Wall clock time and date at job start Wed Apr 1 2020 05:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 113.99920 * 2 1 4 4 C 1.53008 * 109.46788 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.46744 * 299.99812 * 3 2 1 6 6 O 1.21283 * 119.99966 * 144.03467 * 5 3 2 7 7 N 1.34777 * 120.00353 * 324.03350 * 5 3 2 8 8 C 1.46497 * 119.99768 * 179.97438 * 7 5 3 9 9 C 1.53008 * 109.46923 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.49617 * 305.00100 * 9 8 7 11 11 C 1.53038 * 109.49896 * 184.93377 * 9 8 7 12 12 C 1.53036 * 109.53832 * 178.68549 * 11 9 8 13 13 C 1.53191 * 109.31323 * 61.36659 * 12 11 9 14 14 N 1.46933 * 108.77523 * 305.36455 * 13 12 11 15 15 C 1.36932 * 120.62811 * 233.60580 * 14 13 12 16 16 H 1.08003 * 119.99870 * 151.03949 * 15 14 13 17 17 C 1.38808 * 120.00862 * 331.04743 * 15 14 13 18 18 N 1.31623 * 119.99395 * 347.78006 * 17 15 14 19 19 Si 1.86797 * 120.00594 * 167.78295 * 17 15 14 20 20 H 1.48502 * 109.47053 * 89.99637 * 19 17 15 21 21 H 1.48497 * 109.47129 * 210.00008 * 19 17 15 22 22 H 1.48501 * 109.47017 * 329.99970 * 19 17 15 23 23 C 1.46924 * 118.76347 * 53.58682 * 14 13 12 24 24 C 1.50692 * 109.47092 * 60.00125 * 3 2 1 25 25 C 1.38239 * 119.99910 * 279.86000 * 24 3 2 26 26 C 1.38231 * 119.99757 * 179.79192 * 25 24 3 27 27 C 1.38236 * 120.00046 * 0.46501 * 26 25 24 28 28 C 1.38231 * 120.00205 * 359.76611 * 27 26 25 29 29 C 1.38234 * 119.99938 * 100.14083 * 24 3 2 30 30 H 1.08997 * 109.47252 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47445 * 60.00053 * 1 2 3 32 32 H 1.09004 * 109.46873 * 300.00210 * 1 2 3 33 33 H 1.08999 * 109.47101 * 60.00058 * 4 3 2 34 34 H 1.09005 * 109.46642 * 179.97438 * 4 3 2 35 35 H 1.09001 * 109.46608 * 299.99658 * 4 3 2 36 36 H 0.96996 * 119.99744 * 359.97438 * 7 5 3 37 37 H 1.09002 * 109.47481 * 299.99611 * 8 7 5 38 38 H 1.08994 * 109.47454 * 60.00431 * 8 7 5 39 39 H 1.08996 * 109.46107 * 298.71067 * 11 9 8 40 40 H 1.08998 * 109.45745 * 58.67643 * 11 9 8 41 41 H 1.08994 * 109.50036 * 181.31976 * 12 11 9 42 42 H 1.09003 * 109.49777 * 301.41897 * 12 11 9 43 43 H 1.09000 * 109.58513 * 65.15396 * 13 12 11 44 44 H 1.08999 * 109.58867 * 185.57914 * 13 12 11 45 45 H 0.97003 * 119.99829 * 180.02562 * 18 17 15 46 46 H 1.09000 * 109.61940 * 186.63847 * 23 14 13 47 47 H 1.09011 * 109.56479 * 66.21471 * 23 14 13 48 48 H 1.07994 * 119.99889 * 359.97438 * 25 24 3 49 49 H 1.08000 * 120.00095 * 180.25163 * 26 25 24 50 50 H 1.08002 * 119.99850 * 179.78870 * 27 26 25 51 51 H 1.07995 * 120.00558 * 179.97438 * 28 27 26 52 52 H 1.07995 * 120.00037 * 359.97438 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5655 2.0533 -1.2305 6 8 1.3539 3.2461 -1.1719 7 7 1.4029 1.3966 -2.3962 8 6 0.9701 2.1235 -3.5922 9 6 0.8651 1.1519 -4.7695 10 1 1.8142 0.6313 -4.8972 11 6 0.5330 1.9291 -6.0453 12 6 0.4601 0.9622 -7.2293 13 6 -0.6544 -0.0592 -6.9815 14 7 -0.4201 -0.7095 -5.6849 15 6 -0.3663 -2.0743 -5.5886 16 1 0.2340 -2.5382 -4.8199 17 6 -1.0832 -2.8619 -6.4789 18 7 -1.9951 -2.3148 -7.2545 19 14 -0.7538 -4.6980 -6.5763 20 1 -1.6380 -5.4109 -5.6196 21 1 -1.0274 -5.1775 -7.9549 22 1 0.6657 -4.9652 -6.2318 23 6 -0.2442 0.1321 -4.4934 24 6 1.5656 2.0533 1.2304 25 6 0.3186 2.6491 1.2642 26 6 -0.0909 3.3314 2.3945 27 6 0.7502 3.4261 3.4874 28 6 1.9990 2.8344 3.4518 29 6 2.4069 2.1485 2.3231 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 3.8567 0.6439 -0.8909 34 1 3.9788 2.1805 -0.0011 35 1 3.8574 0.6436 0.8892 36 1 1.5725 0.4427 -2.4432 37 1 -0.0032 2.5787 -3.4085 38 1 1.6964 2.9014 -3.8274 39 1 -0.4277 2.4299 -5.9257 40 1 1.3090 2.6718 -6.2304 41 1 0.2467 1.5194 -8.1414 42 1 1.4127 0.4429 -7.3341 43 1 -1.6187 0.4487 -6.9667 44 1 -0.6458 -0.8086 -7.7729 45 1 -2.4964 -2.8651 -7.8764 46 1 0.0351 -0.4907 -3.6435 47 1 -1.1754 0.6552 -4.2753 48 1 -0.3367 2.5790 0.4087 49 1 -1.0667 3.7934 2.4225 50 1 0.4315 3.9621 4.3692 51 1 2.6563 2.9088 4.3055 52 1 3.3827 1.6865 2.2951 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266079110.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:16 Heat of formation + Delta-G solvation = -34.596479 kcal Electronic energy + Delta-G solvation = -31685.774581 eV Core-core repulsion = 27650.853496 eV Total energy + Delta-G solvation = -4034.921085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.08812 -38.95595 -37.87021 -37.38076 -34.87553 -33.16450 -32.99456 -31.15236 -30.52812 -30.41463 -29.59095 -26.50205 -26.02168 -25.30869 -24.46045 -22.63640 -22.20940 -21.72954 -20.86867 -20.01280 -19.10412 -17.90959 -17.55530 -16.73537 -16.38096 -15.76403 -15.61802 -15.12044 -14.88485 -14.73179 -14.59351 -14.47325 -14.09734 -13.82764 -13.67187 -13.45397 -13.20475 -12.85348 -12.80958 -12.69074 -12.59841 -12.34192 -12.20287 -12.17757 -12.04052 -11.92695 -11.32781 -11.23190 -11.12005 -10.99122 -10.73194 -10.51958 -10.41931 -10.24503 -10.19369 -9.93587 -9.68083 -9.45207 -9.38275 -9.05084 -9.03019 -8.90945 -8.49452 -6.67315 -5.79840 -3.26154 1.09324 1.25013 2.50132 3.07554 3.35332 3.42354 3.43978 3.47264 3.74096 4.27642 4.45503 4.51178 4.74237 4.81342 4.88667 4.93670 5.07656 5.24163 5.26876 5.28092 5.30700 5.35920 5.41789 5.43709 5.45379 5.46383 5.60160 5.70172 5.74640 5.80059 5.82288 5.84883 5.91443 5.97733 6.20730 6.25475 6.30573 6.32883 6.35758 6.36961 6.46639 6.57319 6.68051 6.73696 6.78697 6.79662 6.84834 6.93593 7.40856 7.54739 7.69563 7.77031 8.17647 8.44249 9.19816 9.82091 10.38793 11.27724 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.002700 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.082283 B =10369.572040 C =11231.982659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.360 6.360 3 C 0.142 3.858 4 C -0.139 4.139 5 C 0.492 3.508 6 O -0.532 6.532 7 N -0.713 5.713 8 C 0.126 3.874 9 C -0.118 4.118 10 H 0.073 0.927 11 C -0.099 4.099 12 C -0.142 4.142 13 C 0.168 3.832 14 N -0.591 5.591 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.905 5.905 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.155 3.845 24 C -0.101 4.101 25 C -0.081 4.081 26 C -0.125 4.125 27 C -0.113 4.113 28 C -0.128 4.128 29 C -0.099 4.099 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.408 0.592 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.016 0.984 44 H 0.092 0.908 45 H 0.254 0.746 46 H 0.050 0.950 47 H 0.017 0.983 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.121 0.879 51 H 0.123 0.877 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.254 9.928 17.066 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.279 6.279 3 C 0.099 3.901 4 C -0.196 4.196 5 C 0.277 3.723 6 O -0.409 6.409 7 N -0.365 5.365 8 C 0.002 3.998 9 C -0.138 4.138 10 H 0.092 0.908 11 C -0.137 4.137 12 C -0.181 4.181 13 C 0.042 3.958 14 N -0.314 5.314 15 C -0.381 4.381 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.550 5.550 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.028 3.972 24 C -0.102 4.102 25 C -0.099 4.099 26 C -0.143 4.143 27 C -0.131 4.131 28 C -0.146 4.146 29 C -0.117 4.117 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.244 0.756 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.034 0.966 44 H 0.110 0.890 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.035 0.965 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.139 0.861 51 H 0.141 0.859 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.087 10.504 16.947 21.516 hybrid contribution -0.135 -1.121 -0.202 1.147 sum 7.952 9.383 16.746 20.777 Atomic orbital electron populations 1.23114 0.80322 1.03934 1.00972 1.88054 1.20610 1.24597 1.94614 1.20550 0.96112 0.83399 0.90041 1.21839 0.89932 1.03521 1.04283 1.21000 0.77970 0.88163 0.85210 1.90720 1.50104 1.14789 1.85282 1.46143 1.67838 1.13291 1.09271 1.21505 0.99790 0.94746 0.83771 1.21962 1.01738 0.96810 0.93340 0.90833 1.21338 1.00406 0.97234 0.94757 1.22185 1.01874 0.98157 0.95927 1.20860 0.92006 0.93453 0.89477 1.44021 1.83982 1.01927 1.01438 1.19169 1.21969 0.81263 1.15698 0.91766 1.25096 0.96093 0.97998 1.00452 1.69988 1.23922 1.34618 1.26438 0.86276 0.77992 0.85337 0.77034 1.21377 1.21591 1.20463 1.20891 0.93834 0.91680 0.90803 1.19802 0.95399 0.99828 0.95168 1.21091 0.95533 0.95558 0.97744 1.21127 1.00039 0.99653 0.93497 1.21185 0.94321 0.99259 0.98371 1.21105 0.96623 0.98733 0.98118 1.21086 0.99461 0.98465 0.92660 0.88494 0.93121 0.93082 0.90671 0.90157 0.90079 0.75552 0.91621 0.91901 0.92540 0.93499 0.93214 0.92787 0.96569 0.89031 0.93616 0.93145 0.96520 0.86196 0.85953 0.86105 0.85936 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.60 101.05 0.97 1.12 16 2 O -0.36 -4.46 9.70 -35.23 -0.34 -4.80 16 3 C 0.14 1.70 0.99 -92.92 -0.09 1.61 16 4 C -0.14 -1.34 7.80 37.16 0.29 -1.05 16 5 C 0.49 6.91 4.82 -10.98 -0.05 6.86 16 6 O -0.53 -8.96 14.94 5.56 0.08 -8.87 16 7 N -0.71 -9.69 4.53 -60.29 -0.27 -9.97 16 8 C 0.13 1.81 5.07 -4.04 -0.02 1.79 16 9 C -0.12 -1.91 2.37 -90.49 -0.21 -2.13 16 10 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 11 C -0.10 -1.61 5.17 -26.69 -0.14 -1.75 16 12 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 13 C 0.17 3.93 5.28 -3.71 -0.02 3.91 16 14 N -0.59 -14.33 3.00 -172.31 -0.52 -14.85 16 15 C -0.25 -6.70 9.60 -15.06 -0.14 -6.84 16 16 H 0.06 1.67 7.86 -52.48 -0.41 1.26 16 17 C 0.00 0.05 5.03 -17.43 -0.09 -0.04 16 18 N -0.90 -25.86 10.96 55.49 0.61 -25.25 16 19 Si 0.90 21.33 29.57 -169.99 -5.03 16.30 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.15 3.06 5.60 -3.71 -0.02 3.04 16 24 C -0.10 -1.22 4.32 -104.63 -0.45 -1.67 16 25 C -0.08 -1.00 6.25 -39.58 -0.25 -1.25 16 26 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 27 C -0.11 -1.05 10.05 -39.58 -0.40 -1.45 16 28 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 29 C -0.10 -1.01 9.12 -39.58 -0.36 -1.37 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.63 6.66 -51.93 -0.35 0.29 16 32 H 0.05 0.57 5.69 -51.93 -0.30 0.27 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.65 6.69 -51.93 -0.35 0.30 16 36 H 0.41 5.38 7.16 -40.82 -0.29 5.09 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 2.42 5.96 -51.93 -0.31 2.11 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.05 0.96 7.14 -51.93 -0.37 0.59 16 47 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 48 H 0.12 1.58 6.43 -52.49 -0.34 1.24 16 49 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 50 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 51 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 52 H 0.13 1.04 5.98 -52.49 -0.31 0.72 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -31.04 401.03 -9.87 -40.91 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -8.50 Total: 5.79 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -1.95 Total: -5.31 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.18 Total: -50.06 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.26 Total: -13.68 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.04 -9.87 -40.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266079110.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.315 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds