Wall clock time and date at job start Wed Apr 1 2020 05:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47334 * 2 1 4 4 C 1.38289 * 119.97263 * 90.00025 * 3 2 1 5 5 C 1.38249 * 120.10949 * 180.02562 * 4 3 2 6 6 C 1.38161 * 120.05889 * 359.97438 * 5 4 3 7 7 C 1.38710 * 119.94288 * 359.97438 * 6 5 4 8 8 O 1.35897 * 120.05637 * 180.02562 * 7 6 5 9 9 C 1.42905 * 117.00093 * 0.02562 * 8 7 6 10 10 C 1.50703 * 109.47264 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99926 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99642 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46995 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 H 1.08995 * 110.89071 * 54.29635 * 15 14 13 17 17 C 1.55157 * 111.00379 * 178.17812 * 15 14 13 18 18 C 1.54329 * 102.94288 * 153.57660 * 17 15 14 19 19 N 1.47026 * 107.26776 * 337.80438 * 18 17 15 20 20 C 1.36936 * 125.64739 * 178.97547 * 19 18 17 21 21 H 1.08000 * 120.00400 * 179.97438 * 20 19 18 22 22 C 1.38822 * 119.99662 * 359.97438 * 20 19 18 23 23 N 1.31614 * 120.00137 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99812 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47154 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47474 * 119.99711 * 24 22 20 27 27 H 1.48504 * 109.47212 * 240.00356 * 24 22 20 28 28 C 1.47462 * 108.72498 * 358.97823 * 19 18 17 29 29 C 1.38127 * 119.97359 * 270.25463 * 3 2 1 30 30 H 1.08997 * 109.46733 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47018 * 299.99804 * 1 2 3 32 32 H 1.09001 * 109.47278 * 60.00190 * 1 2 3 33 33 H 1.09001 * 109.47670 * 239.99865 * 2 1 3 34 34 H 1.09001 * 109.47278 * 119.99809 * 2 1 3 35 35 H 1.08002 * 119.94669 * 359.97438 * 4 3 2 36 36 H 1.08003 * 119.96802 * 179.97438 * 5 4 3 37 37 H 1.07994 * 120.03054 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.47103 * 300.00408 * 9 8 7 39 39 H 1.09004 * 109.47054 * 59.99912 * 9 8 7 40 40 H 0.96998 * 120.00166 * 0.02562 * 12 10 9 41 41 H 1.08998 * 109.47245 * 299.99628 * 13 12 10 42 42 H 1.08996 * 109.47815 * 60.00326 * 13 12 10 43 43 H 1.09001 * 109.47002 * 299.99701 * 14 13 12 44 44 H 1.08996 * 109.47451 * 60.00130 * 14 13 12 45 45 H 1.08997 * 110.71848 * 271.93658 * 17 15 14 46 46 H 1.08998 * 110.72166 * 35.03576 * 17 15 14 47 47 H 1.08998 * 109.88533 * 97.22042 * 18 17 15 48 48 H 1.08997 * 109.88445 * 218.23903 * 18 17 15 49 49 H 0.97002 * 120.00134 * 180.02562 * 23 22 20 50 50 H 1.08996 * 110.34977 * 265.25249 * 28 19 18 51 51 H 1.09007 * 110.40637 * 142.91393 * 28 19 18 52 52 H 1.08001 * 120.02571 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0721 1.1979 5 6 2.7230 3.3757 1.2013 6 6 2.9547 4.0308 0.0071 7 6 2.7255 3.3794 -1.1958 8 8 2.9530 4.0214 -2.3718 9 6 3.4287 5.3668 -2.2949 10 6 3.6226 5.9113 -3.6867 11 8 3.3771 5.2160 -4.6496 12 7 4.0678 7.1714 -3.8613 13 6 4.2557 7.7009 -5.2142 14 6 4.7651 9.1413 -5.1320 15 6 4.9608 9.6945 -6.5449 16 1 4.0479 9.5934 -7.1318 17 6 5.4343 11.1715 -6.5032 18 6 6.2037 11.3255 -7.8321 19 7 6.6108 9.9788 -8.2593 20 6 7.2998 9.6789 -9.4041 21 1 7.5530 8.6534 -9.6290 22 6 7.6728 10.6931 -10.2755 23 7 7.3647 11.9429 -10.0011 24 14 8.6121 10.2840 -11.8374 25 1 8.8325 8.8173 -11.9127 26 1 7.8273 10.7272 -13.0175 27 1 9.9229 10.9819 -11.8240 28 6 6.1543 9.0042 -7.2512 29 6 2.2574 2.0732 -1.1965 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0818 1.5619 2.1325 36 1 2.9018 3.8824 2.1382 37 1 3.3139 5.0493 0.0102 38 1 2.7012 5.9795 -1.7626 39 1 4.3793 5.3861 -1.7619 40 1 4.2638 7.7276 -3.0912 41 1 4.9836 7.0883 -5.7463 42 1 3.3053 7.6812 -5.7475 43 1 4.0376 9.7541 -4.5998 44 1 5.7157 9.1606 -4.5990 45 1 4.5812 11.8492 -6.4708 46 1 6.0927 11.3415 -5.6513 47 1 5.5561 11.7735 -8.5857 48 1 7.0837 11.9505 -7.6807 49 1 7.6250 12.6516 -10.6102 50 1 6.9504 8.7976 -6.5360 51 1 5.8281 8.0828 -7.7338 52 1 2.0731 1.5656 -2.1318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732060607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:28 Heat of formation + Delta-G solvation = -39.595044 kcal Electronic energy + Delta-G solvation = -28614.790833 eV Core-core repulsion = 24579.652994 eV Total energy + Delta-G solvation = -4035.137839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.77693 -39.68870 -38.10451 -37.68518 -35.29386 -34.23681 -33.08288 -31.40792 -30.79089 -29.56598 -29.21189 -28.39212 -26.36184 -24.70341 -24.27448 -22.90486 -22.42707 -21.47544 -20.67242 -19.99352 -19.47746 -18.37052 -17.42176 -16.86368 -16.75945 -16.51593 -16.14103 -15.63724 -15.50646 -15.00105 -14.80667 -14.54658 -14.40027 -13.98548 -13.82277 -13.77523 -13.59808 -13.45658 -13.07975 -12.56771 -12.47692 -12.30850 -12.20977 -11.98069 -11.84453 -11.83543 -11.56381 -11.42892 -11.37388 -11.13895 -11.11512 -10.85457 -10.77096 -10.16736 -10.11591 -9.95563 -9.83864 -9.75381 -9.60364 -9.23600 -9.20795 -8.57940 -8.57402 -6.79259 -5.68320 -3.01272 0.90990 1.06293 2.25044 2.34784 3.34980 3.36267 3.41928 3.47729 3.50073 4.25239 4.30041 4.46604 4.51369 4.53036 4.62235 4.63789 4.70914 4.87476 4.88216 4.93478 5.03521 5.06748 5.15421 5.22136 5.25997 5.48423 5.49656 5.51747 5.59419 5.64441 5.66251 5.74107 5.78226 5.85213 5.90487 6.00033 6.02368 6.07515 6.18684 6.20814 6.27957 6.36297 6.39124 6.55742 6.60072 6.74208 6.97074 6.98039 7.24496 7.60164 7.65814 7.86050 7.96716 8.29565 9.25923 9.86366 10.52565 11.43600 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.024879 B = 0.001396 C = 0.001348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.192529 B =20052.835650 C =20765.680796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.043 4.043 4 C -0.158 4.158 5 C -0.077 4.077 6 C -0.217 4.217 7 C 0.134 3.866 8 O -0.289 6.289 9 C 0.042 3.958 10 C 0.512 3.488 11 O -0.514 6.514 12 N -0.725 5.725 13 C 0.119 3.881 14 C -0.116 4.116 15 C -0.101 4.101 16 H 0.076 0.924 17 C -0.138 4.138 18 C 0.177 3.823 19 N -0.607 5.607 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.923 5.923 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.139 3.861 29 C -0.147 4.147 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.400 0.600 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.045 0.955 48 H 0.041 0.959 49 H 0.251 0.749 50 H 0.017 0.983 51 H 0.037 0.963 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.658 -16.336 27.465 34.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.043 4.043 4 C -0.176 4.176 5 C -0.095 4.095 6 C -0.235 4.235 7 C 0.088 3.912 8 O -0.201 6.201 9 C -0.037 4.037 10 C 0.295 3.705 11 O -0.389 6.389 12 N -0.378 5.378 13 C -0.004 4.004 14 C -0.154 4.154 15 C -0.121 4.121 16 H 0.095 0.905 17 C -0.176 4.176 18 C 0.052 3.948 19 N -0.333 5.333 20 C -0.355 4.355 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.571 5.571 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.013 3.987 29 C -0.166 4.166 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.234 0.766 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.035 0.965 51 H 0.056 0.944 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.768 -16.814 26.336 33.754 hybrid contribution 0.746 0.501 -0.265 0.937 sum -12.022 -16.312 26.071 33.020 Atomic orbital electron populations 1.21749 0.94412 1.01909 1.02404 1.20579 0.96417 0.92174 1.03201 1.19706 0.96422 0.95990 0.92173 1.20947 1.03712 0.95370 0.97562 1.20920 0.96695 0.94482 0.97368 1.21249 1.08749 1.01287 0.92248 1.19037 0.95424 0.92326 0.84384 1.86173 1.80580 1.25654 1.27679 1.22489 1.01296 0.83360 0.96571 1.19975 0.78058 0.82194 0.90226 1.90784 1.48669 1.57614 1.41802 1.45905 1.68056 1.13632 1.10250 1.21552 1.01896 0.94948 0.81984 1.21748 1.01327 0.93707 0.98607 1.22278 0.99539 0.96592 0.93703 0.90543 1.22897 0.99573 0.94720 1.00435 1.21129 0.96487 0.87164 0.90021 1.44503 1.65491 1.01719 1.21609 1.19136 1.27301 0.93217 0.95828 0.90410 1.24798 1.01323 0.95392 0.99071 1.69979 1.51320 0.98515 1.37285 0.86052 0.79229 0.77452 0.83112 1.20493 1.21776 1.21794 1.21623 0.92693 0.93031 0.91331 1.20318 1.04773 0.92612 0.98871 0.92216 0.92505 0.92332 0.90667 0.90728 0.85965 0.85699 0.85450 0.88949 0.88894 0.76568 0.90679 0.91179 0.91584 0.91211 0.92360 0.92587 0.93703 0.94094 0.93885 0.96516 0.94424 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.39 16 2 C -0.09 -0.48 6.06 -27.89 -0.17 -0.65 16 3 C -0.04 -0.33 5.13 -104.64 -0.54 -0.86 16 4 C -0.16 -1.09 9.70 -39.56 -0.38 -1.47 16 5 C -0.08 -0.52 10.04 -39.61 -0.40 -0.92 16 6 C -0.22 -1.66 9.04 -39.44 -0.36 -2.02 16 7 C 0.13 1.33 6.69 -39.22 -0.26 1.06 16 8 O -0.29 -3.35 9.67 -39.32 -0.38 -3.73 16 9 C 0.04 0.35 5.22 36.01 0.19 0.53 16 10 C 0.51 6.01 7.91 -10.98 -0.09 5.92 16 11 O -0.51 -8.74 16.50 -14.35 -0.24 -8.98 16 12 N -0.72 -6.91 5.56 -60.30 -0.33 -7.24 16 13 C 0.12 1.43 5.55 -4.04 -0.02 1.41 16 14 C -0.12 -1.35 4.84 -26.73 -0.13 -1.48 16 15 C -0.10 -1.66 3.04 -88.47 -0.27 -1.92 16 16 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 17 C -0.14 -2.47 6.42 -24.89 -0.16 -2.63 16 18 C 0.18 4.30 5.37 -3.06 -0.02 4.29 16 19 N -0.61 -15.72 3.40 -170.03 -0.58 -16.30 16 20 C -0.23 -6.45 10.28 -15.06 -0.15 -6.60 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 23 N -0.92 -27.49 10.31 55.49 0.57 -26.92 16 24 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 C 0.14 2.86 6.04 -2.51 -0.02 2.84 16 29 C -0.15 -1.38 9.64 -39.43 -0.38 -1.76 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 35 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 36 H 0.13 0.56 8.06 -52.48 -0.42 0.13 16 37 H 0.13 0.69 6.30 -52.49 -0.33 0.35 16 38 H 0.09 0.51 7.66 -51.93 -0.40 0.11 16 39 H 0.09 0.54 7.66 -51.93 -0.40 0.14 16 40 H 0.40 2.36 8.47 -40.82 -0.35 2.01 16 41 H 0.07 1.06 7.59 -51.93 -0.39 0.66 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.79 8.04 -51.93 -0.42 0.37 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 47 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 48 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 49 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.02 0.34 7.96 -51.93 -0.41 -0.07 16 51 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 52 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 420.83 15.07 6.34 6.34 Total: -1.00 -35.56 420.83 -11.44 -47.00 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.92 Total: -2.61 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.88 Total: -5.04 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.34 Total: -50.46 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.62 Total: -12.71 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -35.56 -11.44 -47.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732060607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.400 kcal (2) G-P(sol) polarization free energy of solvation -35.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds