3.2993 -1.1854 1.8603 41 1 2.8468 3.6154 -0.9323 42 1 4.6220 2.1785 -3.1433 43 1 4.3338 3.1399 -4.6246 44 1 7.0158 1.1267 -3.6990 45 1 4.3050 5.6744 -1.6951 46 1 4.6096 6.2377 -3.3606 47 1 1.5446 5.0713 -4.8700 48 1 2.5067 6.5470 -4.6148 49 1 3.2838 5.0765 -5.2489 50 1 2.0961 5.3065 -1.1412 51 1 1.8198 6.6800 -2.2391 52 1 0.8260 5.2105 -2.3846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734154300.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:35 Heat of formation + Delta-G solvation = -51.091743 kcal Electronic energy + Delta-G solvation = -32092.521721 eV Core-core repulsion = 28056.885348 eV Total energy + Delta-G solvation = -4035.636373 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.47958 -40.29413 -39.59086 -38.11022 -35.67820 -34.89082 -33.98761 -32.59141 -31.70484 -30.70614 -29.50555 -28.02860 -27.42112 -27.24330 -25.81617 -24.66843 -23.38006 -22.37422 -21.97734 -21.22661 -20.14629 -18.69827 -18.53212 -18.03713 -17.61774 -17.06854 -16.55841 -16.50340 -15.93098 -15.83904 -15.69053 -15.59136 -15.27894 -15.24491 -14.63563 -14.50968 -14.21649 -14.17295 -13.76619 -13.72787 -13.65006 -13.62290 -13.21440 -13.02907 -12.99682 -12.86837 -12.71224 -12.61781 -12.54789 -12.16284 -12.11009 -11.95962 -11.78357 -11.77284 -11.74769 -11.53485 -11.41376 -11.34691 -10.77222 -10.32905 -9.93839 -9.74392 -9.55306 -8.83118 -7.74126 -5.19081 0.46962 0.57707 1.44554 1.45808 1.54590 1.60298 2.15475 2.49333 2.77643 2.94649 3.35689 3.56111 3.62016 3.70350 3.85295 3.96993 4.00760 4.02937 4.08966 4.11821 4.24613 4.36799 4.42792 4.43308 4.46485 4.53788 4.54636 4.69907 4.75181 4.80058 4.83966 4.84479 4.89611 4.90989 4.94221 5.04974 5.11626 5.18873 5.21566 5.24265 5.31407 5.34855 5.50344 5.54833 5.63331 5.68599 5.69488 5.78041 5.85187 6.03866 6.18931 6.32686 6.63616 7.10656 7.31222 7.81090 8.44664 9.26039 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.008744 B = 0.003955 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.292846 B = 7078.796483 C = 8628.593170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.376 6.376 3 C 0.097 3.903 4 H 0.118 0.882 5 C -0.069 4.069 6 C -0.087 4.087 7 C -0.123 4.123 8 C -0.123 4.123 9 C -0.127 4.127 10 C -0.129 4.129 11 C -0.118 4.118 12 C 0.485 3.515 13 O -0.577 6.577 14 N -0.688 5.688 15 C 0.136 3.864 16 H 0.076 0.924 17 C 0.155 3.845 18 N -0.616 5.616 19 C -0.230 4.230 20 H 0.085 0.915 21 C -0.066 4.066 22 N -0.948 5.948 23 Si 0.972 3.028 24 H -0.287 1.287 25 H -0.301 1.301 26 H -0.267 1.267 27 C 0.138 3.862 28 C -0.073 4.073 29 C -0.127 4.127 30 C -0.124 4.124 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.109 0.891 41 H 0.408 0.592 42 H 0.068 0.932 43 H -0.019 1.019 44 H 0.241 0.759 45 H 0.039 0.961 46 H 0.024 0.976 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.031 0.969 50 H 0.062 0.938 51 H 0.077 0.923 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.976 4.151 15.930 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.036 3.964 4 H 0.135 0.865 5 C -0.106 4.106 6 C -0.087 4.087 7 C -0.140 4.140 8 C -0.141 4.141 9 C -0.144 4.144 10 C -0.146 4.146 11 C -0.136 4.136 12 C 0.271 3.729 13 O -0.456 6.456 14 N -0.340 5.340 15 C 0.030 3.970 16 H 0.094 0.906 17 C 0.028 3.972 18 N -0.342 5.342 19 C -0.359 4.359 20 H 0.103 0.897 21 C -0.258 4.258 22 N -0.598 5.598 23 Si 0.801 3.199 24 H -0.214 1.214 25 H -0.228 1.228 26 H -0.192 1.192 27 C 0.014 3.986 28 C -0.074 4.074 29 C -0.185 4.185 30 C -0.181 4.181 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.157 0.843 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.127 0.873 41 H 0.245 0.755 42 H 0.086 0.914 43 H -0.001 1.001 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.042 0.958 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.050 0.950 50 H 0.081 0.919 51 H 0.096 0.904 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.870 3.330 15.260 21.566 hybrid contribution 1.463 -0.307 -0.573 1.601 sum -13.407 3.023 14.687 20.115 Atomic orbital electron populations 1.22977 0.79458 1.04027 1.00377 1.87978 1.21558 1.25567 1.94263 1.21969 0.97113 0.87249 0.90093 0.86496 1.20547 0.94263 1.03514 0.92308 1.19648 1.00970 0.94208 0.93915 1.21311 0.99963 0.99355 0.93422 1.21445 0.99527 0.97294 0.95814 1.21481 0.99623 0.92891 1.00442 1.21371 1.00014 1.00539 0.92723 1.21158 0.99870 0.95976 0.96600 1.21891 0.76537 0.81603 0.92826 1.90670 1.52805 1.54446 1.47722 1.45715 1.65667 1.13978 1.08686 1.22153 0.96816 0.94941 0.83110 0.90639 1.21921 0.87781 0.94294 0.93171 1.44658 1.04351 1.10430 1.74719 1.19424 0.83780 0.97848 1.34874 0.89711 1.25566 1.02068 0.96152 1.02019 1.70122 1.34871 1.03420 1.51366 0.85162 0.80356 0.77451 0.76902 1.21360 1.22814 1.19156 1.21652 0.89397 0.89581 0.98017 1.21823 0.95331 0.92199 0.98043 1.21695 1.01031 1.02053 0.93685 1.21693 0.97385 1.01554 0.97514 0.91725 0.94764 0.88358 0.92632 0.88479 0.84288 0.83568 0.83809 0.84719 0.87310 0.75489 0.91406 1.00134 0.94925 0.94348 0.95786 0.91381 0.90100 0.94980 0.91927 0.90374 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.81 113.37 1.23 1.86 16 2 O -0.38 -11.66 9.38 -129.99 -1.22 -12.88 16 3 C 0.10 2.78 2.50 29.85 0.07 2.86 16 4 H 0.12 2.45 7.79 -2.39 -0.02 2.44 16 5 C -0.07 -2.00 5.03 29.85 0.15 -1.85 16 6 C -0.09 -2.18 4.97 -19.87 -0.10 -2.28 16 7 C -0.12 -2.44 9.70 22.27 0.22 -2.23 16 8 C -0.12 -2.07 10.05 22.27 0.22 -1.84 16 9 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 10 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 11 C -0.12 -2.97 9.40 22.27 0.21 -2.76 16 12 C 0.48 17.80 7.13 87.66 0.63 18.42 16 13 O -0.58 -26.92 16.20 15.92 0.26 -26.66 16 14 N -0.69 -23.18 4.52 -435.95 -1.97 -25.15 16 15 C 0.14 5.24 2.61 46.38 0.12 5.36 16 16 H 0.08 3.07 7.53 -2.39 -0.02 3.05 16 17 C 0.15 7.94 5.27 86.85 0.46 8.39 16 18 N -0.62 -30.67 3.39 -691.99 -2.35 -33.02 16 19 C -0.23 -12.67 10.27 84.04 0.86 -11.80 16 20 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 21 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 22 N -0.95 -58.99 10.09 21.65 0.22 -58.77 16 23 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 25 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C 0.14 5.19 6.41 86.73 0.56 5.75 16 28 C -0.07 -2.22 0.80 -50.99 -0.04 -2.26 16 29 C -0.13 -3.59 8.41 71.98 0.61 -2.99 16 30 C -0.12 -2.60 8.07 71.98 0.58 -2.02 16 31 H 0.06 1.13 8.09 -2.38 -0.02 1.11 16 32 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 35 H 0.10 2.71 7.71 -2.39 -0.02 2.69 16 36 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 38 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.11 2.98 8.06 -2.91 -0.02 2.95 16 41 H 0.41 11.40 6.73 -92.71 -0.62 10.77 16 42 H 0.07 4.14 5.87 -2.39 -0.01 4.13 16 43 H -0.02 -1.10 7.81 -2.39 -0.02 -1.11 16 44 H 0.24 14.89 8.31 -92.71 -0.77 14.12 16 45 H 0.04 1.33 7.76 -2.39 -0.02 1.31 16 46 H 0.02 0.91 7.85 -2.38 -0.02 0.89 16 47 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 48 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.03 1.10 7.58 -2.39 -0.02 1.08 16 50 H 0.06 1.20 6.42 -2.39 -0.02 1.18 16 51 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 52 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -77.54 415.98 3.92 -73.62 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.27 Total: 29.28 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 6.68 Total: 5.01 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -4.10 Total: -116.94 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.96 Total: -39.54 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -77.54 3.92 -73.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734154300.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.529 kcal (2) G-P(sol) polarization free energy of solvation -77.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds