Wall clock time and date at job start Wed Apr 1 2020 04:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99891 * 2 1 4 4 C 1.53005 * 109.46922 * 270.00104 * 3 2 1 5 5 C 1.52993 * 109.47161 * 299.99978 * 4 3 2 6 6 C 1.52997 * 109.47181 * 59.99935 * 4 3 2 7 7 C 1.53005 * 109.46828 * 179.97438 * 4 3 2 8 8 N 1.46502 * 109.46852 * 180.02562 * 7 4 3 9 9 C 1.36940 * 119.99772 * 180.02562 * 8 7 4 10 10 H 1.07997 * 120.00050 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99560 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00749 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99970 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46769 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47198 * 119.99537 * 13 11 9 16 16 H 1.48500 * 109.47302 * 240.00205 * 13 11 9 17 17 C 1.34776 * 120.00086 * 180.02562 * 2 1 3 18 18 O 1.21287 * 119.99892 * 180.02562 * 17 2 1 19 19 C 1.50700 * 120.00173 * 0.02562 * 17 2 1 20 20 C 1.52998 * 109.47041 * 179.97438 * 19 17 2 21 21 H 1.08995 * 110.66999 * 51.78313 * 20 19 17 22 22 C 1.54707 * 110.74639 * 174.99962 * 20 19 17 23 23 C 1.51645 * 101.92201 * 143.81456 * 22 20 19 24 24 C 1.37741 * 132.17555 * 164.22111 * 23 22 20 25 25 C 1.38353 * 119.97655 * 180.54312 * 24 23 22 26 26 C 1.38283 * 119.76367 * 0.37865 * 25 24 23 27 27 C 1.37932 * 120.35368 * 359.26026 * 26 25 24 28 28 C 1.38884 * 107.03657 * 344.52428 * 23 22 20 29 29 O 1.36141 * 111.23901 * 359.06137 * 28 23 22 30 30 H 1.09000 * 109.46696 * 269.99799 * 1 2 3 31 31 H 1.09001 * 109.47601 * 29.99912 * 1 2 3 32 32 H 1.09004 * 109.47076 * 150.00490 * 1 2 3 33 33 H 1.09003 * 109.47038 * 29.99858 * 3 2 1 34 34 H 1.09000 * 109.47119 * 150.00573 * 3 2 1 35 35 H 1.08997 * 109.47540 * 59.99851 * 5 4 3 36 36 H 1.08998 * 109.47366 * 180.02562 * 5 4 3 37 37 H 1.09009 * 109.47363 * 299.99996 * 5 4 3 38 38 H 1.09003 * 109.47283 * 59.99938 * 6 4 3 39 39 H 1.09000 * 109.47095 * 179.97438 * 6 4 3 40 40 H 1.08997 * 109.47563 * 300.00229 * 6 4 3 41 41 H 1.08996 * 109.46864 * 299.99888 * 7 4 3 42 42 H 1.08997 * 109.46867 * 60.00067 * 7 4 3 43 43 H 0.96997 * 119.99816 * 359.97438 * 8 7 4 44 44 H 0.96998 * 120.00715 * 180.02562 * 12 11 9 45 45 H 1.08994 * 109.46958 * 59.99739 * 19 17 2 46 46 H 1.08996 * 109.46473 * 299.99904 * 19 17 2 47 47 H 1.09000 * 110.93994 * 25.65840 * 22 20 19 48 48 H 1.08997 * 110.93800 * 261.96983 * 22 20 19 49 49 H 1.07995 * 120.01289 * 0.52807 * 24 23 22 50 50 H 1.08002 * 120.11265 * 180.09204 * 25 24 23 51 51 H 1.08007 * 119.82195 * 179.52684 * 26 25 24 52 52 H 1.08000 * 119.87594 * 180.22216 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.2792 0.6442 -2.1638 6 6 1.1155 1.8933 -2.1638 7 6 3.2168 3.0358 -1.4425 8 7 3.4604 3.4590 -2.8238 9 6 4.1335 4.6251 -3.0740 10 1 4.4843 5.2329 -2.2531 11 6 4.3638 5.0263 -4.3827 12 7 3.9358 4.2859 -5.3832 13 14 5.2813 6.6173 -4.7242 14 1 5.6526 7.2603 -3.4381 15 1 6.5103 6.3224 -5.5037 16 1 4.4097 7.5342 -5.5019 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1671 -0.0001 19 6 1.3854 -2.4723 -0.0017 20 6 2.3797 -3.6352 -0.0027 21 1 3.1092 -3.5183 0.7986 22 6 1.6405 -4.9884 0.1222 23 6 2.4817 -5.8878 -0.7628 24 6 2.5583 -7.2579 -0.8823 25 6 3.4416 -7.8248 -1.7837 26 6 4.2503 -7.0116 -2.5563 27 6 4.1700 -5.6393 -2.4435 28 6 3.2801 -5.0605 -1.5418 29 8 3.0362 -3.7476 -1.2768 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8901 -0.5138 33 1 1.6083 2.0284 0.5138 34 1 3.1499 1.1384 0.5137 35 1 2.7344 -0.2998 -2.1638 36 1 3.4613 0.9590 -3.1913 37 1 4.2318 0.5139 -1.6500 38 1 0.5264 2.6530 -1.6500 39 1 1.2972 2.2084 -3.1913 40 1 0.5705 0.9494 -2.1638 41 1 2.6274 3.7952 -0.9289 42 1 4.1692 2.9059 -0.9286 43 1 3.1456 2.9129 -3.5610 44 1 4.0970 4.5660 -6.2977 45 1 0.7591 -2.5294 -0.8919 46 1 0.7585 -2.5306 0.8880 47 1 0.6213 -4.9120 -0.2568 48 1 1.6457 -5.3414 1.1534 49 1 1.9294 -7.8893 -0.2724 50 1 3.5024 -8.8988 -1.8803 51 1 4.9456 -7.4534 -3.2548 52 1 4.8028 -5.0114 -3.0533 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282295556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:08 Heat of formation + Delta-G solvation = -26.880979 kcal Electronic energy + Delta-G solvation = -30901.859669 eV Core-core repulsion = 26867.273153 eV Total energy + Delta-G solvation = -4034.586516 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.43866 -40.08655 -37.78824 -37.13128 -35.06218 -33.52531 -32.98754 -31.54881 -30.22474 -30.13081 -28.06452 -27.57554 -26.48423 -25.71010 -25.01889 -22.93545 -22.49796 -21.91174 -21.83447 -19.34317 -18.30603 -17.82158 -17.25545 -17.15330 -16.83406 -16.35716 -15.83832 -15.66106 -15.13695 -14.50286 -14.40458 -14.13886 -13.92788 -13.64794 -13.55177 -13.39810 -13.34249 -13.21552 -13.03016 -12.73666 -12.62841 -12.48147 -12.39493 -12.06678 -12.05586 -11.98610 -11.76147 -11.17481 -11.08812 -11.04854 -10.94096 -10.90679 -10.78596 -10.64790 -10.20831 -10.14958 -9.91020 -9.64323 -9.57255 -9.14074 -8.80396 -8.50581 -8.32705 -6.82161 -5.69515 -2.96815 1.04235 1.16335 2.65385 2.97134 3.04030 3.47666 3.48921 3.53124 3.55468 4.05583 4.12014 4.51469 4.53784 4.65896 4.67672 4.76889 4.83167 4.94797 5.01907 5.07078 5.14480 5.16741 5.18694 5.25222 5.37193 5.38983 5.47005 5.47789 5.53761 5.61098 5.63316 5.78032 5.81506 5.99393 6.02783 6.08770 6.18128 6.18445 6.22852 6.24454 6.36008 6.41912 6.51451 6.61387 6.69545 6.81478 6.85735 7.01983 7.04565 7.08461 7.39548 7.77192 8.23305 8.50045 9.61069 10.20944 10.55730 11.53744 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.002289 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.729695 B =12228.061351 C =13663.891986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.611 5.611 3 C 0.128 3.872 4 C -0.086 4.086 5 C -0.121 4.121 6 C -0.136 4.136 7 C 0.165 3.835 8 N -0.728 5.728 9 C -0.234 4.234 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.906 3.094 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.293 1.293 17 C 0.512 3.488 18 O -0.520 6.520 19 C -0.139 4.139 20 C 0.099 3.901 21 H 0.096 0.904 22 C -0.106 4.106 23 C -0.181 4.181 24 C -0.071 4.071 25 C -0.155 4.155 26 C -0.084 4.084 27 C -0.140 4.140 28 C 0.114 3.886 29 O -0.284 6.284 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.017 0.983 42 H 0.019 0.981 43 H 0.385 0.615 44 H 0.253 0.747 45 H 0.104 0.896 46 H 0.112 0.888 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.122 0.878 50 H 0.126 0.874 51 H 0.130 0.870 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.527 -24.260 13.947 29.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C 0.005 3.995 4 C -0.087 4.087 5 C -0.178 4.178 6 C -0.193 4.193 7 C 0.037 3.963 8 N -0.373 5.373 9 C -0.365 4.365 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.220 1.220 17 C 0.299 3.701 18 O -0.395 6.395 19 C -0.179 4.179 20 C 0.043 3.957 21 H 0.113 0.887 22 C -0.143 4.143 23 C -0.182 4.182 24 C -0.089 4.089 25 C -0.173 4.173 26 C -0.102 4.102 27 C -0.158 4.158 28 C 0.068 3.932 29 O -0.198 6.198 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.037 0.963 43 H 0.220 0.780 44 H 0.063 0.937 45 H 0.122 0.878 46 H 0.130 0.870 47 H 0.110 0.890 48 H 0.111 0.889 49 H 0.140 0.860 50 H 0.144 0.856 51 H 0.148 0.852 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.743 -23.876 13.868 29.280 hybrid contribution 0.170 0.737 -0.503 0.909 sum -9.573 -23.139 13.364 28.384 Atomic orbital electron populations 1.21960 0.79949 1.03785 1.01532 1.47768 1.06696 1.06248 1.73703 1.21549 0.97299 0.83485 0.97136 1.21107 0.96375 0.96957 0.94257 1.21690 0.99249 0.96236 1.00669 1.21883 0.95835 0.99739 1.01824 1.20585 0.95683 0.91218 0.88826 1.42402 1.68131 1.25734 1.01015 1.19289 1.27453 0.98071 0.91736 0.91234 1.24721 1.01897 0.98991 0.95599 1.69668 1.51780 1.38852 0.98069 0.86125 0.79199 0.83250 0.77694 1.20621 1.21948 1.21996 1.20294 0.88187 0.84989 0.76647 1.90768 1.13536 1.86956 1.48222 1.21873 0.98559 0.92037 1.05408 1.23066 0.93552 0.93488 0.85615 0.88657 1.21859 0.99330 0.92663 1.00410 1.20770 1.00468 0.94557 1.02410 1.20278 0.98172 0.92516 0.97950 1.21009 0.98345 0.99833 0.98154 1.20895 0.98493 0.92258 0.98559 1.20365 0.99445 0.94878 1.01157 1.19666 0.94038 0.83742 0.95730 1.87016 1.75100 1.21348 1.36307 0.92772 0.90048 0.91343 0.90721 0.89849 0.94200 0.92348 0.92625 0.93314 0.91505 0.93644 0.96562 0.96328 0.78001 0.93665 0.87765 0.87000 0.89028 0.88933 0.85977 0.85630 0.85208 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 9.15 59.84 0.55 1.10 16 2 N -0.61 -7.11 2.40 -181.56 -0.44 -7.55 16 3 C 0.13 1.79 4.60 -4.04 -0.02 1.77 16 4 C -0.09 -1.47 0.60 -154.51 -0.09 -1.56 16 5 C -0.12 -2.33 6.97 37.15 0.26 -2.07 16 6 C -0.14 -2.18 7.05 37.16 0.26 -1.92 16 7 C 0.17 3.48 5.15 -4.04 -0.02 3.46 16 8 N -0.73 -19.00 5.00 -59.91 -0.30 -19.30 16 9 C -0.23 -6.75 9.99 -15.06 -0.15 -6.90 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 11 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 12 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 13 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 16 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 17 C 0.51 6.58 6.03 -10.99 -0.07 6.51 16 18 O -0.52 -8.90 13.46 2.93 0.04 -8.86 16 19 C -0.14 -1.21 3.94 -27.88 -0.11 -1.32 16 20 C 0.10 1.02 3.03 -25.83 -0.08 0.94 16 21 H 0.10 1.05 7.88 -51.93 -0.41 0.64 16 22 C -0.11 -0.81 6.65 -26.52 -0.18 -0.98 16 23 C -0.18 -1.82 6.27 -104.10 -0.65 -2.47 16 24 C -0.07 -0.60 10.03 -39.72 -0.40 -1.00 16 25 C -0.16 -1.26 10.07 -39.52 -0.40 -1.66 16 26 C -0.08 -0.75 10.01 -39.68 -0.40 -1.15 16 27 C -0.14 -1.59 10.06 -39.31 -0.40 -1.98 16 28 C 0.11 1.42 7.04 -38.95 -0.27 1.15 16 29 O -0.28 -3.99 10.53 -22.81 -0.24 -4.23 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.66 6.05 -51.93 -0.31 0.35 16 32 H 0.07 0.41 6.44 -51.93 -0.33 0.08 16 33 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.08 1.29 7.42 -51.93 -0.39 0.91 16 35 H 0.04 0.73 6.15 -51.93 -0.32 0.41 16 36 H 0.06 1.27 6.86 -51.93 -0.36 0.91 16 37 H 0.05 1.15 7.73 -51.92 -0.40 0.75 16 38 H 0.05 0.72 8.08 -51.93 -0.42 0.31 16 39 H 0.07 1.29 6.86 -51.93 -0.36 0.93 16 40 H 0.04 0.62 5.99 -51.93 -0.31 0.31 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.38 10.55 5.36 -40.82 -0.22 10.33 16 44 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.10 0.82 7.40 -51.93 -0.38 0.44 16 46 H 0.11 0.58 8.11 -51.93 -0.42 0.16 16 47 H 0.09 0.56 7.93 -51.93 -0.41 0.15 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 50 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 51 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 52 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 404.72 15.07 6.10 6.10 Total: -1.00 -35.77 404.72 -9.78 -45.56 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -8.39 Total: 7.21 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -2.26 Total: -8.67 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.01 Total: -55.14 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.20 Total: -13.09 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.77 -9.78 -45.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282295556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.677 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds