Wall clock time and date at job start Wed Apr 1 2020 04:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 120.00103 * 2 1 4 4 H 1.09003 * 109.46776 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47519 * 119.99883 * 3 2 1 6 6 C 1.53001 * 109.46992 * 295.00010 * 5 3 2 7 7 C 1.53002 * 109.46870 * 239.99906 * 3 2 1 8 8 C 1.50698 * 109.47324 * 65.00267 * 7 3 2 9 9 O 1.21286 * 119.99988 * 359.97438 * 8 7 3 10 10 N 1.34776 * 120.00102 * 180.02562 * 8 7 3 11 11 C 1.46500 * 119.99831 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46872 * 179.97438 * 11 10 8 13 13 N 1.46907 * 109.46965 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99930 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.46891 * 179.97438 * 14 13 12 16 16 C 1.38299 * 119.93247 * 90.00141 * 15 14 13 17 17 C 1.38101 * 120.07425 * 179.97438 * 16 15 14 18 18 C 1.38886 * 119.92536 * 0.02562 * 17 16 15 19 19 O 1.35750 * 120.06440 * 180.02562 * 18 17 16 20 20 C 1.34828 * 117.00075 * 5.53777 * 19 18 17 21 21 H 1.07993 * 120.00518 * 354.94289 * 20 19 18 22 22 C 1.38663 * 119.99751 * 174.94575 * 20 19 18 23 23 N 1.31556 * 120.00220 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99821 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47517 * 59.99414 * 24 22 20 26 26 H 1.48505 * 109.47332 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46989 * 299.99567 * 24 22 20 28 28 C 1.38874 * 119.86623 * 0.27854 * 18 17 16 29 29 C 1.38106 * 119.92542 * 359.44577 * 28 18 17 30 30 H 1.08003 * 120.00194 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00417 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.99839 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.46535 * 54.99862 * 5 3 2 34 34 H 1.08998 * 109.47399 * 175.00167 * 5 3 2 35 35 H 1.09005 * 109.46990 * 179.97438 * 6 5 3 36 36 H 1.08999 * 109.47371 * 299.99838 * 6 5 3 37 37 H 1.09002 * 109.47370 * 59.99706 * 6 5 3 38 38 H 1.08996 * 109.47078 * 304.99841 * 7 3 2 39 39 H 1.09003 * 109.47142 * 184.99818 * 7 3 2 40 40 H 0.96994 * 120.00142 * 359.97438 * 10 8 7 41 41 H 1.09008 * 109.47322 * 59.99850 * 11 10 8 42 42 H 1.09002 * 109.47747 * 300.00201 * 11 10 8 43 43 H 1.09001 * 109.46831 * 60.00839 * 12 11 10 44 44 H 1.08990 * 109.47270 * 300.00061 * 12 11 10 45 45 H 1.00899 * 110.99541 * 303.95735 * 13 12 11 46 46 H 1.08998 * 109.46720 * 60.00340 * 14 13 12 47 47 H 1.08996 * 109.47268 * 299.99941 * 14 13 12 48 48 H 1.07999 * 119.96503 * 0.02562 * 16 15 14 49 49 H 1.07992 * 120.03608 * 180.02562 * 17 16 15 50 50 H 0.96996 * 120.00178 * 179.97438 * 23 22 20 51 51 H 1.07996 * 120.03745 * 179.72497 * 28 18 17 52 52 H 1.07997 * 119.96326 * 180.27708 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0564 1.4309 2.4953 7 6 2.9431 1.3861 -1.2493 8 6 2.0698 1.4300 -2.4766 9 8 0.8626 1.3991 -2.3634 10 7 2.6302 1.5026 -3.7002 11 6 1.7812 1.5447 -4.8933 12 6 2.6608 1.6258 -6.1426 13 7 1.8094 1.6687 -7.3390 14 6 2.6217 1.7464 -8.5606 15 6 1.7159 1.7879 -9.7642 16 6 1.2765 3.0037 -10.2556 17 6 0.4468 3.0452 -11.3588 18 6 0.0532 1.8641 -11.9745 19 8 -0.7620 1.9016 -13.0594 20 6 -1.0609 3.1178 -13.5587 21 1 -0.7238 4.0085 -13.0494 22 6 -1.8012 3.2251 -14.7262 23 7 -2.2115 2.1402 -15.3470 24 14 -2.2148 4.9101 -15.4184 25 1 -0.9591 5.6427 -15.7211 26 1 -3.0081 4.7526 -16.6639 27 1 -3.0056 5.6746 -14.4206 28 6 0.4909 0.6445 -11.4749 29 6 1.3251 0.6101 -10.3748 30 1 -0.5400 0.9353 0.0004 31 1 -0.5401 -0.9353 0.0004 32 1 1.8499 -0.9353 0.0004 33 1 3.5906 0.5105 1.2951 34 1 3.5540 2.2879 1.2056 35 1 2.6831 1.4882 3.3853 36 1 1.4089 2.3065 2.4494 37 1 1.4455 0.5292 2.5390 38 1 3.5905 0.5104 -1.2951 39 1 3.5541 2.2877 -1.2057 40 1 3.5956 1.5270 -3.7908 41 1 1.1337 2.4205 -4.8478 42 1 1.1702 0.6431 -4.9367 43 1 3.3085 0.7503 -6.1883 44 1 3.2714 2.5276 -6.0991 45 1 1.1873 0.8749 -7.3686 46 1 3.2684 0.8713 -8.6231 47 1 3.2326 2.6486 -8.5339 48 1 1.5833 3.9218 -9.7767 49 1 0.1044 3.9949 -11.7423 50 1 -2.7297 2.2153 -16.1635 51 1 0.1829 -0.2757 -11.9488 52 1 1.6695 -0.3378 -9.9885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132667310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:06 Heat of formation + Delta-G solvation = -36.760556 kcal Electronic energy + Delta-G solvation = -28097.335956 eV Core-core repulsion = 24062.321030 eV Total energy + Delta-G solvation = -4035.014926 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.15851 -39.09269 -37.54200 -37.03969 -36.01446 -34.39018 -32.32764 -32.07166 -31.26051 -30.22996 -30.08100 -27.83467 -25.62327 -25.00066 -23.71628 -22.33622 -21.99808 -21.94914 -20.75732 -20.41636 -19.84227 -17.98653 -17.34027 -16.94469 -16.39078 -16.33031 -15.81333 -15.22124 -15.01869 -14.75340 -14.55518 -14.54273 -14.40600 -14.10234 -13.92099 -13.65244 -13.49873 -13.40722 -13.15127 -13.00417 -12.68512 -12.54562 -12.33650 -12.06691 -11.80099 -11.73172 -11.65855 -11.57896 -11.47188 -11.24037 -11.20836 -10.84706 -10.78526 -10.72185 -10.57461 -10.44267 -10.15046 -9.44029 -9.33712 -9.26408 -8.83734 -8.49582 -8.17460 -7.19740 -6.45253 -4.04101 2.18494 2.21211 2.26287 2.43587 2.84542 3.13757 3.14545 3.17378 3.96909 4.19684 4.35179 4.37461 4.41821 4.65718 4.68730 4.82637 4.85473 4.90292 4.99706 5.05588 5.09597 5.09930 5.19960 5.25001 5.29265 5.33428 5.39098 5.45545 5.51362 5.57309 5.67764 5.71142 5.72383 5.75843 5.81634 5.84411 5.86912 5.92071 6.13757 6.20823 6.42145 6.48753 6.67877 6.68962 6.87940 6.92747 7.07521 7.18137 7.20837 7.33875 7.41022 7.44944 7.82355 7.98989 7.99782 9.00313 9.70088 10.72641 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.022680 B = 0.001298 C = 0.001280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.285480 B =21571.265893 C =21867.110738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.156 4.156 3 C -0.045 4.045 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.152 4.152 7 C -0.134 4.134 8 C 0.509 3.491 9 O -0.528 6.528 10 N -0.734 5.734 11 C 0.120 3.880 12 C 0.048 3.952 13 N -0.682 5.682 14 C 0.121 3.879 15 C -0.189 4.189 16 C -0.047 4.047 17 C -0.236 4.236 18 C 0.156 3.844 19 O -0.177 6.177 20 C -0.393 4.393 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.863 5.863 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.269 1.269 28 C -0.194 4.194 29 C -0.068 4.068 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.398 0.602 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.032 0.968 44 H 0.076 0.924 45 H 0.345 0.655 46 H 0.029 0.971 47 H 0.071 0.929 48 H 0.107 0.893 49 H 0.127 0.873 50 H 0.271 0.729 51 H 0.116 0.884 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.269 -2.044 29.662 32.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C -0.064 4.064 4 H 0.100 0.900 5 C -0.153 4.153 6 C -0.209 4.209 7 C -0.174 4.174 8 C 0.295 3.705 9 O -0.403 6.403 10 N -0.387 5.387 11 C -0.004 4.004 12 C -0.082 4.082 13 N -0.314 5.314 14 C -0.007 4.007 15 C -0.190 4.190 16 C -0.066 4.066 17 C -0.255 4.255 18 C 0.102 3.898 19 O -0.081 6.081 20 C -0.469 4.469 21 H 0.109 0.891 22 C -0.164 4.164 23 N -0.497 5.497 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.213 4.213 29 C -0.087 4.087 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.232 0.768 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.094 0.906 45 H 0.163 0.837 46 H 0.047 0.953 47 H 0.089 0.911 48 H 0.125 0.875 49 H 0.144 0.856 50 H 0.080 0.920 51 H 0.134 0.866 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.022 -1.619 29.414 32.208 hybrid contribution 0.620 -0.074 -0.620 0.880 sum 13.642 -1.693 28.794 31.907 Atomic orbital electron populations 1.23728 0.95949 1.01434 0.98688 1.22608 0.95989 0.96983 1.01798 1.20163 0.96578 0.97200 0.92413 0.90019 1.21540 0.97847 1.01918 0.94038 1.21762 0.99848 1.02221 0.97080 1.21722 0.98704 1.04291 0.92716 1.20682 0.89308 0.76032 0.84451 1.90742 1.14783 1.48270 1.86518 1.45973 1.10338 1.76273 1.06101 1.21262 0.93256 1.03047 0.82800 1.22075 0.95141 1.00864 0.90070 1.60465 1.20695 1.49436 1.00797 1.20602 0.93229 1.00058 0.86792 1.19077 1.06691 0.93495 0.99762 1.20566 0.95248 0.96391 0.94415 1.21169 1.05540 0.98640 1.00145 1.19409 0.88946 0.93341 0.88067 1.83973 1.54799 1.32169 1.37110 1.21294 1.35187 0.82467 1.07947 0.89069 1.25288 0.96317 0.99442 0.95392 1.70027 1.34168 1.28024 1.17521 0.85784 0.78910 0.80222 0.78548 1.19493 1.20265 1.19458 1.20163 1.04571 0.96023 1.00567 1.20473 0.96694 0.96544 0.94949 0.88580 0.89166 0.88143 0.91852 0.91819 0.92888 0.92756 0.92366 0.88901 0.88776 0.76824 0.90452 0.91618 0.95027 0.90598 0.83671 0.95304 0.91080 0.87484 0.85577 0.91955 0.86604 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 13.22 29.02 0.38 -1.05 16 2 C -0.16 -1.22 6.76 -36.02 -0.24 -1.46 16 3 C -0.04 -0.30 1.82 -91.77 -0.17 -0.46 16 4 H 0.08 0.68 7.60 -51.93 -0.39 0.29 16 5 C -0.12 -0.56 5.39 -26.73 -0.14 -0.71 16 6 C -0.15 -0.79 9.73 37.16 0.36 -0.43 16 7 C -0.13 -0.74 5.16 -27.88 -0.14 -0.88 16 8 C 0.51 4.56 7.58 -10.99 -0.08 4.48 16 9 O -0.53 -6.89 14.17 5.55 0.08 -6.81 16 10 N -0.73 -5.36 5.56 -60.29 -0.33 -5.69 16 11 C 0.12 1.11 5.93 -4.04 -0.02 1.09 16 12 C 0.05 0.42 5.80 -3.82 -0.02 0.39 16 13 N -0.68 -7.94 6.49 -115.06 -0.75 -8.68 16 14 C 0.12 1.53 5.81 -4.98 -0.03 1.50 16 15 C -0.19 -3.12 5.40 -104.58 -0.56 -3.69 16 16 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 17 C -0.24 -5.13 9.17 -39.39 -0.36 -5.49 16 18 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 19 O -0.18 -5.09 9.76 0.05 0.00 -5.09 16 20 C -0.39 -11.02 9.49 30.89 0.29 -10.72 16 21 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 22 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 23 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 24 Si 0.94 20.55 29.55 -169.99 -5.02 15.52 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 28 C -0.19 -4.07 9.99 -39.39 -0.39 -4.46 16 29 C -0.07 -1.18 9.69 -39.61 -0.38 -1.56 16 30 H 0.10 0.93 7.83 -52.48 -0.41 0.52 16 31 H 0.09 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.34 7.38 -51.93 -0.38 -0.05 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.40 1.72 8.47 -40.82 -0.35 1.38 16 41 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.34 4.05 8.72 -39.29 -0.34 3.71 16 46 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 47 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 48 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 49 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 50 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 51 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 52 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 430.32 15.07 6.48 6.48 Total: -1.00 -32.76 430.32 -9.81 -42.57 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -8.76 Total: 6.45 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -2.26 Total: -20.19 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.32 Total: -38.95 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.08 Total: -11.89 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.48 Total: 6.48 kcal Total: -32.76 -9.81 -42.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132667310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.809 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds