Wall clock time and date at job start Wed Apr 1 2020 04:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47115 * 2 1 4 4 H 1.09004 * 109.52335 * 304.92029 * 3 2 1 5 5 C 1.53196 * 109.49887 * 65.00011 * 3 2 1 6 6 N 1.46920 * 108.77435 * 174.58832 * 5 3 2 7 7 C 1.34778 * 120.63229 * 126.37018 * 6 5 3 8 8 O 1.21275 * 119.99956 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00205 * 179.97438 * 7 6 5 10 10 C 1.50700 * 109.47171 * 180.02562 * 9 7 6 11 11 C 1.38284 * 119.97302 * 89.99812 * 10 9 7 12 12 C 1.38247 * 120.11057 * 179.97438 * 11 10 9 13 13 C 1.38164 * 120.05697 * 0.02562 * 12 11 10 14 14 C 1.38707 * 119.94252 * 0.02562 * 13 12 11 15 15 O 1.35901 * 120.05701 * 179.97438 * 14 13 12 16 16 C 1.42901 * 116.99830 * 359.97438 * 15 14 13 17 17 C 1.38126 * 119.96765 * 269.72424 * 10 9 7 18 18 C 1.46926 * 118.73951 * 306.38547 * 6 5 3 19 19 C 1.53198 * 108.77416 * 53.61367 * 18 6 5 20 20 C 1.53037 * 109.49812 * 184.83656 * 3 2 1 21 21 H 1.09003 * 109.45936 * 58.66824 * 20 3 2 22 22 N 1.46501 * 109.46116 * 298.70442 * 20 3 2 23 23 C 1.36936 * 119.99728 * 154.99795 * 22 20 3 24 24 H 1.08004 * 120.00534 * 0.02562 * 23 22 20 25 25 C 1.38813 * 119.99826 * 180.02562 * 23 22 20 26 26 N 1.31623 * 120.00068 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00173 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.46872 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.46962 * 119.99941 * 27 25 23 30 30 H 1.48490 * 109.47124 * 239.99987 * 27 25 23 31 31 H 1.09001 * 109.47525 * 300.00170 * 1 2 3 32 32 H 1.08999 * 109.47001 * 60.00004 * 1 2 3 33 33 H 1.08999 * 109.47351 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47001 * 239.99808 * 2 1 3 35 35 H 1.08999 * 109.47001 * 119.99996 * 2 1 3 36 36 H 1.08998 * 109.58545 * 294.37262 * 5 3 2 37 37 H 1.08995 * 109.58642 * 54.65750 * 5 3 2 38 38 H 1.09004 * 109.47298 * 300.00219 * 9 7 6 39 39 H 1.09002 * 109.46766 * 60.00073 * 9 7 6 40 40 H 1.07998 * 119.94579 * 359.97438 * 11 10 9 41 41 H 1.07998 * 119.97174 * 180.02562 * 12 11 10 42 42 H 1.07998 * 120.02731 * 180.02562 * 13 12 11 43 43 H 1.08999 * 109.47037 * 300.00343 * 16 15 14 44 44 H 1.08998 * 109.46997 * 60.00517 * 16 15 14 45 45 H 1.09001 * 109.47206 * 180.02562 * 16 15 14 46 46 H 1.07999 * 120.02764 * 0.02562 * 17 10 9 47 47 H 1.08998 * 109.58617 * 173.39731 * 18 6 5 48 48 H 1.08996 * 109.58899 * 293.68332 * 18 6 5 49 49 H 1.09003 * 109.49190 * 65.31478 * 19 18 6 50 50 H 1.08991 * 109.49673 * 185.37525 * 19 18 6 51 51 H 0.96994 * 119.99823 * 335.00287 * 22 20 3 52 52 H 0.96997 * 120.00374 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6069 1.9819 -0.8424 5 6 1.6350 2.1280 1.3088 6 7 2.2415 3.4656 1.3493 7 6 1.4814 4.5580 1.5628 8 8 0.2849 4.4423 1.7233 9 6 2.1184 5.9232 1.6021 10 6 1.0590 6.9648 1.8543 11 6 0.7430 7.3291 3.1504 12 6 -0.2281 8.2847 3.3850 13 6 -0.8858 8.8778 2.3245 14 6 -0.5714 8.5134 1.0237 15 8 -1.2173 9.0949 -0.0211 16 6 -2.2096 10.0740 0.2934 17 6 0.4084 7.5589 0.7905 18 6 3.6921 3.5898 1.1523 19 6 4.0741 2.8879 -0.1548 20 6 3.5655 1.4449 -0.1216 21 1 3.8574 0.9359 -1.0403 22 7 4.1479 0.7484 1.0282 23 6 5.3860 0.1726 0.9245 24 1 5.9334 0.2322 -0.0046 25 6 5.9377 -0.4877 2.0138 26 7 5.2709 -0.5600 3.1464 27 14 7.6263 -1.2739 1.8724 28 1 8.1623 -1.0527 0.5053 29 1 8.5425 -0.6613 2.8678 30 1 7.5169 -2.7318 2.1318 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5497 2.2174 1.3538 37 1 1.9885 1.5384 2.1547 38 1 2.8578 5.9563 2.4024 39 1 2.6062 6.1241 0.6482 40 1 1.2556 6.8663 3.9806 41 1 -0.4728 8.5678 4.3981 42 1 -1.6440 9.6246 2.5084 43 1 -2.9897 9.6178 0.9028 44 1 -1.7494 10.8932 0.8458 45 1 -2.6467 10.4574 -0.6285 46 1 0.6584 7.2769 -0.2216 47 1 3.9640 4.6437 1.0940 48 1 4.2155 3.1230 1.9866 49 1 3.6219 3.4138 -0.9957 50 1 5.1584 2.8897 -0.2652 51 1 3.6565 0.6952 1.8627 52 1 5.6562 -1.0217 3.9074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037970310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:51 Heat of formation + Delta-G solvation = -43.376182 kcal Electronic energy + Delta-G solvation = -31038.577541 eV Core-core repulsion = 27003.275740 eV Total energy + Delta-G solvation = -4035.301801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.47865 -39.85960 -38.14208 -37.24307 -34.40788 -33.75821 -32.66890 -31.67720 -30.64521 -29.45008 -28.84201 -27.72991 -27.16431 -24.72223 -23.77554 -23.46859 -22.67137 -21.54136 -20.77067 -19.53310 -18.27141 -17.75122 -17.37768 -16.81424 -16.46195 -16.11909 -15.92155 -15.65067 -15.18396 -14.69064 -14.37623 -14.17946 -13.99570 -13.91379 -13.60605 -13.32584 -13.22919 -13.18761 -13.03060 -12.67914 -12.48164 -12.23849 -12.20023 -11.94233 -11.75601 -11.57701 -11.34687 -11.23540 -11.07473 -11.01134 -10.93974 -10.80694 -10.69216 -10.28911 -10.24021 -10.14049 -9.77600 -9.57387 -9.54565 -8.94832 -8.87036 -8.29152 -8.18088 -6.98220 -5.80195 -3.08469 1.19867 1.38080 2.88152 3.06175 3.29495 3.40165 3.46582 3.48466 3.73720 4.55373 4.56483 4.63731 4.81428 4.85545 4.87823 4.91432 5.07895 5.15506 5.18448 5.24922 5.30922 5.34382 5.37163 5.47700 5.50570 5.56695 5.58830 5.61612 5.72071 5.82087 5.84811 5.92095 5.94440 6.11473 6.16766 6.17496 6.21773 6.31992 6.37370 6.40551 6.42715 6.50559 6.58224 6.62276 6.66789 6.72349 6.78932 6.95675 7.03583 7.24945 7.68109 7.76101 8.38330 8.45091 9.50118 10.07097 10.42215 11.42218 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.002424 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.461183 B =11548.011116 C =12290.336022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.065 0.935 5 C 0.119 3.881 6 N -0.602 5.602 7 C 0.515 3.485 8 O -0.545 6.545 9 C -0.104 4.104 10 C -0.020 4.020 11 C -0.141 4.141 12 C -0.080 4.080 13 C -0.212 4.212 14 C 0.125 3.875 15 O -0.319 6.319 16 C 0.029 3.971 17 C -0.136 4.136 18 C 0.112 3.888 19 C -0.150 4.150 20 C 0.178 3.822 21 H 0.050 0.950 22 N -0.718 5.718 23 C -0.236 4.236 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.098 0.902 46 H 0.128 0.872 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.048 0.952 50 H 0.074 0.926 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.206 18.531 -4.082 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.003 4.003 6 N -0.334 5.334 7 C 0.302 3.698 8 O -0.423 6.423 9 C -0.144 4.144 10 C -0.021 4.021 11 C -0.159 4.159 12 C -0.098 4.098 13 C -0.230 4.230 14 C 0.080 3.920 15 O -0.233 6.233 16 C -0.067 4.067 17 C -0.155 4.155 18 C -0.010 4.010 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.068 0.932 22 N -0.361 5.361 23 C -0.367 4.367 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.116 0.884 46 H 0.146 0.854 47 H 0.088 0.912 48 H 0.103 0.897 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.645 18.352 -4.249 22.146 hybrid contribution 0.816 -0.362 0.462 1.005 sum -10.828 17.990 -3.787 21.336 Atomic orbital electron populations 1.21852 0.96841 1.00993 1.01360 1.21414 0.94257 0.95793 1.03321 1.21741 0.97319 0.96097 0.97101 0.91642 1.21658 0.98753 0.81675 0.98191 1.48130 1.08636 1.06499 1.70150 1.20324 0.86949 0.85664 0.76813 1.90685 1.14806 1.86548 1.50220 1.20738 0.97458 0.91087 1.05085 1.19100 0.95644 0.94505 0.92814 1.20920 0.99672 0.99093 0.96202 1.20858 0.95038 0.95524 0.98402 1.21169 1.04686 1.05127 0.92055 1.18921 0.92981 0.93704 0.86374 1.86066 1.51435 1.54043 1.31735 1.23026 0.90267 0.90458 1.02913 1.20207 0.97564 0.98066 0.99671 1.21753 0.79191 1.00022 1.00054 1.22521 1.01775 0.99307 0.95499 1.20221 0.89783 0.90655 0.92566 0.93180 1.42484 1.19003 1.64005 1.10595 1.19259 0.93517 1.26842 0.97070 0.91221 1.24704 0.98535 1.01536 0.96058 1.69658 1.37998 1.48106 1.02269 0.86176 0.84306 0.78933 0.77101 1.20658 1.22019 1.22012 0.92788 0.93406 0.93194 0.92074 0.90510 0.89683 0.90846 0.87655 0.87831 0.85913 0.85832 0.85753 0.92706 0.92769 0.88367 0.85431 0.91206 0.89665 0.93306 0.90744 0.78092 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 37.16 0.36 -1.77 16 2 C -0.11 -1.77 5.19 -26.73 -0.14 -1.90 16 3 C -0.10 -1.67 2.14 -90.50 -0.19 -1.86 16 4 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 5 C 0.12 2.02 5.02 -3.71 -0.02 2.00 16 6 N -0.60 -9.52 2.97 -172.77 -0.51 -10.03 16 7 C 0.51 8.09 7.69 -10.98 -0.08 8.00 16 8 O -0.54 -10.37 15.45 5.56 0.09 -10.28 16 9 C -0.10 -1.24 4.18 -29.03 -0.12 -1.36 16 10 C -0.02 -0.26 4.37 -104.65 -0.46 -0.71 16 11 C -0.14 -1.69 9.70 -39.56 -0.38 -2.07 16 12 C -0.08 -0.86 10.04 -39.61 -0.40 -1.26 16 13 C -0.21 -2.28 9.04 -39.44 -0.36 -2.63 16 14 C 0.13 1.54 6.69 -39.22 -0.26 1.28 16 15 O -0.32 -3.65 10.50 -19.43 -0.20 -3.85 16 16 C 0.03 0.20 9.81 101.05 0.99 1.19 16 17 C -0.14 -1.77 9.64 -39.43 -0.38 -2.15 16 18 C 0.11 1.69 6.08 -3.71 -0.02 1.67 16 19 C -0.15 -2.38 5.78 -26.61 -0.15 -2.53 16 20 C 0.18 3.24 2.53 -67.89 -0.17 3.07 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.72 -16.16 3.72 -53.38 -0.20 -16.35 16 23 C -0.24 -6.04 9.93 -15.06 -0.15 -6.19 16 24 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -26.78 13.06 55.49 0.72 -26.05 16 27 Si 0.90 21.58 29.55 -169.99 -5.02 16.55 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 31 H 0.05 0.76 6.70 -51.93 -0.35 0.41 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 36 H 0.08 1.47 5.72 -51.93 -0.30 1.18 16 37 H 0.07 1.38 6.64 -51.93 -0.35 1.04 16 38 H 0.11 1.08 7.89 -51.93 -0.41 0.67 16 39 H 0.10 1.04 7.63 -51.93 -0.40 0.64 16 40 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.12 1.02 6.30 -52.49 -0.33 0.69 16 43 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 44 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 47 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 48 H 0.09 1.53 7.74 -51.93 -0.40 1.13 16 49 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 51 H 0.38 9.32 5.94 -40.82 -0.24 9.07 16 52 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 408.47 15.07 6.16 6.16 Total: -1.00 -31.31 408.47 -9.48 -40.79 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -8.47 Total: 10.73 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -2.04 Total: -7.65 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.01 Total: -52.44 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.12 Total: -14.14 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.31 -9.48 -40.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.583 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds