Wall clock time and date at job start Wed Apr 1 2020 04:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50700 * 109.47533 * 2 1 4 4 O 1.21273 * 120.00065 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99845 * 180.02562 * 3 2 1 6 6 C 1.46499 * 119.99799 * 180.02562 * 5 3 2 7 7 H 1.09001 * 109.50231 * 324.99458 * 6 5 3 8 8 C 1.53033 * 109.53890 * 85.09114 * 6 5 3 9 9 N 1.46852 * 109.52166 * 179.14127 * 8 6 5 10 10 C 1.46900 * 110.99862 * 174.16253 * 9 8 6 11 11 C 1.50701 * 109.47374 * 58.16286 * 10 9 8 12 12 C 1.38302 * 119.93027 * 269.72759 * 11 10 9 13 13 C 1.38107 * 120.06772 * 179.72288 * 12 11 10 14 14 C 1.38877 * 119.92595 * 0.56887 * 13 12 11 15 15 O 1.35754 * 120.06612 * 179.68224 * 14 13 12 16 16 C 1.34823 * 117.00339 * 174.48922 * 15 14 13 17 17 H 1.08001 * 119.99816 * 5.05277 * 16 15 14 18 18 C 1.38650 * 120.00419 * 185.05893 * 16 15 14 19 19 N 1.31559 * 119.99677 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00280 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47276 * 89.99417 * 20 18 16 22 22 H 1.48506 * 109.46911 * 209.99770 * 20 18 16 23 23 H 1.48496 * 109.46773 * 329.99319 * 20 18 16 24 24 C 1.38872 * 119.86773 * 359.70515 * 14 13 12 25 25 C 1.38100 * 119.92900 * 0.02562 * 24 14 13 26 26 C 1.46855 * 111.19856 * 298.25454 * 9 8 6 27 27 C 1.53043 * 109.51604 * 61.74399 * 26 9 8 28 28 C 1.53116 * 109.50216 * 204.91885 * 6 5 3 29 29 H 1.09004 * 109.52431 * 302.26385 * 28 6 5 30 30 C 1.53002 * 109.52685 * 62.38887 * 28 6 5 31 31 H 1.09006 * 109.47049 * 59.99727 * 1 2 3 32 32 H 1.08998 * 109.47826 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46843 * 300.00045 * 1 2 3 34 34 H 1.08999 * 109.46843 * 239.99955 * 2 1 3 35 35 H 1.09005 * 109.46948 * 120.00812 * 2 1 3 36 36 H 0.97001 * 120.00189 * 359.97438 * 5 3 2 37 37 H 1.08998 * 109.46440 * 299.15650 * 8 6 5 38 38 H 1.08998 * 109.46411 * 59.12682 * 8 6 5 39 39 H 1.09001 * 109.47245 * 178.16392 * 10 9 8 40 40 H 1.09000 * 109.47428 * 298.16376 * 10 9 8 41 41 H 1.07997 * 119.96384 * 359.97438 * 12 11 10 42 42 H 1.07994 * 120.03533 * 180.27183 * 13 12 11 43 43 H 0.97007 * 119.99934 * 179.97438 * 19 18 16 44 44 H 1.07999 * 120.03538 * 179.97438 * 24 14 13 45 45 H 1.08006 * 119.96662 * 180.02562 * 25 24 14 46 46 H 1.08994 * 109.46142 * 301.73230 * 26 9 8 47 47 H 1.08993 * 109.45187 * 181.75361 * 26 9 8 48 48 H 1.08998 * 109.49550 * 180.87590 * 27 26 9 49 49 H 1.08994 * 109.49979 * 60.76383 * 27 26 9 50 50 H 1.09004 * 109.46663 * 60.00455 * 30 28 6 51 51 H 1.08996 * 109.46889 * 179.97438 * 30 28 6 52 52 H 1.08992 * 109.47137 * 300.00564 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2444 2.3426 0.0005 5 7 3.3575 1.6669 -0.0005 6 6 3.8459 3.0481 0.0000 7 1 3.1734 3.6721 -0.5887 8 6 3.9009 3.5709 1.4372 9 7 4.4099 4.9484 1.4392 10 6 4.3465 5.5311 2.7861 11 6 5.1454 4.6805 3.7397 12 6 4.5328 3.6419 4.4170 13 6 5.2635 2.8570 5.2872 14 6 6.6121 3.1190 5.4907 15 8 7.3315 2.3533 6.3504 16 6 8.6576 2.5876 6.4159 17 1 9.0888 3.4089 5.8628 18 6 9.4679 1.7741 7.1931 19 7 8.9425 0.7738 7.8671 20 14 11.3051 2.0991 7.2844 21 1 11.5880 3.0305 8.4058 22 1 12.0236 0.8192 7.5106 23 1 11.7643 2.7058 6.0092 24 6 7.2230 4.1663 4.8135 25 6 6.4881 4.9440 3.9404 26 6 5.7756 5.0106 0.9028 27 6 5.7764 4.5306 -0.5505 28 6 5.2500 3.0940 -0.6088 29 1 5.9138 2.4397 -0.0434 30 6 5.1916 2.6281 -2.0650 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3635 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 1.8932 -0.5140 0.8900 36 1 3.9878 0.9296 -0.0005 37 1 2.9001 3.5530 1.8688 38 1 4.5627 2.9383 2.0288 39 1 4.7595 6.5397 2.7656 40 1 3.3085 5.5703 3.1166 41 1 3.4828 3.4419 4.2621 42 1 4.7856 2.0433 5.8124 43 1 9.5094 0.2044 8.4106 44 1 8.2714 4.3727 4.9701 45 1 6.9627 5.7584 3.4131 46 1 6.4285 4.3712 1.4968 47 1 6.1361 6.0382 0.9461 48 1 6.7926 4.5622 -0.9434 49 1 5.1344 5.1780 -1.1478 50 1 4.5295 3.2844 -2.6300 51 1 6.1915 2.6616 -2.4975 52 1 4.8119 1.6072 -2.1048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964528362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:56 Heat of formation + Delta-G solvation = -52.330345 kcal Electronic energy + Delta-G solvation = -31153.920156 eV Core-core repulsion = 27118.230073 eV Total energy + Delta-G solvation = -4035.690083 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.42898 -39.38960 -38.51965 -36.81690 -35.01240 -33.58813 -32.91637 -32.33083 -30.41249 -30.15938 -29.56782 -27.68856 -25.62951 -24.88748 -24.29936 -22.87184 -21.84215 -21.72271 -20.65766 -20.32989 -19.57874 -18.04088 -17.21681 -17.00950 -16.50635 -15.86764 -15.28253 -15.14023 -14.94688 -14.57514 -14.50819 -14.39330 -14.02609 -13.75713 -13.67676 -13.58063 -13.38125 -13.26731 -12.82064 -12.75578 -12.52678 -12.32645 -12.23950 -12.21266 -11.94123 -11.76957 -11.49706 -11.34526 -11.29835 -11.15570 -11.03043 -10.88023 -10.82947 -10.70092 -10.60865 -10.48769 -10.39955 -9.86105 -9.39369 -9.13455 -8.88618 -8.23474 -8.17219 -7.23997 -6.50969 -4.10034 2.14440 2.22047 2.56008 3.02970 3.08174 3.08861 3.13667 3.91236 4.13772 4.46314 4.53119 4.63761 4.66523 4.76490 4.87039 4.90012 5.03576 5.12119 5.21322 5.29347 5.32294 5.38536 5.39550 5.41496 5.47807 5.53207 5.58070 5.60289 5.67904 5.72686 5.77492 5.82023 5.89839 5.93007 5.94456 6.00251 6.01094 6.08293 6.10205 6.15278 6.28749 6.35479 6.41409 6.64107 6.83624 6.98130 7.10851 7.17435 7.24072 7.35057 7.38212 7.41495 7.76123 7.93883 8.14786 8.94619 9.64338 10.66927 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.002703 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.811117 B =10356.338974 C =11036.370228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.146 4.146 3 C 0.511 3.489 4 O -0.539 6.539 5 N -0.725 5.725 6 C 0.154 3.846 7 H 0.093 0.907 8 C 0.046 3.954 9 N -0.526 5.526 10 C 0.110 3.890 11 C -0.221 4.221 12 C -0.062 4.062 13 C -0.194 4.194 14 C 0.157 3.843 15 O -0.177 6.177 16 C -0.392 4.392 17 H 0.091 0.909 18 C 0.040 3.960 19 N -0.862 5.862 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.268 1.268 24 C -0.235 4.235 25 C -0.059 4.059 26 C 0.047 3.953 27 C -0.106 4.106 28 C -0.101 4.101 29 H 0.074 0.926 30 C -0.143 4.143 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.399 0.601 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.104 0.896 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.055 0.945 51 H 0.056 0.944 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.476 1.751 -18.135 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.186 4.186 3 C 0.298 3.702 4 O -0.415 6.415 5 N -0.377 5.377 6 C 0.049 3.951 7 H 0.111 0.889 8 C -0.083 4.083 9 N -0.249 5.249 10 C -0.017 4.017 11 C -0.224 4.224 12 C -0.081 4.081 13 C -0.214 4.214 14 C 0.102 3.898 15 O -0.081 6.081 16 C -0.469 4.469 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.255 4.255 25 C -0.078 4.078 26 C -0.081 4.081 27 C -0.145 4.145 28 C -0.120 4.120 29 H 0.092 0.908 30 C -0.201 4.201 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.234 0.766 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.122 0.878 46 H 0.064 0.936 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.074 0.926 51 H 0.075 0.925 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.341 2.336 -18.143 20.540 hybrid contribution 1.951 -0.744 0.768 2.225 sum -7.390 1.593 -17.375 18.948 Atomic orbital electron populations 1.21516 0.93055 1.01483 1.03348 1.21649 0.98698 0.93957 1.04329 1.20777 0.82137 0.91812 0.75493 1.90709 1.55217 1.46511 1.49071 1.46084 1.07175 1.08813 1.75621 1.20967 0.95086 0.82336 0.96671 0.88875 1.22407 1.00648 0.89438 0.95799 1.62332 1.21607 1.18792 1.22159 1.20932 0.99244 0.96442 0.85081 1.19941 0.95248 1.02125 1.05058 1.20512 0.97998 0.94385 0.95156 1.20204 0.92552 1.03874 1.04736 1.19384 0.91554 0.90146 0.88673 1.83977 1.20862 1.52275 1.50942 1.21315 0.79624 1.15321 1.30600 0.89114 1.25291 1.00325 0.95051 0.95801 1.70040 1.36296 1.15981 1.27342 0.85720 0.80494 0.78193 0.79086 1.19820 1.20196 1.19202 1.21148 1.01151 0.99777 1.03380 1.20607 0.93216 0.97609 0.96397 1.22157 0.90008 1.01188 0.94720 1.21587 1.01078 0.94889 0.96903 1.21460 0.95764 0.98107 0.96708 0.90783 1.21796 1.01718 1.01074 0.95494 0.92093 0.92185 0.91912 0.89118 0.88815 0.76646 0.90774 0.93400 0.90740 0.90772 0.87450 0.86707 0.91971 0.85674 0.87770 0.93576 0.90887 0.91178 0.91068 0.92589 0.92508 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.20 37.15 0.34 -0.79 16 2 C -0.15 -1.13 6.42 -27.89 -0.18 -1.31 16 3 C 0.51 5.71 7.80 -10.99 -0.09 5.62 16 4 O -0.54 -8.19 15.65 5.56 0.09 -8.11 16 5 N -0.73 -7.14 4.45 -53.73 -0.24 -7.38 16 6 C 0.15 1.75 2.04 -67.85 -0.14 1.61 16 7 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 8 C 0.05 0.62 4.13 -3.83 -0.02 0.60 16 9 N -0.53 -6.87 4.86 -236.11 -1.15 -8.01 16 10 C 0.11 1.51 5.55 -4.98 -0.03 1.49 16 11 C -0.22 -3.64 4.03 -104.57 -0.42 -4.06 16 12 C -0.06 -1.09 8.02 -39.61 -0.32 -1.40 16 13 C -0.19 -4.06 9.99 -39.39 -0.39 -4.45 16 14 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 15 O -0.18 -5.01 9.76 0.06 0.00 -5.01 16 16 C -0.39 -10.82 9.49 30.88 0.29 -10.53 16 17 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.99 13.67 55.48 0.76 -24.24 16 20 Si 0.94 20.22 29.55 -169.99 -5.02 15.19 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.24 -4.99 9.17 -39.40 -0.36 -5.35 16 25 C -0.06 -1.05 8.11 -39.61 -0.32 -1.37 16 26 C 0.05 0.57 4.82 -3.83 -0.02 0.55 16 27 C -0.11 -1.05 5.38 -26.65 -0.14 -1.19 16 28 C -0.10 -0.98 2.35 -90.50 -0.21 -1.20 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 C -0.14 -1.16 9.07 37.16 0.34 -0.82 16 31 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 3.04 8.53 -40.82 -0.35 2.69 16 37 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 38 H 0.05 0.72 6.48 -51.93 -0.34 0.39 16 39 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 40 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 41 H 0.11 1.69 8.03 -52.49 -0.42 1.27 16 42 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 43 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16 45 H 0.10 1.58 8.03 -52.48 -0.42 1.16 16 46 H 0.05 0.65 6.55 -51.93 -0.34 0.30 16 47 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 52 H 0.05 0.40 7.62 -51.93 -0.40 0.01 16 LS Contribution 410.59 15.07 6.19 6.19 Total: -1.00 -31.82 410.59 -10.08 -41.90 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -8.68 Total: 7.62 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -2.02 Total: -18.16 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: -0.63 Total: -39.63 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.82 -10.08 -41.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964528362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.427 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds