Wall clock time and date at job start Wed Apr 1 2020 05:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 113.99920 * 2 1 4 4 C 1.53008 * 109.46788 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.46744 * 299.99812 * 3 2 1 6 6 O 1.21283 * 119.99966 * 144.03467 * 5 3 2 7 7 N 1.34777 * 120.00353 * 324.03350 * 5 3 2 8 8 C 1.46497 * 119.99768 * 179.97438 * 7 5 3 9 9 C 1.53008 * 109.46923 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.49617 * 305.00100 * 9 8 7 11 11 C 1.53038 * 109.49896 * 184.93377 * 9 8 7 12 12 C 1.53036 * 109.53832 * 178.68549 * 11 9 8 13 13 C 1.53191 * 109.31323 * 61.36659 * 12 11 9 14 14 N 1.46933 * 108.77523 * 305.36455 * 13 12 11 15 15 C 1.36932 * 120.62811 * 233.60580 * 14 13 12 16 16 H 1.08003 * 119.99870 * 151.03949 * 15 14 13 17 17 C 1.38808 * 120.00862 * 331.04743 * 15 14 13 18 18 N 1.31623 * 119.99395 * 347.78006 * 17 15 14 19 19 Si 1.86797 * 120.00594 * 167.78295 * 17 15 14 20 20 H 1.48502 * 109.47053 * 89.99637 * 19 17 15 21 21 H 1.48497 * 109.47129 * 210.00008 * 19 17 15 22 22 H 1.48501 * 109.47017 * 329.99970 * 19 17 15 23 23 C 1.46924 * 118.76347 * 53.58682 * 14 13 12 24 24 C 1.50692 * 109.47092 * 60.00125 * 3 2 1 25 25 C 1.38239 * 119.99910 * 279.86000 * 24 3 2 26 26 C 1.38231 * 119.99757 * 179.79192 * 25 24 3 27 27 C 1.38236 * 120.00046 * 0.46501 * 26 25 24 28 28 C 1.38231 * 120.00205 * 359.76611 * 27 26 25 29 29 C 1.38234 * 119.99938 * 100.14083 * 24 3 2 30 30 H 1.08997 * 109.47252 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47445 * 60.00053 * 1 2 3 32 32 H 1.09004 * 109.46873 * 300.00210 * 1 2 3 33 33 H 1.08999 * 109.47101 * 60.00058 * 4 3 2 34 34 H 1.09005 * 109.46642 * 179.97438 * 4 3 2 35 35 H 1.09001 * 109.46608 * 299.99658 * 4 3 2 36 36 H 0.96996 * 119.99744 * 359.97438 * 7 5 3 37 37 H 1.09002 * 109.47481 * 299.99611 * 8 7 5 38 38 H 1.08994 * 109.47454 * 60.00431 * 8 7 5 39 39 H 1.08996 * 109.46107 * 298.71067 * 11 9 8 40 40 H 1.08998 * 109.45745 * 58.67643 * 11 9 8 41 41 H 1.08994 * 109.50036 * 181.31976 * 12 11 9 42 42 H 1.09003 * 109.49777 * 301.41897 * 12 11 9 43 43 H 1.09000 * 109.58513 * 65.15396 * 13 12 11 44 44 H 1.08999 * 109.58867 * 185.57914 * 13 12 11 45 45 H 0.97003 * 119.99829 * 180.02562 * 18 17 15 46 46 H 1.09000 * 109.61940 * 186.63847 * 23 14 13 47 47 H 1.09011 * 109.56479 * 66.21471 * 23 14 13 48 48 H 1.07994 * 119.99889 * 359.97438 * 25 24 3 49 49 H 1.08000 * 120.00095 * 180.25163 * 26 25 24 50 50 H 1.08002 * 119.99850 * 179.78870 * 27 26 25 51 51 H 1.07995 * 120.00558 * 179.97438 * 28 27 26 52 52 H 1.07995 * 120.00037 * 359.97438 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5655 2.0533 -1.2305 6 8 1.3539 3.2461 -1.1719 7 7 1.4029 1.3966 -2.3962 8 6 0.9701 2.1235 -3.5922 9 6 0.8651 1.1519 -4.7695 10 1 1.8142 0.6313 -4.8972 11 6 0.5330 1.9291 -6.0453 12 6 0.4601 0.9622 -7.2293 13 6 -0.6544 -0.0592 -6.9815 14 7 -0.4201 -0.7095 -5.6849 15 6 -0.3663 -2.0743 -5.5886 16 1 0.2340 -2.5382 -4.8199 17 6 -1.0832 -2.8619 -6.4789 18 7 -1.9951 -2.3148 -7.2545 19 14 -0.7538 -4.6980 -6.5763 20 1 -1.6380 -5.4109 -5.6196 21 1 -1.0274 -5.1775 -7.9549 22 1 0.6657 -4.9652 -6.2318 23 6 -0.2442 0.1321 -4.4934 24 6 1.5656 2.0533 1.2304 25 6 0.3186 2.6491 1.2642 26 6 -0.0909 3.3314 2.3945 27 6 0.7502 3.4261 3.4874 28 6 1.9990 2.8344 3.4518 29 6 2.4069 2.1485 2.3231 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 3.8567 0.6439 -0.8909 34 1 3.9788 2.1805 -0.0011 35 1 3.8574 0.6436 0.8892 36 1 1.5725 0.4427 -2.4432 37 1 -0.0032 2.5787 -3.4085 38 1 1.6964 2.9014 -3.8274 39 1 -0.4277 2.4299 -5.9257 40 1 1.3090 2.6718 -6.2304 41 1 0.2467 1.5194 -8.1414 42 1 1.4127 0.4429 -7.3341 43 1 -1.6187 0.4487 -6.9667 44 1 -0.6458 -0.8086 -7.7729 45 1 -2.4964 -2.8651 -7.8764 46 1 0.0351 -0.4907 -3.6435 47 1 -1.1754 0.6552 -4.2753 48 1 -0.3367 2.5790 0.4087 49 1 -1.0667 3.7934 2.4225 50 1 0.4315 3.9621 4.3692 51 1 2.6563 2.9088 4.3055 52 1 3.3827 1.6865 2.2951 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266079110.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:15 Heat of formation + Delta-G solvation = -52.386899 kcal Electronic energy + Delta-G solvation = -31686.546032 eV Core-core repulsion = 27650.853496 eV Total energy + Delta-G solvation = -4035.692535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.06008 -40.01251 -39.23276 -38.40632 -36.31608 -34.66389 -34.01594 -32.30292 -31.95863 -31.90872 -30.44854 -27.52265 -27.28321 -27.10024 -25.47299 -23.86031 -23.42588 -22.91266 -22.19227 -21.15623 -20.54315 -19.01003 -18.62210 -18.36149 -17.35442 -16.87904 -16.76193 -16.57584 -16.23028 -15.79887 -15.70987 -15.51766 -15.34600 -15.14459 -15.02178 -14.63018 -14.51886 -14.17010 -13.98472 -13.78042 -13.71147 -13.61457 -13.42358 -13.29327 -13.03405 -12.84961 -12.82025 -12.75912 -12.51319 -12.27848 -12.11788 -11.97646 -11.90660 -11.83165 -11.58960 -11.39154 -11.27562 -11.11178 -10.53796 -10.47866 -10.13010 -9.81687 -9.76731 -8.65380 -7.85184 -5.34363 0.31302 0.48052 1.41201 1.47346 1.48518 1.57841 2.03595 2.51120 2.57911 2.93501 3.30077 3.41673 3.53953 3.61482 3.88043 3.96898 3.98620 4.05141 4.08677 4.13402 4.24753 4.33517 4.37843 4.39954 4.54381 4.54569 4.58894 4.60395 4.69421 4.71717 4.73713 4.79224 4.86180 4.87769 4.99300 5.01157 5.08878 5.09118 5.11887 5.20994 5.31299 5.35467 5.43760 5.51654 5.57458 5.58327 5.58656 5.66866 5.80951 5.82021 6.06239 6.40602 6.45143 7.07402 7.16251 7.86610 8.38390 9.20240 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.002700 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.082283 B =10369.572040 C =11231.982659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.364 6.364 3 C 0.143 3.857 4 C -0.138 4.138 5 C 0.494 3.506 6 O -0.562 6.562 7 N -0.710 5.710 8 C 0.137 3.863 9 C -0.101 4.101 10 H 0.075 0.925 11 C -0.096 4.096 12 C -0.131 4.131 13 C 0.171 3.829 14 N -0.609 5.609 15 C -0.258 4.258 16 H 0.069 0.931 17 C -0.053 4.053 18 N -0.938 5.938 19 Si 0.968 3.032 20 H -0.285 1.285 21 H -0.295 1.295 22 H -0.268 1.268 23 C 0.155 3.845 24 C -0.120 4.120 25 C -0.103 4.103 26 C -0.138 4.138 27 C -0.114 4.114 28 C -0.127 4.127 29 C -0.105 4.105 30 H 0.106 0.894 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.411 0.589 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.052 0.948 43 H -0.009 1.009 44 H 0.057 0.943 45 H 0.249 0.751 46 H 0.054 0.946 47 H 0.005 0.995 48 H 0.100 0.900 49 H 0.133 0.867 50 H 0.148 0.852 51 H 0.153 0.847 52 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.509 10.418 19.073 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.283 6.283 3 C 0.100 3.900 4 C -0.195 4.195 5 C 0.280 3.720 6 O -0.441 6.441 7 N -0.362 5.362 8 C 0.013 3.987 9 C -0.121 4.121 10 H 0.094 0.906 11 C -0.134 4.134 12 C -0.170 4.170 13 C 0.046 3.954 14 N -0.332 5.332 15 C -0.389 4.389 16 H 0.087 0.913 17 C -0.248 4.248 18 N -0.585 5.585 19 Si 0.796 3.204 20 H -0.212 1.212 21 H -0.221 1.221 22 H -0.193 1.193 23 C 0.030 3.970 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.156 4.156 27 C -0.132 4.132 28 C -0.145 4.145 29 C -0.123 4.123 30 H 0.124 0.876 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.248 0.752 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.009 0.991 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.023 0.977 48 H 0.118 0.882 49 H 0.151 0.849 50 H 0.165 0.835 51 H 0.170 0.830 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.364 10.999 18.974 24.257 hybrid contribution -0.885 -1.224 -0.757 1.690 sum 9.478 9.776 18.216 22.743 Atomic orbital electron populations 1.23111 0.80296 1.04327 1.00476 1.88040 1.20702 1.25023 1.94547 1.20629 0.97429 0.82889 0.89048 1.21907 0.88003 1.04156 1.05442 1.21415 0.77060 0.87874 0.85690 1.90698 1.51439 1.16207 1.85754 1.46110 1.67609 1.13346 1.09145 1.21314 0.99750 0.94328 0.83335 1.21724 1.00002 0.96097 0.94276 0.90621 1.21330 1.01561 0.97152 0.93386 1.22009 0.99502 0.97445 0.98004 1.20682 0.92829 0.93450 0.88459 1.44280 1.84136 1.01867 1.02942 1.19526 1.21311 0.82686 1.15334 0.91322 1.25850 0.96257 1.02039 1.00632 1.70163 1.25162 1.35823 1.27307 0.85270 0.78212 0.80472 0.76475 1.21226 1.22111 1.19277 1.20983 0.94620 0.91974 0.89457 1.19915 0.95753 1.00598 0.95815 1.21073 0.95935 0.97214 0.97952 1.21363 1.01013 0.99631 0.93562 1.21548 0.94174 0.98835 0.98652 1.21516 0.96881 0.97503 0.98604 1.21393 1.00034 0.98493 0.92345 0.87580 0.94517 0.92771 0.90383 0.89740 0.88111 0.75228 0.92515 0.90761 0.92704 0.90182 0.91280 0.92891 0.99067 0.92470 0.94213 0.92799 0.97740 0.88230 0.84895 0.83454 0.82959 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 9.60 113.37 1.09 1.42 16 2 O -0.36 -8.75 9.70 -148.98 -1.45 -10.20 16 3 C 0.14 3.30 0.99 -12.29 -0.01 3.29 16 4 C -0.14 -2.40 7.80 71.98 0.56 -1.84 16 5 C 0.49 13.68 4.82 87.66 0.42 14.10 16 6 O -0.56 -18.92 14.94 -3.04 -0.05 -18.97 16 7 N -0.71 -18.83 4.53 -463.05 -2.10 -20.93 16 8 C 0.14 3.79 5.07 86.38 0.44 4.23 16 9 C -0.10 -3.14 2.37 -10.71 -0.03 -3.17 16 10 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 11 C -0.10 -2.96 5.17 30.62 0.16 -2.80 16 12 C -0.13 -4.76 6.08 30.67 0.19 -4.57 16 13 C 0.17 8.25 5.28 86.36 0.46 8.71 16 14 N -0.61 -30.00 3.00 -699.07 -2.09 -32.10 16 15 C -0.26 -13.93 9.60 84.03 0.81 -13.12 16 16 H 0.07 3.56 7.86 -2.91 -0.02 3.54 16 17 C -0.05 -2.93 5.03 84.86 0.43 -2.50 16 18 N -0.94 -55.37 10.96 21.65 0.24 -55.13 16 19 Si 0.97 44.42 29.57 68.60 2.03 46.45 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 C 0.16 6.17 5.60 86.36 0.48 6.66 16 24 C -0.12 -2.78 4.32 -19.87 -0.09 -2.86 16 25 C -0.10 -2.56 6.25 22.27 0.14 -2.42 16 26 C -0.14 -2.81 10.05 22.27 0.22 -2.58 16 27 C -0.11 -1.86 10.05 22.27 0.22 -1.63 16 28 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 29 C -0.10 -1.90 9.12 22.27 0.20 -1.70 16 30 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.04 0.95 6.66 -2.39 -0.02 0.93 16 32 H 0.05 1.23 5.69 -2.39 -0.01 1.22 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.10 1.33 6.69 -2.39 -0.02 1.32 16 36 H 0.41 10.52 7.16 -92.71 -0.66 9.86 16 37 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 44 H 0.06 3.14 5.96 -2.39 -0.01 3.12 16 45 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 46 H 0.05 2.06 7.14 -2.39 -0.02 2.05 16 47 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 48 H 0.10 2.77 6.43 -2.91 -0.02 2.75 16 49 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 50 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 51 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 52 H 0.15 1.94 5.98 -2.91 -0.02 1.93 16 Total: -1.00 -68.62 401.03 2.75 -65.87 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.25 Total: 27.54 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 5.92 Total: -2.53 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -3.95 Total: -108.16 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -1.49 Total: -29.17 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -68.62 2.75 -65.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266079110.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.481 kcal (2) G-P(sol) polarization free energy of solvation -68.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds