Wall clock time and date at job start Wed Apr 1 2020 03:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47100 * 2 1 4 4 C 1.52996 * 109.47024 * 240.00068 * 2 1 3 5 5 O 1.42903 * 109.47184 * 60.00196 * 4 2 1 6 6 C 1.42902 * 113.99655 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.46664 * 180.02562 * 6 5 4 8 8 C 1.38241 * 119.99797 * 269.72477 * 7 6 5 9 9 C 1.38231 * 120.00062 * 179.76975 * 8 7 6 10 10 C 1.38238 * 119.99860 * 0.50161 * 9 8 7 11 11 C 1.38234 * 119.99957 * 359.75099 * 10 9 8 12 12 C 1.38227 * 120.00373 * 89.99974 * 7 6 5 13 13 C 1.50697 * 109.46760 * 120.00297 * 2 1 3 14 14 O 1.21282 * 120.00406 * 113.42232 * 13 2 1 15 15 N 1.34783 * 119.99825 * 293.41906 * 13 2 1 16 16 C 1.46970 * 120.59270 * 184.63176 * 15 13 2 17 17 C 1.53369 * 108.63098 * 235.24803 * 16 15 13 18 18 N 1.46960 * 108.63531 * 310.57344 * 17 16 15 19 19 C 1.36941 * 120.59259 * 235.20518 * 18 17 16 20 20 H 1.07997 * 119.99587 * 150.78773 * 19 18 17 21 21 C 1.38805 * 120.00093 * 330.50903 * 19 18 17 22 22 N 1.31622 * 120.00266 * 346.72356 * 21 19 18 23 23 Si 1.86796 * 119.99939 * 166.72270 * 21 19 18 24 24 H 1.48502 * 109.47067 * 60.00159 * 23 21 19 25 25 H 1.48499 * 109.47264 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47454 * 300.00153 * 23 21 19 27 27 C 1.46960 * 118.81172 * 55.48425 * 18 17 16 28 28 C 1.46960 * 120.59519 * 4.65092 * 15 13 2 29 29 H 1.09002 * 109.47372 * 289.24787 * 1 2 3 30 30 H 1.09004 * 109.46628 * 49.24629 * 1 2 3 31 31 H 1.08994 * 109.47204 * 169.24601 * 1 2 3 32 32 H 1.09003 * 109.47221 * 195.64259 * 3 2 1 33 33 H 1.08994 * 109.47353 * 315.64389 * 3 2 1 34 34 H 1.09004 * 109.47306 * 75.64860 * 3 2 1 35 35 H 1.09004 * 109.47173 * 180.02562 * 4 2 1 36 36 H 1.09003 * 109.47488 * 300.00288 * 4 2 1 37 37 H 1.08997 * 109.47332 * 299.99736 * 6 5 4 38 38 H 1.08995 * 109.47246 * 60.00125 * 6 5 4 39 39 H 1.08000 * 119.99720 * 359.97438 * 8 7 6 40 40 H 1.07996 * 120.00055 * 180.23131 * 9 8 7 41 41 H 1.07996 * 120.00241 * 179.72369 * 10 9 8 42 42 H 1.08003 * 120.00327 * 179.97438 * 11 10 9 43 43 H 1.08000 * 120.00204 * 359.97438 * 12 7 6 44 44 H 1.08998 * 109.60790 * 115.50064 * 16 15 13 45 45 H 1.09003 * 109.60773 * 354.98810 * 16 15 13 46 46 H 1.09002 * 109.60959 * 190.83063 * 17 16 15 47 47 H 1.09006 * 109.75200 * 70.40588 * 17 16 15 48 48 H 0.96997 * 120.00260 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.61654 * 64.26177 * 27 18 17 50 50 H 1.09001 * 109.61293 * 184.77432 * 27 18 17 51 51 H 1.08999 * 109.61192 * 244.49711 * 28 15 13 52 52 H 1.09004 * 109.60993 * 4.83702 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.5637 -0.0475 -2.4160 6 6 1.9849 -0.6443 -3.6443 7 6 1.4286 0.1437 -4.8022 8 6 0.1980 -0.1889 -5.3369 9 6 -0.3145 0.5368 -6.3959 10 6 0.4084 1.5887 -6.9270 11 6 1.6413 1.9180 -6.3957 12 6 2.1514 1.1955 -5.3333 13 6 2.0323 -0.7105 1.2304 14 8 2.6280 -1.7614 1.1232 15 7 1.8195 -0.1779 2.4502 16 6 2.3899 -0.8057 3.6503 17 6 1.2542 -1.0916 4.6406 18 7 0.4473 0.1269 4.7943 19 6 0.2303 0.6674 6.0336 20 1 0.0765 1.7312 6.1394 21 6 0.2023 -0.1526 7.1532 22 7 0.1212 -1.4585 7.0107 23 14 0.2797 0.5973 8.8623 24 1 -0.8769 1.5085 9.0559 25 1 0.2335 -0.4834 9.8797 26 1 1.5433 1.3632 9.0101 27 6 -0.1279 0.7515 3.5947 28 6 1.0125 1.0406 2.6038 29 1 -0.3634 0.3388 0.9702 30 1 -0.3633 0.6709 -0.7785 31 1 -0.3633 -1.0095 -0.1917 32 1 3.0942 1.4552 -0.2771 33 1 1.4684 2.0299 -0.7184 34 1 1.9210 1.8700 0.9956 35 1 3.1300 -0.7216 -1.2490 36 1 1.6766 -1.7489 -1.2493 37 1 3.0737 -0.6431 -3.6942 38 1 1.6200 -1.6701 -3.6937 39 1 -0.3645 -1.0138 -4.9251 40 1 -1.2775 0.2793 -6.8112 41 1 0.0101 2.1529 -7.7572 42 1 2.2063 2.7396 -6.8108 43 1 3.1147 1.4529 -4.9182 44 1 3.1129 -0.1304 4.1078 45 1 2.8804 -1.7398 3.3765 46 1 1.6734 -1.3769 5.6055 47 1 0.6286 -1.8993 4.2604 48 1 0.1020 -2.0316 7.7930 49 1 -0.8489 0.0730 3.1389 50 1 -0.6217 1.6838 3.8687 51 1 1.6374 1.8474 2.9869 52 1 0.5957 1.3276 1.6383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282907913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:07 Heat of formation + Delta-G solvation = -12.225592 kcal Electronic energy + Delta-G solvation = -30919.122840 eV Core-core repulsion = 26885.171829 eV Total energy + Delta-G solvation = -4033.951010 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.44319 -39.59219 -37.89556 -36.76915 -35.19517 -33.72757 -32.05363 -31.18966 -31.18364 -30.13679 -27.33309 -27.04437 -26.92428 -25.61500 -23.99245 -22.92096 -22.86895 -21.85480 -21.59057 -19.88424 -18.57351 -17.30295 -16.87706 -16.46972 -16.22457 -15.99008 -15.61971 -15.30314 -15.12808 -14.79799 -14.72573 -14.26866 -13.94067 -13.75539 -13.69705 -13.55427 -13.42205 -13.19982 -13.02818 -12.97844 -12.43351 -12.26048 -12.04591 -11.97727 -11.75273 -11.51300 -11.32052 -11.19859 -11.14818 -10.99469 -10.87231 -10.69505 -10.62077 -10.43222 -10.20404 -9.97356 -9.83545 -9.71967 -9.20748 -9.20514 -9.10254 -8.58934 -8.23882 -6.69274 -5.84281 -3.33003 0.97577 1.11755 2.96052 3.12392 3.34407 3.40414 3.40854 3.50020 3.94878 4.42989 4.53068 4.53748 4.60614 4.71399 4.82221 4.84760 4.94216 4.99444 5.12918 5.16830 5.25049 5.30633 5.33539 5.36259 5.53860 5.57112 5.62845 5.67722 5.68095 5.74984 5.79738 5.83452 5.89450 5.90212 6.01437 6.12171 6.15146 6.20920 6.25438 6.26849 6.31776 6.35869 6.40555 6.51042 6.68803 6.71043 6.87373 7.04014 7.27247 7.58322 7.70709 7.91119 8.37241 8.54113 9.12291 9.73960 10.31085 11.22403 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.027875 B = 0.001986 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.241175 B =14095.615327 C =14414.345601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.153 4.153 4 C 0.089 3.911 5 O -0.376 6.376 6 C 0.103 3.897 7 C -0.086 4.086 8 C -0.098 4.098 9 C -0.124 4.124 10 C -0.117 4.117 11 C -0.124 4.124 12 C -0.099 4.099 13 C 0.522 3.478 14 O -0.558 6.558 15 N -0.590 5.590 16 C 0.086 3.914 17 C 0.158 3.842 18 N -0.591 5.591 19 C -0.257 4.257 20 H 0.067 0.933 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.907 3.093 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.129 3.871 28 C 0.069 3.931 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.102 0.898 47 H 0.023 0.977 48 H 0.256 0.744 49 H 0.024 0.976 50 H 0.067 0.933 51 H 0.066 0.934 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.440 5.628 -25.069 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 C -0.210 4.210 4 C 0.012 3.988 5 O -0.296 6.296 6 C 0.026 3.974 7 C -0.086 4.086 8 C -0.116 4.116 9 C -0.142 4.142 10 C -0.135 4.135 11 C -0.142 4.142 12 C -0.117 4.117 13 C 0.309 3.691 14 O -0.438 6.438 15 N -0.321 5.321 16 C -0.037 4.037 17 C 0.032 3.968 18 N -0.314 5.314 19 C -0.386 4.386 20 H 0.084 0.916 21 C -0.195 4.195 22 N -0.547 5.547 23 Si 0.737 3.263 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.002 3.998 28 C -0.056 4.056 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.120 0.880 47 H 0.041 0.959 48 H 0.066 0.934 49 H 0.042 0.958 50 H 0.085 0.915 51 H 0.084 0.916 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.620 5.108 -24.921 25.574 hybrid contribution 0.142 0.089 0.940 0.955 sum 2.762 5.197 -23.981 24.693 Atomic orbital electron populations 1.22102 0.91829 1.03046 1.03471 1.20593 0.98156 0.97026 0.92124 1.22234 1.01431 0.93623 1.03746 1.22237 0.97961 0.95155 0.83399 1.87896 1.74862 1.54130 1.12673 1.21270 0.98111 0.95292 0.82707 1.19633 0.95416 0.97223 0.96338 1.21103 0.94773 0.99745 0.96026 1.21158 0.99986 0.96126 0.96927 1.21198 0.95004 0.97396 0.99909 1.21153 0.96257 0.99921 0.96917 1.21085 0.99994 0.94561 0.96052 1.20217 0.79535 0.84978 0.84389 1.90639 1.43644 1.22998 1.86499 1.47946 1.50622 1.27475 1.06074 1.22536 0.98187 0.97763 0.85243 1.21219 0.89821 0.87977 0.97812 1.43985 1.56451 1.29205 1.01711 1.19151 1.44893 0.91366 0.83195 0.91557 1.25147 1.00296 0.95500 0.98604 1.69964 1.53246 1.02497 1.29002 0.86304 0.78149 0.78055 0.83816 1.20836 1.21589 1.20939 1.21416 0.92436 0.97504 0.88472 1.23039 0.94788 0.86489 1.01240 0.90595 0.90869 0.92277 0.92529 0.90973 0.90378 0.92762 0.92356 0.92508 0.92427 0.85879 0.85948 0.86104 0.85981 0.85943 0.92177 0.90193 0.87962 0.95922 0.93371 0.95795 0.91488 0.91594 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 7.81 37.16 0.29 -1.60 16 2 C -0.08 -1.04 0.58 -155.66 -0.09 -1.13 16 3 C -0.15 -1.83 7.75 37.15 0.29 -1.54 16 4 C 0.09 1.16 4.04 37.16 0.15 1.31 16 5 O -0.38 -4.47 9.48 -35.23 -0.33 -4.81 16 6 C 0.10 1.00 6.06 36.01 0.22 1.22 16 7 C -0.09 -0.82 5.51 -104.62 -0.58 -1.40 16 8 C -0.10 -0.88 9.70 -39.58 -0.38 -1.26 16 9 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 10 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 11 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 12 C -0.10 -0.87 9.70 -39.59 -0.38 -1.25 16 13 C 0.52 9.16 6.48 -10.98 -0.07 9.09 16 14 O -0.56 -11.46 15.39 5.56 0.09 -11.38 16 15 N -0.59 -10.69 2.93 -172.21 -0.51 -11.19 16 16 C 0.09 1.74 6.60 -3.60 -0.02 1.72 16 17 C 0.16 3.77 5.48 -3.60 -0.02 3.75 16 18 N -0.59 -14.30 2.96 -171.77 -0.51 -14.81 16 19 C -0.26 -6.77 9.59 -15.06 -0.14 -6.91 16 20 H 0.07 1.70 7.86 -52.49 -0.41 1.28 16 21 C 0.00 0.09 5.00 -17.43 -0.09 0.00 16 22 N -0.90 -25.70 11.03 55.49 0.61 -25.09 16 23 Si 0.91 21.17 29.57 -169.99 -5.03 16.15 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.13 2.53 6.51 -3.37 -0.02 2.51 16 28 C 0.07 1.11 3.92 -3.37 -0.01 1.09 16 29 H 0.08 1.01 4.63 -51.93 -0.24 0.77 16 30 H 0.07 0.84 7.80 -51.93 -0.41 0.44 16 31 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 32 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 33 H 0.07 0.79 7.88 -51.93 -0.41 0.38 16 34 H 0.08 0.94 4.42 -51.93 -0.23 0.71 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.80 8.03 -51.93 -0.42 0.38 16 37 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 38 H 0.06 0.51 8.08 -51.93 -0.42 0.10 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.08 1.63 6.99 -51.93 -0.36 1.27 16 46 H 0.10 2.69 5.95 -51.93 -0.31 2.39 16 47 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.02 0.49 7.75 -51.93 -0.40 0.08 16 50 H 0.07 1.24 7.93 -51.93 -0.41 0.82 16 51 H 0.07 1.05 7.95 -51.93 -0.41 0.63 16 52 H 0.10 1.28 2.95 -51.93 -0.15 1.13 16 LS Contribution 403.06 15.07 6.07 6.07 Total: -1.00 -31.27 403.06 -10.03 -41.30 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -8.36 Total: 2.17 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -2.06 Total: 1.58 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.40 Total: -51.08 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.25 Total: -16.18 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.27 -10.03 -41.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282907913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.071 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds