Wall clock time and date at job start Wed Apr 1 2020 04:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47115 * 2 1 4 4 H 1.09004 * 109.52335 * 304.92029 * 3 2 1 5 5 C 1.53196 * 109.49887 * 65.00011 * 3 2 1 6 6 N 1.46920 * 108.77435 * 174.58832 * 5 3 2 7 7 C 1.34778 * 120.63229 * 126.37018 * 6 5 3 8 8 O 1.21275 * 119.99956 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00205 * 179.97438 * 7 6 5 10 10 C 1.50700 * 109.47171 * 180.02562 * 9 7 6 11 11 C 1.38284 * 119.97302 * 89.99812 * 10 9 7 12 12 C 1.38247 * 120.11057 * 179.97438 * 11 10 9 13 13 C 1.38164 * 120.05697 * 0.02562 * 12 11 10 14 14 C 1.38707 * 119.94252 * 0.02562 * 13 12 11 15 15 O 1.35901 * 120.05701 * 179.97438 * 14 13 12 16 16 C 1.42901 * 116.99830 * 359.97438 * 15 14 13 17 17 C 1.38126 * 119.96765 * 269.72424 * 10 9 7 18 18 C 1.46926 * 118.73951 * 306.38547 * 6 5 3 19 19 C 1.53198 * 108.77416 * 53.61367 * 18 6 5 20 20 C 1.53037 * 109.49812 * 184.83656 * 3 2 1 21 21 H 1.09003 * 109.45936 * 58.66824 * 20 3 2 22 22 N 1.46501 * 109.46116 * 298.70442 * 20 3 2 23 23 C 1.36936 * 119.99728 * 154.99795 * 22 20 3 24 24 H 1.08004 * 120.00534 * 0.02562 * 23 22 20 25 25 C 1.38813 * 119.99826 * 180.02562 * 23 22 20 26 26 N 1.31623 * 120.00068 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00173 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.46872 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.46962 * 119.99941 * 27 25 23 30 30 H 1.48490 * 109.47124 * 239.99987 * 27 25 23 31 31 H 1.09001 * 109.47525 * 300.00170 * 1 2 3 32 32 H 1.08999 * 109.47001 * 60.00004 * 1 2 3 33 33 H 1.08999 * 109.47351 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47001 * 239.99808 * 2 1 3 35 35 H 1.08999 * 109.47001 * 119.99996 * 2 1 3 36 36 H 1.08998 * 109.58545 * 294.37262 * 5 3 2 37 37 H 1.08995 * 109.58642 * 54.65750 * 5 3 2 38 38 H 1.09004 * 109.47298 * 300.00219 * 9 7 6 39 39 H 1.09002 * 109.46766 * 60.00073 * 9 7 6 40 40 H 1.07998 * 119.94579 * 359.97438 * 11 10 9 41 41 H 1.07998 * 119.97174 * 180.02562 * 12 11 10 42 42 H 1.07998 * 120.02731 * 180.02562 * 13 12 11 43 43 H 1.08999 * 109.47037 * 300.00343 * 16 15 14 44 44 H 1.08998 * 109.46997 * 60.00517 * 16 15 14 45 45 H 1.09001 * 109.47206 * 180.02562 * 16 15 14 46 46 H 1.07999 * 120.02764 * 0.02562 * 17 10 9 47 47 H 1.08998 * 109.58617 * 173.39731 * 18 6 5 48 48 H 1.08996 * 109.58899 * 293.68332 * 18 6 5 49 49 H 1.09003 * 109.49190 * 65.31478 * 19 18 6 50 50 H 1.08991 * 109.49673 * 185.37525 * 19 18 6 51 51 H 0.96994 * 119.99823 * 335.00287 * 22 20 3 52 52 H 0.96997 * 120.00374 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6069 1.9819 -0.8424 5 6 1.6350 2.1280 1.3088 6 7 2.2415 3.4656 1.3493 7 6 1.4814 4.5580 1.5628 8 8 0.2849 4.4423 1.7233 9 6 2.1184 5.9232 1.6021 10 6 1.0590 6.9648 1.8543 11 6 0.7430 7.3291 3.1504 12 6 -0.2281 8.2847 3.3850 13 6 -0.8858 8.8778 2.3245 14 6 -0.5714 8.5134 1.0237 15 8 -1.2173 9.0949 -0.0211 16 6 -2.2096 10.0740 0.2934 17 6 0.4084 7.5589 0.7905 18 6 3.6921 3.5898 1.1523 19 6 4.0741 2.8879 -0.1548 20 6 3.5655 1.4449 -0.1216 21 1 3.8574 0.9359 -1.0403 22 7 4.1479 0.7484 1.0282 23 6 5.3860 0.1726 0.9245 24 1 5.9334 0.2322 -0.0046 25 6 5.9377 -0.4877 2.0138 26 7 5.2709 -0.5600 3.1464 27 14 7.6263 -1.2739 1.8724 28 1 8.1623 -1.0527 0.5053 29 1 8.5425 -0.6613 2.8678 30 1 7.5169 -2.7318 2.1318 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5497 2.2174 1.3538 37 1 1.9885 1.5384 2.1547 38 1 2.8578 5.9563 2.4024 39 1 2.6062 6.1241 0.6482 40 1 1.2556 6.8663 3.9806 41 1 -0.4728 8.5678 4.3981 42 1 -1.6440 9.6246 2.5084 43 1 -2.9897 9.6178 0.9028 44 1 -1.7494 10.8932 0.8458 45 1 -2.6467 10.4574 -0.6285 46 1 0.6584 7.2769 -0.2216 47 1 3.9640 4.6437 1.0940 48 1 4.2155 3.1230 1.9866 49 1 3.6219 3.4138 -0.9957 50 1 5.1584 2.8897 -0.2652 51 1 3.6565 0.6952 1.8627 52 1 5.6562 -1.0217 3.9074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037970310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:50 Heat of formation + Delta-G solvation = -60.394402 kcal Electronic energy + Delta-G solvation = -31039.315507 eV Core-core repulsion = 27003.275740 eV Total energy + Delta-G solvation = -4036.039767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.55171 -40.89136 -39.35155 -38.23848 -35.84627 -35.36103 -33.59666 -33.36446 -31.46231 -30.97194 -30.19942 -28.67897 -27.94482 -26.16360 -25.31067 -25.00582 -23.52127 -22.47468 -22.09523 -20.75669 -19.63153 -19.23151 -18.62713 -18.11319 -17.29163 -16.97748 -16.91044 -16.62034 -16.59008 -16.18051 -15.88416 -15.57007 -15.20205 -14.87614 -14.83968 -14.73232 -14.41945 -14.31801 -14.15611 -14.03137 -13.61941 -13.39130 -13.11459 -12.95920 -12.89975 -12.86983 -12.72483 -12.60947 -12.46503 -12.33759 -12.09451 -12.02713 -11.95787 -11.81898 -11.72378 -11.56526 -11.43794 -11.09833 -10.91235 -10.73858 -9.77625 -9.54532 -9.13529 -8.89096 -7.86531 -5.12297 0.32984 0.51396 1.49765 1.51553 1.59750 1.66262 2.06718 2.39117 2.61406 2.82301 3.47462 3.63329 3.68797 3.87228 3.89575 3.92772 4.07264 4.12097 4.12429 4.23038 4.30112 4.34842 4.39987 4.40265 4.41324 4.46097 4.49763 4.53070 4.62577 4.63071 4.73025 4.73815 4.78992 4.88079 4.92006 5.02613 5.07387 5.09006 5.18652 5.24478 5.28485 5.33322 5.35546 5.41770 5.47997 5.53386 5.63460 5.63685 5.70490 5.82026 6.35434 6.47355 6.52068 7.20681 7.43003 8.19664 8.43153 9.36940 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.002424 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.461183 B =11548.011116 C =12290.336022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.091 4.091 4 H 0.083 0.917 5 C 0.126 3.874 6 N -0.602 5.602 7 C 0.514 3.486 8 O -0.581 6.581 9 C -0.097 4.097 10 C -0.034 4.034 11 C -0.158 4.158 12 C -0.083 4.083 13 C -0.213 4.213 14 C 0.112 3.888 15 O -0.339 6.339 16 C 0.019 3.981 17 C -0.157 4.157 18 C 0.117 3.883 19 C -0.143 4.143 20 C 0.171 3.829 21 H 0.046 0.954 22 N -0.724 5.724 23 C -0.221 4.221 24 H 0.076 0.924 25 C -0.074 4.074 26 N -0.969 5.969 27 Si 0.962 3.038 28 H -0.267 1.267 29 H -0.299 1.299 30 H -0.302 1.302 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.118 0.882 46 H 0.127 0.873 47 H 0.110 0.890 48 H 0.053 0.947 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.373 0.627 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.509 20.720 -5.380 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.111 4.111 4 H 0.101 0.899 5 C 0.003 3.997 6 N -0.334 5.334 7 C 0.304 3.696 8 O -0.461 6.461 9 C -0.136 4.136 10 C -0.034 4.034 11 C -0.176 4.176 12 C -0.101 4.101 13 C -0.231 4.231 14 C 0.067 3.933 15 O -0.253 6.253 16 C -0.075 4.075 17 C -0.176 4.176 18 C -0.005 4.005 19 C -0.183 4.183 20 C 0.062 3.938 21 H 0.064 0.936 22 N -0.365 5.365 23 C -0.354 4.354 24 H 0.094 0.906 25 C -0.267 4.267 26 N -0.621 5.621 27 Si 0.793 3.207 28 H -0.191 1.191 29 H -0.226 1.226 30 H -0.230 1.230 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.167 0.833 42 H 0.167 0.833 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.136 0.864 46 H 0.145 0.855 47 H 0.128 0.872 48 H 0.071 0.929 49 H 0.095 0.905 50 H 0.087 0.913 51 H 0.206 0.794 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.941 20.576 -5.605 24.441 hybrid contribution 0.789 -0.969 0.804 1.486 sum -11.152 19.607 -4.801 23.062 Atomic orbital electron populations 1.21781 0.94917 1.01861 1.01754 1.21340 0.95936 0.95391 1.01708 1.21642 0.95941 0.96277 0.97216 0.89907 1.21444 0.98396 0.82348 0.97500 1.48177 1.08959 1.06137 1.70124 1.20980 0.86505 0.86702 0.75444 1.90666 1.16553 1.87175 1.51732 1.20776 0.97514 0.88216 1.07127 1.19224 0.96178 0.94901 0.93145 1.21176 1.00375 0.99750 0.96275 1.21215 0.94319 0.94830 0.99755 1.21486 1.04911 1.05320 0.91432 1.19133 0.93093 0.93832 0.87251 1.86037 1.52267 1.54948 1.32073 1.23330 0.89687 0.90037 1.04484 1.20373 0.98450 0.98960 0.99821 1.21730 0.78319 1.02064 0.98368 1.22396 1.01512 0.97518 0.96903 1.20458 0.90925 0.91766 0.90617 0.93614 1.42591 1.18178 1.64315 1.11410 1.19597 0.94175 1.24900 0.96691 0.90648 1.25370 1.01739 1.03366 0.96176 1.69810 1.39476 1.49911 1.02880 0.85227 0.80815 0.77275 0.77382 1.19112 1.22625 1.23011 0.93378 0.91919 0.92173 0.91933 0.93762 0.90138 0.93609 0.85699 0.85413 0.85209 0.83338 0.83272 0.92083 0.91376 0.86405 0.85507 0.87207 0.92875 0.90520 0.91268 0.79353 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.67 71.98 0.70 -3.25 16 2 C -0.11 -3.40 5.19 30.59 0.16 -3.24 16 3 C -0.09 -2.90 2.14 -10.72 -0.02 -2.92 16 4 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 5 C 0.13 4.31 5.02 86.37 0.43 4.74 16 6 N -0.60 -18.53 2.97 -818.92 -2.43 -20.97 16 7 C 0.51 15.57 7.69 87.66 0.67 16.24 16 8 O -0.58 -21.96 15.45 -3.02 -0.05 -22.01 16 9 C -0.10 -2.12 4.18 29.10 0.12 -1.99 16 10 C -0.03 -0.82 4.37 -19.88 -0.09 -0.91 16 11 C -0.16 -3.57 9.70 22.28 0.22 -3.36 16 12 C -0.08 -1.64 10.04 22.25 0.22 -1.41 16 13 C -0.21 -4.18 9.04 22.36 0.20 -3.97 16 14 C 0.11 2.63 6.69 22.51 0.15 2.78 16 15 O -0.34 -7.33 10.50 -92.44 -0.97 -8.30 16 16 C 0.02 0.22 9.81 113.37 1.11 1.34 16 17 C -0.16 -3.94 9.64 22.37 0.22 -3.72 16 18 C 0.12 3.36 6.08 86.36 0.53 3.88 16 19 C -0.14 -4.23 5.78 30.67 0.18 -4.06 16 20 C 0.17 6.10 2.53 45.02 0.11 6.21 16 21 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 22 N -0.72 -33.02 3.72 -322.81 -1.20 -34.22 16 23 C -0.22 -11.38 9.93 84.03 0.83 -10.55 16 24 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 25 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 26 N -0.97 -57.41 13.06 21.65 0.28 -57.13 16 27 Si 0.96 44.91 29.55 68.60 2.03 46.94 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 29 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 30 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 31 H 0.05 1.35 6.70 -2.39 -0.02 1.33 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.04 1.71 7.69 -2.39 -0.02 1.69 16 36 H 0.08 2.83 5.72 -2.39 -0.01 2.82 16 37 H 0.05 1.82 6.64 -2.39 -0.02 1.80 16 38 H 0.13 2.22 7.89 -2.38 -0.02 2.21 16 39 H 0.13 2.15 7.63 -2.39 -0.02 2.13 16 40 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 42 H 0.15 2.04 6.30 -2.91 -0.02 2.02 16 43 H 0.06 0.64 7.66 -2.39 -0.02 0.63 16 44 H 0.07 0.61 7.66 -2.39 -0.02 0.60 16 45 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 47 H 0.11 2.27 5.93 -2.39 -0.01 2.25 16 48 H 0.05 1.90 7.74 -2.39 -0.02 1.88 16 49 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.37 18.79 5.94 -92.71 -0.55 18.24 16 52 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -69.36 408.47 4.23 -65.13 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: 0.36 Total: 38.36 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 6.21 Total: -7.81 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -3.35 Total: -112.31 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.02 Total: -30.31 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -69.36 4.23 -65.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.738 kcal (2) G-P(sol) polarization free energy of solvation -69.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds