Wall clock time and date at job start Wed Apr 1 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50691 * 109.47089 * 2 1 4 4 C 1.38275 * 119.94781 * 269.73066 * 3 2 1 5 5 C 1.38143 * 120.05586 * 179.72529 * 4 3 2 6 6 C 1.38729 * 119.94376 * 0.57225 * 5 4 3 7 7 O 1.35901 * 120.05477 * 179.68278 * 6 5 4 8 8 C 1.42900 * 116.99853 * 0.02562 * 7 6 5 9 9 C 1.50706 * 109.47038 * 180.02562 * 8 7 6 10 10 O 1.21288 * 119.99608 * 359.97438 * 9 8 7 11 11 N 1.34766 * 120.00001 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99857 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47136 * 175.53848 * 12 11 9 14 14 N 1.46505 * 110.01821 * 55.25692 * 13 12 11 15 15 C 1.36938 * 119.99554 * 61.54849 * 14 13 12 16 16 H 1.07999 * 120.00101 * 354.38048 * 15 14 13 17 17 C 1.38809 * 119.99976 * 174.37252 * 15 14 13 18 18 N 1.31623 * 120.00030 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00317 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.46950 * 90.00209 * 19 17 15 21 21 H 1.48499 * 109.47032 * 210.00634 * 19 17 15 22 22 H 1.48500 * 109.46680 * 330.00003 * 19 17 15 23 23 C 1.54272 * 110.03408 * 293.81814 * 13 12 11 24 24 C 1.54886 * 104.19488 * 217.10522 * 23 13 12 25 25 C 1.54889 * 102.75286 * 37.94125 * 24 23 13 26 26 C 1.53875 * 110.03590 * 176.65042 * 13 12 11 27 27 C 1.38730 * 119.88906 * 359.69875 * 6 5 4 28 28 C 1.38144 * 119.94316 * 0.02562 * 27 6 5 29 29 H 1.08992 * 109.47125 * 59.99771 * 1 2 3 30 30 H 1.08994 * 109.46587 * 299.99250 * 1 2 3 31 31 H 1.09000 * 109.46719 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47457 * 120.00661 * 2 1 3 33 33 H 1.09003 * 109.46751 * 240.00626 * 2 1 3 34 34 H 1.07995 * 119.96556 * 359.97438 * 4 3 2 35 35 H 1.07998 * 120.02857 * 180.24742 * 5 4 3 36 36 H 1.08999 * 109.47157 * 299.99765 * 8 7 6 37 37 H 1.08996 * 109.47711 * 60.00238 * 8 7 6 38 38 H 0.97003 * 120.00255 * 359.97438 * 11 9 8 39 39 H 1.08994 * 109.47265 * 295.53680 * 12 11 9 40 40 H 1.08999 * 109.47551 * 55.54296 * 12 11 9 41 41 H 0.96999 * 120.00154 * 241.54509 * 14 13 12 42 42 H 0.97001 * 120.00432 * 179.97438 * 18 17 15 43 43 H 1.08994 * 110.48224 * 335.78167 * 23 13 12 44 44 H 1.09001 * 110.48456 * 98.42317 * 23 13 12 45 45 H 1.09004 * 110.75905 * 279.62596 * 24 23 13 46 46 H 1.09003 * 110.75594 * 156.25828 * 24 23 13 47 47 H 1.08997 * 110.48530 * 203.38223 * 25 24 23 48 48 H 1.08995 * 110.48577 * 80.73106 * 25 24 23 49 49 H 1.08993 * 110.03401 * 238.57007 * 26 13 12 50 50 H 1.08997 * 110.02783 * 0.02562 * 26 13 12 51 51 H 1.08001 * 120.02628 * 179.97438 * 27 6 5 52 52 H 1.08007 * 119.96891 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2678 2.0697 -1.1981 5 6 2.7228 3.3740 -1.2008 6 6 2.9550 4.0288 0.0000 7 8 3.4088 5.3098 0.0000 8 6 3.6248 5.9216 -1.2732 9 6 4.1244 7.3296 -1.0757 10 8 4.2798 7.7663 0.0451 11 7 4.3986 8.1034 -2.1445 12 6 4.8838 9.4724 -1.9525 13 6 5.2213 10.0891 -3.3114 14 7 4.0585 10.0131 -4.1993 15 6 2.8969 10.6553 -3.8626 16 1 2.8073 11.1412 -2.9023 17 6 1.8345 10.6818 -4.7556 18 7 1.9436 10.0894 -5.9259 19 14 0.2501 11.5584 -4.2967 20 1 0.3259 12.9768 -4.7294 21 1 -0.8953 10.8956 -4.9705 22 1 0.0602 11.4992 -2.8250 23 6 6.4195 9.3512 -3.9437 24 6 7.2255 10.4701 -4.6489 25 6 7.0982 11.6570 -3.6620 26 6 5.6529 11.5552 -3.1323 27 6 2.7234 3.3737 1.2008 28 6 2.2629 2.0713 1.1980 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 0.5137 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 0.8898 33 1 1.8933 -0.5138 -0.8901 34 1 2.0918 1.5576 -2.1326 35 1 2.9027 3.8817 -2.1368 36 1 4.3656 5.3484 -1.8307 37 1 2.6879 5.9429 -1.8298 38 1 4.2747 7.7540 -3.0409 39 1 4.1108 10.0669 -1.4656 40 1 5.7774 9.4571 -1.3285 41 1 4.1116 9.5081 -5.0258 42 1 1.2011 10.1075 -6.5499 43 1 7.0238 8.8740 -3.1723 44 1 6.0741 8.6146 -4.6692 45 1 6.7797 10.7190 -5.6120 46 1 8.2687 10.1777 -4.7690 47 1 7.2481 12.6032 -4.1820 48 1 7.8121 11.5521 -2.8451 49 1 4.9978 12.2101 -3.7067 50 1 5.6223 11.8272 -2.0773 51 1 2.9038 3.8812 2.1369 52 1 2.0828 1.5607 2.1326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753679663.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:04 Heat of formation + Delta-G solvation = -55.020797 kcal Electronic energy + Delta-G solvation = -30109.182682 eV Core-core repulsion = 26073.375933 eV Total energy + Delta-G solvation = -4035.806750 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.43083 -39.40534 -38.33420 -37.50270 -34.16547 -33.74888 -33.36229 -31.26027 -30.79961 -29.55008 -28.44771 -28.33233 -27.18391 -24.39287 -23.76466 -23.28123 -22.77218 -21.03507 -20.53062 -19.89114 -18.67013 -18.37421 -17.28540 -16.83797 -16.31644 -15.93284 -15.75431 -15.63971 -15.05853 -14.64888 -14.51878 -14.38234 -14.16961 -14.01191 -13.66876 -13.57054 -13.35075 -13.22244 -13.13888 -12.70877 -12.61993 -12.49203 -12.21268 -11.84555 -11.59345 -11.39116 -11.21943 -11.06156 -10.93942 -10.91523 -10.85936 -10.72326 -10.61782 -10.53892 -10.40693 -10.10817 -9.89356 -9.70288 -9.51483 -9.14624 -8.97999 -8.55509 -8.17941 -7.07954 -5.86583 -3.16168 1.19783 1.27919 2.71496 2.88957 3.38293 3.45310 3.46472 3.60045 3.90598 4.51875 4.57484 4.59103 4.72262 4.84214 4.95918 5.00391 5.06064 5.10458 5.11317 5.15365 5.19637 5.20384 5.26846 5.36748 5.51467 5.52546 5.61943 5.62695 5.70766 5.72072 5.89002 5.91847 5.94068 5.94380 6.06660 6.11324 6.15117 6.21322 6.23067 6.28658 6.38342 6.46902 6.52866 6.56958 6.62355 6.69536 6.78539 6.90835 7.08146 7.29691 7.67312 7.91570 8.32124 8.54880 9.44046 9.97321 10.33097 11.35194 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.002413 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.723413 B =11598.921620 C =13060.638765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.127 4.127 4 C -0.076 4.076 5 C -0.207 4.207 6 C 0.129 3.871 7 O -0.289 6.289 8 C 0.041 3.959 9 C 0.511 3.489 10 O -0.535 6.535 11 N -0.696 5.696 12 C 0.121 3.879 13 C 0.188 3.812 14 N -0.712 5.712 15 C -0.235 4.235 16 H 0.070 0.930 17 C -0.008 4.008 18 N -0.931 5.931 19 Si 0.901 3.099 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.130 4.130 27 C -0.148 4.148 28 C -0.079 4.079 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.405 0.595 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.083 0.917 50 H 0.051 0.949 51 H 0.131 0.869 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.352 -16.051 7.347 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.127 4.127 4 C -0.095 4.095 5 C -0.226 4.226 6 C 0.084 3.916 7 O -0.201 6.201 8 C -0.038 4.038 9 C 0.295 3.705 10 O -0.412 6.412 11 N -0.348 5.348 12 C -0.005 4.005 13 C 0.096 3.904 14 N -0.354 5.354 15 C -0.366 4.366 16 H 0.088 0.912 17 C -0.204 4.204 18 N -0.579 5.579 19 Si 0.732 3.268 20 H -0.217 1.217 21 H -0.219 1.219 22 H -0.207 1.207 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.159 4.159 26 C -0.170 4.170 27 C -0.166 4.166 28 C -0.097 4.097 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.240 0.760 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.101 0.899 50 H 0.070 0.930 51 H 0.149 0.851 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.354 -15.488 8.365 18.399 hybrid contribution -1.149 0.279 -0.839 1.450 sum 4.205 -15.210 7.525 17.483 Atomic orbital electron populations 1.21770 0.94938 1.01501 1.02330 1.20453 0.96018 0.92569 1.02579 1.19788 1.02944 0.96864 0.93083 1.20812 0.97209 0.93743 0.97689 1.21312 1.07219 0.96861 0.97188 1.19103 0.94463 0.83739 0.94326 1.86159 1.80173 1.24022 1.29745 1.22526 1.02626 0.93157 0.85465 1.19858 0.78729 0.86382 0.85510 1.90709 1.52352 1.74330 1.23761 1.45605 1.66112 1.14427 1.08629 1.21991 0.98268 0.81248 0.99016 1.20465 0.87889 0.92914 0.89148 1.42551 1.08170 1.61216 1.23430 1.19098 0.90555 1.27296 0.99601 0.91226 1.24704 0.98529 1.01069 0.96120 1.69648 1.31978 1.48300 1.07941 0.86284 0.83541 0.79340 0.77637 1.21709 1.21854 1.20739 1.22582 0.96428 0.97695 0.99376 1.22414 0.98728 0.95498 0.99039 1.22310 0.97268 0.98066 0.98211 1.22656 0.95624 0.98418 1.00264 1.20438 1.04702 0.95051 0.96455 1.20807 0.97666 0.93491 0.97727 0.92532 0.92561 0.92586 0.91258 0.91256 0.85858 0.85202 0.89269 0.88787 0.75993 0.91732 0.92495 0.78145 0.93529 0.91789 0.91550 0.91246 0.92594 0.92418 0.92566 0.89872 0.92980 0.85069 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.90 37.16 0.37 -0.65 16 2 C -0.08 -0.57 6.06 -27.88 -0.17 -0.74 16 3 C -0.13 -1.21 5.13 -104.60 -0.54 -1.75 16 4 C -0.08 -0.77 9.69 -39.60 -0.38 -1.16 16 5 C -0.21 -2.38 9.04 -39.44 -0.36 -2.74 16 6 C 0.13 1.73 6.69 -39.22 -0.26 1.47 16 7 O -0.29 -4.50 9.67 -39.34 -0.38 -4.88 16 8 C 0.04 0.56 5.22 36.01 0.19 0.75 16 9 C 0.51 8.83 7.91 -10.99 -0.09 8.74 16 10 O -0.53 -11.33 16.50 -14.36 -0.24 -11.57 16 11 N -0.70 -11.53 5.23 -60.29 -0.32 -11.85 16 12 C 0.12 2.14 4.04 -4.04 -0.02 2.12 16 13 C 0.19 3.28 0.68 -130.69 -0.09 3.19 16 14 N -0.71 -15.34 4.53 -46.19 -0.21 -15.55 16 15 C -0.23 -5.88 8.52 -15.06 -0.13 -6.01 16 16 H 0.07 1.77 7.27 -52.49 -0.38 1.39 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 18 N -0.93 -26.08 13.07 55.49 0.73 -25.35 16 19 Si 0.90 21.72 29.55 -169.99 -5.02 16.69 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.12 -1.80 5.72 -25.07 -0.14 -1.94 16 24 C -0.12 -1.66 6.91 -24.74 -0.17 -1.83 16 25 C -0.12 -1.71 6.83 -25.07 -0.17 -1.88 16 26 C -0.13 -2.20 5.93 -25.61 -0.15 -2.35 16 27 C -0.15 -1.77 9.99 -39.43 -0.39 -2.17 16 28 C -0.08 -0.79 9.69 -39.61 -0.38 -1.17 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.13 1.30 6.30 -52.49 -0.33 0.97 16 36 H 0.09 0.96 7.66 -51.93 -0.40 0.56 16 37 H 0.09 1.18 7.66 -51.93 -0.40 0.78 16 38 H 0.40 6.29 7.99 -40.82 -0.33 5.96 16 39 H 0.06 1.32 7.46 -51.93 -0.39 0.93 16 40 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 41 H 0.38 8.85 7.45 -40.82 -0.30 8.54 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.06 0.86 7.79 -51.93 -0.40 0.46 16 44 H 0.07 0.97 7.72 -51.93 -0.40 0.57 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.08 1.64 7.36 -51.93 -0.38 1.26 16 50 H 0.05 0.84 7.67 -51.93 -0.40 0.44 16 51 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 52 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 419.33 15.07 6.32 6.32 Total: -1.00 -30.77 419.33 -10.84 -41.61 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -8.73 Total: 12.99 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.98 Total: -8.41 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.20 Total: -52.75 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.62 Total: -16.45 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -30.77 -10.84 -41.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753679663.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.410 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds