Wall clock time and date at job start Wed Apr 1 2020 04:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 114.00229 * 2 1 4 4 H 1.09001 * 109.57388 * 30.15494 * 3 2 1 5 5 C 1.53118 * 109.52064 * 269.99817 * 3 2 1 6 6 C 1.53036 * 109.27814 * 182.43828 * 5 3 2 7 7 N 1.46844 * 109.52093 * 59.17918 * 6 5 3 8 8 C 1.46911 * 110.99659 * 174.16144 * 7 6 5 9 9 C 1.50695 * 109.46906 * 66.04656 * 8 7 6 10 10 O 1.21283 * 120.00243 * 354.04156 * 9 8 7 11 11 N 1.34776 * 119.99680 * 174.04286 * 9 8 7 12 12 C 1.46498 * 120.00126 * 184.94331 * 11 9 8 13 13 C 1.50702 * 109.47231 * 269.99839 * 12 11 9 14 14 H 1.08007 * 119.99623 * 0.27449 * 13 12 11 15 15 C 1.37872 * 120.00530 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99940 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00544 * 179.97438 * 15 13 12 18 18 H 1.48510 * 109.46831 * 60.00220 * 17 15 13 19 19 H 1.48493 * 109.47441 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47337 * 300.00778 * 17 15 13 21 21 C 1.39928 * 120.00080 * 4.93970 * 11 9 8 22 22 C 1.38871 * 120.07407 * 247.02257 * 21 11 9 23 23 C 1.38111 * 119.93077 * 179.69771 * 22 21 11 24 24 C 1.38284 * 120.06908 * 0.58034 * 23 22 21 25 25 C 1.38288 * 120.13933 * 359.71972 * 24 23 22 26 26 C 1.38112 * 120.07258 * 359.97438 * 25 24 23 27 27 C 1.46847 * 111.19890 * 298.25676 * 7 6 5 28 28 H 1.09003 * 109.46359 * 301.72471 * 27 7 6 29 29 C 1.53006 * 109.46119 * 181.76215 * 27 7 6 30 30 C 1.53036 * 109.52277 * 61.74636 * 27 7 6 31 31 H 1.09000 * 109.47052 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46994 * 300.00230 * 1 2 3 33 33 H 1.09002 * 109.46812 * 60.00288 * 1 2 3 34 34 H 1.09001 * 109.50412 * 62.49423 * 5 3 2 35 35 H 1.09003 * 109.50599 * 302.38079 * 5 3 2 36 36 H 1.08999 * 109.46154 * 299.16357 * 6 5 3 37 37 H 1.08999 * 109.46347 * 179.19400 * 6 5 3 38 38 H 1.08998 * 109.47084 * 306.04246 * 8 7 6 39 39 H 1.09006 * 109.46588 * 186.04645 * 8 7 6 40 40 H 1.08999 * 109.47522 * 150.00001 * 12 11 9 41 41 H 1.09000 * 109.47481 * 29.99936 * 12 11 9 42 42 H 0.96999 * 120.00109 * 179.97438 * 16 15 13 43 43 H 1.08004 * 120.03376 * 359.97438 * 22 21 11 44 44 H 1.07991 * 119.96505 * 180.29801 * 23 22 21 45 45 H 1.07998 * 119.92954 * 179.70064 * 24 23 22 46 46 H 1.07997 * 119.96347 * 180.02562 * 25 24 23 47 47 H 1.07999 * 120.03523 * 179.97438 * 26 25 24 48 48 H 1.08998 * 109.47309 * 60.00200 * 29 27 7 49 49 H 1.08997 * 109.46905 * 179.97438 * 29 27 7 50 50 H 1.08997 * 109.47059 * 299.99882 * 29 27 7 51 51 H 1.09000 * 109.49964 * 180.87986 * 30 27 7 52 52 H 1.08993 * 109.53698 * 60.77812 * 30 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3476 2.0003 0.5159 5 6 2.2185 1.7729 -1.4432 6 6 2.8966 3.1448 -1.4371 7 7 4.1872 3.0511 -0.7430 8 6 4.9290 4.3156 -0.8379 9 6 4.1912 5.3888 -0.0798 10 8 3.0987 5.1558 0.3924 11 7 4.7455 6.6077 0.0735 12 6 4.0793 7.6166 0.9009 13 6 3.1414 8.4285 0.0453 14 1 3.0473 8.2115 -1.0086 15 6 2.3988 9.4443 0.6089 16 7 2.5093 9.7050 1.8932 17 14 1.2367 10.4511 -0.4518 18 1 0.2184 9.5559 -1.0577 19 1 0.5604 11.4728 0.3871 20 1 2.0068 11.1244 -1.5282 21 6 5.9573 6.9097 -0.5576 22 6 7.1007 7.1285 0.1996 23 6 8.2966 7.4201 -0.4267 24 6 8.3536 7.5062 -1.8057 25 6 7.2155 7.2950 -2.5622 26 6 6.0179 6.9967 -1.9423 27 6 4.0087 2.6496 0.6582 28 1 3.3655 3.3703 1.1633 29 6 5.3708 2.6071 1.3538 30 6 3.3638 1.2629 0.7147 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.2535 1.8461 -1.9448 35 1 2.8497 1.0572 -1.9701 36 1 2.2586 3.8630 -0.9222 37 1 3.0592 3.4740 -2.4634 38 1 5.0188 4.6065 -1.8846 39 1 5.9232 4.1866 -0.4101 40 1 4.8270 8.2739 1.3449 41 1 3.5144 7.1228 1.6915 42 1 1.9871 10.4199 2.2897 43 1 7.0557 7.0662 1.2769 44 1 9.1871 7.5856 0.1613 45 1 9.2889 7.7391 -2.2928 46 1 7.2634 7.3625 -3.6390 47 1 5.1293 6.8323 -2.5337 48 1 5.8299 3.5950 1.3145 49 1 5.2384 2.3096 2.3940 50 1 6.0144 1.8870 0.8487 51 1 3.2171 0.9720 1.7549 52 1 4.0127 0.5388 0.2223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281596914.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:16 Heat of formation + Delta-G solvation = -40.931444 kcal Electronic energy + Delta-G solvation = -32158.874534 eV Core-core repulsion = 28123.678744 eV Total energy + Delta-G solvation = -4035.195790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.52490 -39.27142 -38.18614 -36.85106 -34.84640 -32.86608 -32.38992 -32.28506 -30.73065 -29.43670 -28.29720 -27.28300 -26.39835 -25.82581 -23.32841 -22.71521 -22.38572 -22.09074 -21.18454 -19.83995 -18.99197 -17.05715 -16.60172 -16.46677 -16.12814 -16.01941 -15.62891 -15.34301 -15.15435 -14.94767 -14.73071 -14.38713 -14.31289 -13.96536 -13.50514 -13.20759 -13.12067 -13.09579 -12.70435 -12.46719 -12.27301 -12.14429 -12.01597 -11.77068 -11.65270 -11.60186 -11.45558 -11.26598 -11.09841 -10.90462 -10.84831 -10.70401 -10.65770 -10.47875 -10.35215 -10.22164 -9.87414 -9.77493 -9.46517 -8.77442 -8.72176 -8.49128 -7.81324 -7.68855 -6.11131 -4.15675 1.52585 1.61067 3.14957 3.27695 3.31753 3.34800 3.67582 3.76535 3.99651 4.01888 4.39212 4.83730 4.86977 4.95192 5.09982 5.14102 5.14630 5.19600 5.24199 5.29082 5.31786 5.32553 5.42082 5.48700 5.54029 5.60950 5.63432 5.64917 5.68562 5.76808 5.78369 5.93881 5.95932 5.98683 6.03771 6.06426 6.11534 6.21366 6.22373 6.37052 6.53144 6.56615 6.69781 6.75737 6.90102 7.12243 7.15282 7.20528 7.23839 7.29075 7.42356 7.83657 8.12840 8.26740 8.76811 8.91257 9.48880 10.97171 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.008564 B = 0.004020 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3268.624697 B = 6963.564831 C = 9059.883023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.087 3.913 4 H 0.061 0.939 5 C -0.131 4.131 6 C 0.040 3.960 7 N -0.509 5.509 8 C 0.032 3.968 9 C 0.483 3.517 10 O -0.525 6.525 11 N -0.560 5.560 12 C 0.249 3.751 13 C -0.524 4.524 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.276 1.276 21 C 0.163 3.837 22 C -0.125 4.125 23 C -0.109 4.109 24 C -0.134 4.134 25 C -0.109 4.109 26 C -0.124 4.124 27 C 0.062 3.938 28 H 0.082 0.918 29 C -0.145 4.145 30 C -0.100 4.100 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.034 0.966 41 H 0.045 0.955 42 H 0.264 0.736 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.055 0.945 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.069 0.931 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.525 -13.599 -5.722 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.030 3.970 4 H 0.079 0.921 5 C -0.169 4.169 6 C -0.087 4.087 7 N -0.233 5.233 8 C -0.100 4.100 9 C 0.271 3.729 10 O -0.403 6.403 11 N -0.288 5.288 12 C 0.131 3.869 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C 0.071 3.929 22 C -0.145 4.145 23 C -0.127 4.127 24 C -0.152 4.152 25 C -0.127 4.127 26 C -0.144 4.144 27 C -0.046 4.046 28 H 0.099 0.901 29 C -0.202 4.202 30 C -0.138 4.138 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.087 0.913 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.196 -14.145 -5.508 16.799 hybrid contribution -1.391 1.790 -0.215 2.277 sum 5.805 -12.355 -5.723 14.802 Atomic orbital electron populations 1.22750 0.81512 1.02251 1.00037 1.87877 1.19310 1.28346 1.95132 1.22227 0.95038 0.83931 0.95833 0.92051 1.22007 1.00418 0.97391 0.97056 1.22246 0.90640 0.96923 0.98932 1.62455 1.19641 1.26843 1.14318 1.22393 0.98581 0.87444 1.01559 1.21767 0.86489 0.83413 0.81280 1.90580 1.20014 1.80248 1.49421 1.46140 1.19920 1.13905 1.48818 1.19397 0.92342 0.84997 0.90192 1.21290 1.23805 1.15757 0.95441 0.92566 1.24898 0.96826 0.97126 0.95039 1.69915 1.41424 1.31308 1.10681 0.86561 0.81000 0.79715 0.80199 1.20204 1.21089 1.20174 1.17733 0.85962 0.98059 0.91132 1.21298 0.91830 1.01132 1.00246 1.20967 0.97278 0.99836 0.94658 1.21064 0.98315 1.01830 0.94020 1.20971 0.92431 0.99683 0.99635 1.21339 0.98177 1.00976 0.93919 1.21884 0.97499 0.96336 0.88867 0.90066 1.21868 0.96456 1.01976 0.99913 1.21609 0.94730 0.97216 1.00278 0.89974 0.94111 0.94169 0.91819 0.90741 0.91088 0.91110 0.88269 0.87949 0.94834 0.93733 0.92602 0.85865 0.86093 0.86363 0.86113 0.86059 0.92633 0.92227 0.92002 0.91272 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.42 16 2 O -0.39 -5.14 10.35 -35.23 -0.36 -5.50 16 3 C 0.09 1.19 2.68 -26.61 -0.07 1.11 16 4 H 0.06 0.90 7.79 -51.93 -0.40 0.49 16 5 C -0.13 -1.72 5.71 -26.65 -0.15 -1.87 16 6 C 0.04 0.60 5.09 -3.84 -0.02 0.58 16 7 N -0.51 -7.48 4.69 -228.11 -1.07 -8.55 16 8 C 0.03 0.48 3.98 -4.97 -0.02 0.46 16 9 C 0.48 9.47 6.78 -10.99 -0.07 9.40 16 10 O -0.53 -12.01 11.28 5.55 0.06 -11.94 16 11 N -0.56 -11.57 2.51 -114.74 -0.29 -11.86 16 12 C 0.25 6.37 5.07 -5.19 -0.03 6.34 16 13 C -0.52 -14.67 9.39 -34.44 -0.32 -15.00 16 14 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 15 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 17 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 C 0.16 2.85 4.39 -83.69 -0.37 2.48 16 22 C -0.13 -1.94 9.65 -39.39 -0.38 -2.32 16 23 C -0.11 -1.38 10.04 -39.61 -0.40 -1.78 16 24 C -0.13 -1.59 10.04 -39.55 -0.40 -1.99 16 25 C -0.11 -1.38 10.04 -39.61 -0.40 -1.78 16 26 C -0.12 -1.93 8.50 -39.39 -0.33 -2.27 16 27 C 0.06 0.91 1.95 -67.72 -0.13 0.78 16 28 H 0.08 1.47 5.58 -51.93 -0.29 1.18 16 29 C -0.14 -1.86 8.76 37.16 0.33 -1.53 16 30 C -0.10 -1.33 5.03 -26.65 -0.13 -1.47 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.04 0.39 7.94 -51.93 -0.41 -0.02 16 34 H 0.06 0.78 7.94 -51.93 -0.41 0.36 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.29 5.80 -51.93 -0.30 0.99 16 37 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 38 H 0.10 1.40 7.00 -51.93 -0.36 1.04 16 39 H 0.10 1.44 6.19 -51.93 -0.32 1.12 16 40 H 0.03 0.89 7.83 -51.93 -0.41 0.48 16 41 H 0.04 1.27 7.50 -51.93 -0.39 0.88 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 44 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.12 1.90 7.97 -52.49 -0.42 1.48 16 48 H 0.05 0.76 6.24 -51.93 -0.32 0.43 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 51 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 52 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 407.50 15.07 6.14 6.14 Total: -1.00 -31.46 407.50 -10.37 -41.82 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.65 Total: 4.40 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -1.91 Total: -5.73 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.62 Total: -45.97 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.30 Total: -17.45 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.46 -10.37 -41.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281596914.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.892 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds