Wall clock time and date at job start Wed Apr 1 2020 04:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99891 * 2 1 4 4 C 1.53005 * 109.46922 * 270.00104 * 3 2 1 5 5 C 1.52993 * 109.47161 * 299.99978 * 4 3 2 6 6 C 1.52997 * 109.47181 * 59.99935 * 4 3 2 7 7 C 1.53005 * 109.46828 * 179.97438 * 4 3 2 8 8 N 1.46502 * 109.46852 * 180.02562 * 7 4 3 9 9 C 1.36940 * 119.99772 * 180.02562 * 8 7 4 10 10 H 1.07997 * 120.00050 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99560 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00749 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99970 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46769 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47198 * 119.99537 * 13 11 9 16 16 H 1.48500 * 109.47302 * 240.00205 * 13 11 9 17 17 C 1.34776 * 120.00086 * 180.02562 * 2 1 3 18 18 O 1.21287 * 119.99892 * 180.02562 * 17 2 1 19 19 C 1.50700 * 120.00173 * 0.02562 * 17 2 1 20 20 C 1.52998 * 109.47041 * 179.97438 * 19 17 2 21 21 H 1.08995 * 110.66999 * 51.78313 * 20 19 17 22 22 C 1.54707 * 110.74639 * 174.99962 * 20 19 17 23 23 C 1.51645 * 101.92201 * 143.81456 * 22 20 19 24 24 C 1.37741 * 132.17555 * 164.22111 * 23 22 20 25 25 C 1.38353 * 119.97655 * 180.54312 * 24 23 22 26 26 C 1.38283 * 119.76367 * 0.37865 * 25 24 23 27 27 C 1.37932 * 120.35368 * 359.26026 * 26 25 24 28 28 C 1.38884 * 107.03657 * 344.52428 * 23 22 20 29 29 O 1.36141 * 111.23901 * 359.06137 * 28 23 22 30 30 H 1.09000 * 109.46696 * 269.99799 * 1 2 3 31 31 H 1.09001 * 109.47601 * 29.99912 * 1 2 3 32 32 H 1.09004 * 109.47076 * 150.00490 * 1 2 3 33 33 H 1.09003 * 109.47038 * 29.99858 * 3 2 1 34 34 H 1.09000 * 109.47119 * 150.00573 * 3 2 1 35 35 H 1.08997 * 109.47540 * 59.99851 * 5 4 3 36 36 H 1.08998 * 109.47366 * 180.02562 * 5 4 3 37 37 H 1.09009 * 109.47363 * 299.99996 * 5 4 3 38 38 H 1.09003 * 109.47283 * 59.99938 * 6 4 3 39 39 H 1.09000 * 109.47095 * 179.97438 * 6 4 3 40 40 H 1.08997 * 109.47563 * 300.00229 * 6 4 3 41 41 H 1.08996 * 109.46864 * 299.99888 * 7 4 3 42 42 H 1.08997 * 109.46867 * 60.00067 * 7 4 3 43 43 H 0.96997 * 119.99816 * 359.97438 * 8 7 4 44 44 H 0.96998 * 120.00715 * 180.02562 * 12 11 9 45 45 H 1.08994 * 109.46958 * 59.99739 * 19 17 2 46 46 H 1.08996 * 109.46473 * 299.99904 * 19 17 2 47 47 H 1.09000 * 110.93994 * 25.65840 * 22 20 19 48 48 H 1.08997 * 110.93800 * 261.96983 * 22 20 19 49 49 H 1.07995 * 120.01289 * 0.52807 * 24 23 22 50 50 H 1.08002 * 120.11265 * 180.09204 * 25 24 23 51 51 H 1.08007 * 119.82195 * 179.52684 * 26 25 24 52 52 H 1.08000 * 119.87594 * 180.22216 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.2792 0.6442 -2.1638 6 6 1.1155 1.8933 -2.1638 7 6 3.2168 3.0358 -1.4425 8 7 3.4604 3.4590 -2.8238 9 6 4.1335 4.6251 -3.0740 10 1 4.4843 5.2329 -2.2531 11 6 4.3638 5.0263 -4.3827 12 7 3.9358 4.2859 -5.3832 13 14 5.2813 6.6173 -4.7242 14 1 5.6526 7.2603 -3.4381 15 1 6.5103 6.3224 -5.5037 16 1 4.4097 7.5342 -5.5019 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1671 -0.0001 19 6 1.3854 -2.4723 -0.0017 20 6 2.3797 -3.6352 -0.0027 21 1 3.1092 -3.5183 0.7986 22 6 1.6405 -4.9884 0.1222 23 6 2.4817 -5.8878 -0.7628 24 6 2.5583 -7.2579 -0.8823 25 6 3.4416 -7.8248 -1.7837 26 6 4.2503 -7.0116 -2.5563 27 6 4.1700 -5.6393 -2.4435 28 6 3.2801 -5.0605 -1.5418 29 8 3.0362 -3.7476 -1.2768 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8901 -0.5138 33 1 1.6083 2.0284 0.5138 34 1 3.1499 1.1384 0.5137 35 1 2.7344 -0.2998 -2.1638 36 1 3.4613 0.9590 -3.1913 37 1 4.2318 0.5139 -1.6500 38 1 0.5264 2.6530 -1.6500 39 1 1.2972 2.2084 -3.1913 40 1 0.5705 0.9494 -2.1638 41 1 2.6274 3.7952 -0.9289 42 1 4.1692 2.9059 -0.9286 43 1 3.1456 2.9129 -3.5610 44 1 4.0970 4.5660 -6.2977 45 1 0.7591 -2.5294 -0.8919 46 1 0.7585 -2.5306 0.8880 47 1 0.6213 -4.9120 -0.2568 48 1 1.6457 -5.3414 1.1534 49 1 1.9294 -7.8893 -0.2724 50 1 3.5024 -8.8988 -1.8803 51 1 4.9456 -7.4534 -3.2548 52 1 4.8028 -5.0114 -3.0533 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282295556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:07 Heat of formation + Delta-G solvation = -49.029230 kcal Electronic energy + Delta-G solvation = -30902.820089 eV Core-core repulsion = 26867.273153 eV Total energy + Delta-G solvation = -4035.546936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.20636 -41.11612 -38.84814 -38.22314 -36.38440 -34.95212 -34.11280 -32.51307 -31.95938 -30.93299 -29.02593 -28.56193 -27.81630 -27.28739 -26.28553 -24.49407 -23.46065 -22.76847 -22.56802 -20.40265 -19.79442 -19.13568 -18.56918 -18.06640 -17.61038 -17.34701 -16.88723 -16.67228 -16.41198 -15.91849 -15.60757 -15.49029 -15.13979 -15.01498 -14.61919 -14.38535 -14.25360 -14.16195 -14.03367 -13.86519 -13.81092 -13.65541 -13.40479 -13.12195 -13.00861 -12.89795 -12.82731 -12.64994 -12.57535 -12.43261 -12.42749 -12.24235 -12.07186 -11.79836 -11.67287 -11.64625 -11.62972 -11.50122 -10.96610 -10.69719 -9.83730 -9.52084 -9.08271 -8.99268 -7.96033 -5.24246 0.34762 0.42381 1.44315 1.46141 1.56120 1.71679 2.08311 2.32191 2.55026 2.78391 3.37015 3.39318 3.43051 3.74711 3.83837 3.86059 3.92508 3.96532 4.02406 4.16999 4.20635 4.25376 4.35257 4.41739 4.47110 4.49878 4.56863 4.58804 4.61027 4.68260 4.69649 4.81364 4.84363 4.89189 4.90812 4.91788 4.96141 5.02569 5.13951 5.14388 5.15605 5.18724 5.40352 5.41815 5.47217 5.47454 5.53781 5.55787 5.61889 5.77074 6.26369 6.29198 6.49818 7.29450 7.32453 8.09617 8.33472 9.28101 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.002289 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.729695 B =12228.061351 C =13663.891986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.609 5.609 3 C 0.136 3.864 4 C -0.076 4.076 5 C -0.103 4.103 6 C -0.125 4.125 7 C 0.162 3.838 8 N -0.740 5.740 9 C -0.243 4.243 10 H 0.075 0.925 11 C -0.079 4.079 12 N -0.972 5.972 13 Si 0.975 3.025 14 H -0.266 1.266 15 H -0.296 1.296 16 H -0.290 1.290 17 C 0.501 3.499 18 O -0.575 6.575 19 C -0.127 4.127 20 C 0.089 3.911 21 H 0.075 0.925 22 C -0.092 4.092 23 C -0.186 4.186 24 C -0.073 4.073 25 C -0.151 4.151 26 C -0.089 4.089 27 C -0.169 4.169 28 C 0.073 3.927 29 O -0.324 6.324 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.023 0.977 37 H 0.030 0.970 38 H 0.067 0.933 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.006 0.994 43 H 0.375 0.625 44 H 0.251 0.749 45 H 0.118 0.882 46 H 0.158 0.842 47 H 0.115 0.885 48 H 0.118 0.882 49 H 0.154 0.846 50 H 0.157 0.843 51 H 0.150 0.850 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.438 -25.763 16.160 33.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.341 5.341 3 C 0.013 3.987 4 C -0.077 4.077 5 C -0.160 4.160 6 C -0.183 4.183 7 C 0.035 3.965 8 N -0.383 5.383 9 C -0.374 4.374 10 H 0.093 0.907 11 C -0.271 4.271 12 N -0.623 5.623 13 Si 0.804 3.196 14 H -0.190 1.190 15 H -0.223 1.223 16 H -0.217 1.217 17 C 0.290 3.710 18 O -0.454 6.454 19 C -0.166 4.166 20 C 0.033 3.967 21 H 0.093 0.907 22 C -0.129 4.129 23 C -0.187 4.187 24 C -0.090 4.090 25 C -0.169 4.169 26 C -0.107 4.107 27 C -0.188 4.188 28 C 0.028 3.972 29 O -0.239 6.239 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.024 0.976 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.136 0.864 46 H 0.176 0.824 47 H 0.133 0.867 48 H 0.137 0.863 49 H 0.172 0.828 50 H 0.174 0.826 51 H 0.168 0.832 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.699 -25.383 16.129 32.645 hybrid contribution 1.113 1.124 -1.155 1.959 sum -11.586 -24.259 14.974 30.773 Atomic orbital electron populations 1.22287 0.76905 1.04925 1.03870 1.47866 1.08451 1.04909 1.72872 1.21296 0.97614 0.85591 0.94247 1.21013 0.96035 0.93996 0.96682 1.21491 0.98706 0.97399 0.98439 1.21793 0.95374 1.01705 0.99393 1.20750 0.95866 0.93623 0.86234 1.42602 1.67875 1.25066 1.02768 1.19702 1.26938 0.98757 0.92046 0.90711 1.25590 1.03422 1.02589 0.95482 1.69837 1.53453 1.40767 0.98215 0.85039 0.77470 0.79206 0.77843 1.18996 1.22290 1.21709 1.21143 0.87876 0.86561 0.75408 1.90754 1.16178 1.87806 1.50668 1.21952 0.97988 0.88592 1.08090 1.23241 0.93696 0.95862 0.83889 0.90693 1.21885 0.99416 0.90075 1.01490 1.21150 1.00200 0.95264 1.02074 1.20712 0.98205 0.92180 0.97948 1.21447 0.97181 1.01280 0.97017 1.21186 0.99112 0.91274 0.99158 1.20568 1.00167 0.96173 1.01911 1.20039 0.95822 0.83884 0.97438 1.86965 1.76184 1.22672 1.38094 0.89826 0.90122 0.89045 0.87819 0.91972 0.93382 0.95747 0.95126 0.91422 0.95287 0.90865 0.95062 0.97576 0.79165 0.94061 0.86377 0.82426 0.86719 0.86341 0.82786 0.82570 0.83229 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 9.15 127.77 1.17 1.86 16 2 N -0.61 -12.93 2.40 -846.73 -2.03 -14.97 16 3 C 0.14 3.68 4.60 86.38 0.40 4.08 16 4 C -0.08 -2.63 0.60 -52.18 -0.03 -2.66 16 5 C -0.10 -4.21 6.97 71.98 0.50 -3.71 16 6 C -0.13 -3.93 7.05 71.98 0.51 -3.43 16 7 C 0.16 6.98 5.15 86.38 0.44 7.42 16 8 N -0.74 -39.94 5.00 -343.45 -1.72 -41.66 16 9 C -0.24 -14.25 9.99 84.03 0.84 -13.41 16 10 H 0.07 4.22 7.83 -2.91 -0.02 4.20 16 11 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 12 N -0.97 -62.15 13.06 21.65 0.28 -61.87 16 13 Si 0.98 48.11 29.55 68.60 2.03 50.14 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 16 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 17 C 0.50 12.50 6.03 87.66 0.53 13.03 16 18 O -0.57 -20.67 13.46 -0.55 -0.01 -20.67 16 19 C -0.13 -1.90 3.94 29.85 0.12 -1.78 16 20 C 0.09 1.79 3.03 31.18 0.09 1.88 16 21 H 0.08 1.73 7.88 -2.39 -0.02 1.71 16 22 C -0.09 -1.16 6.65 30.73 0.20 -0.95 16 23 C -0.19 -3.49 6.27 -19.53 -0.12 -3.61 16 24 C -0.07 -1.04 10.03 22.18 0.22 -0.82 16 25 C -0.15 -2.13 10.07 22.31 0.22 -1.90 16 26 C -0.09 -1.59 10.01 22.21 0.22 -1.37 16 27 C -0.17 -4.17 10.06 22.45 0.23 -3.95 16 28 C 0.07 1.92 7.04 22.68 0.16 2.08 16 29 O -0.32 -9.66 10.53 -92.65 -0.98 -10.63 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 0.96 6.05 -2.39 -0.01 0.95 16 32 H 0.09 0.64 6.44 -2.39 -0.02 0.63 16 33 H 0.10 2.22 8.07 -2.39 -0.02 2.20 16 34 H 0.06 1.97 7.42 -2.39 -0.02 1.95 16 35 H 0.05 1.85 6.15 -2.39 -0.01 1.83 16 36 H 0.02 1.12 6.86 -2.39 -0.02 1.11 16 37 H 0.03 1.36 7.73 -2.38 -0.02 1.34 16 38 H 0.07 1.86 8.08 -2.39 -0.02 1.84 16 39 H 0.03 1.13 6.86 -2.39 -0.02 1.11 16 40 H 0.07 1.86 5.99 -2.39 -0.01 1.85 16 41 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.37 21.60 5.36 -92.71 -0.50 21.10 16 44 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 45 H 0.12 1.49 7.40 -2.39 -0.02 1.47 16 46 H 0.16 0.86 8.11 -2.39 -0.02 0.84 16 47 H 0.11 0.93 7.93 -2.39 -0.02 0.91 16 48 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 50 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 51 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 52 H 0.11 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -84.59 404.72 4.17 -80.42 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.42 Total: 30.76 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 6.17 Total: -11.52 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -3.47 Total: -118.49 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.98 Total: -31.31 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -84.59 4.17 -80.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282295556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.391 kcal (2) G-P(sol) polarization free energy of solvation -84.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds