Wall clock time and date at job start Wed Apr 1 2020 04:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50700 * 109.47533 * 2 1 4 4 O 1.21273 * 120.00065 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99845 * 180.02562 * 3 2 1 6 6 C 1.46499 * 119.99799 * 180.02562 * 5 3 2 7 7 H 1.09001 * 109.50231 * 324.99458 * 6 5 3 8 8 C 1.53033 * 109.53890 * 85.09114 * 6 5 3 9 9 N 1.46852 * 109.52166 * 179.14127 * 8 6 5 10 10 C 1.46900 * 110.99862 * 174.16253 * 9 8 6 11 11 C 1.50701 * 109.47374 * 58.16286 * 10 9 8 12 12 C 1.38302 * 119.93027 * 269.72759 * 11 10 9 13 13 C 1.38107 * 120.06772 * 179.72288 * 12 11 10 14 14 C 1.38877 * 119.92595 * 0.56887 * 13 12 11 15 15 O 1.35754 * 120.06612 * 179.68224 * 14 13 12 16 16 C 1.34823 * 117.00339 * 174.48922 * 15 14 13 17 17 H 1.08001 * 119.99816 * 5.05277 * 16 15 14 18 18 C 1.38650 * 120.00419 * 185.05893 * 16 15 14 19 19 N 1.31559 * 119.99677 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00280 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47276 * 89.99417 * 20 18 16 22 22 H 1.48506 * 109.46911 * 209.99770 * 20 18 16 23 23 H 1.48496 * 109.46773 * 329.99319 * 20 18 16 24 24 C 1.38872 * 119.86773 * 359.70515 * 14 13 12 25 25 C 1.38100 * 119.92900 * 0.02562 * 24 14 13 26 26 C 1.46855 * 111.19856 * 298.25454 * 9 8 6 27 27 C 1.53043 * 109.51604 * 61.74399 * 26 9 8 28 28 C 1.53116 * 109.50216 * 204.91885 * 6 5 3 29 29 H 1.09004 * 109.52431 * 302.26385 * 28 6 5 30 30 C 1.53002 * 109.52685 * 62.38887 * 28 6 5 31 31 H 1.09006 * 109.47049 * 59.99727 * 1 2 3 32 32 H 1.08998 * 109.47826 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46843 * 300.00045 * 1 2 3 34 34 H 1.08999 * 109.46843 * 239.99955 * 2 1 3 35 35 H 1.09005 * 109.46948 * 120.00812 * 2 1 3 36 36 H 0.97001 * 120.00189 * 359.97438 * 5 3 2 37 37 H 1.08998 * 109.46440 * 299.15650 * 8 6 5 38 38 H 1.08998 * 109.46411 * 59.12682 * 8 6 5 39 39 H 1.09001 * 109.47245 * 178.16392 * 10 9 8 40 40 H 1.09000 * 109.47428 * 298.16376 * 10 9 8 41 41 H 1.07997 * 119.96384 * 359.97438 * 12 11 10 42 42 H 1.07994 * 120.03533 * 180.27183 * 13 12 11 43 43 H 0.97007 * 119.99934 * 179.97438 * 19 18 16 44 44 H 1.07999 * 120.03538 * 179.97438 * 24 14 13 45 45 H 1.08006 * 119.96662 * 180.02562 * 25 24 14 46 46 H 1.08994 * 109.46142 * 301.73230 * 26 9 8 47 47 H 1.08993 * 109.45187 * 181.75361 * 26 9 8 48 48 H 1.08998 * 109.49550 * 180.87590 * 27 26 9 49 49 H 1.08994 * 109.49979 * 60.76383 * 27 26 9 50 50 H 1.09004 * 109.46663 * 60.00455 * 30 28 6 51 51 H 1.08996 * 109.46889 * 179.97438 * 30 28 6 52 52 H 1.08992 * 109.47137 * 300.00564 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2444 2.3426 0.0005 5 7 3.3575 1.6669 -0.0005 6 6 3.8459 3.0481 0.0000 7 1 3.1734 3.6721 -0.5887 8 6 3.9009 3.5709 1.4372 9 7 4.4099 4.9484 1.4392 10 6 4.3465 5.5311 2.7861 11 6 5.1454 4.6805 3.7397 12 6 4.5328 3.6419 4.4170 13 6 5.2635 2.8570 5.2872 14 6 6.6121 3.1190 5.4907 15 8 7.3315 2.3533 6.3504 16 6 8.6576 2.5876 6.4159 17 1 9.0888 3.4089 5.8628 18 6 9.4679 1.7741 7.1931 19 7 8.9425 0.7738 7.8671 20 14 11.3051 2.0991 7.2844 21 1 11.5880 3.0305 8.4058 22 1 12.0236 0.8192 7.5106 23 1 11.7643 2.7058 6.0092 24 6 7.2230 4.1663 4.8135 25 6 6.4881 4.9440 3.9404 26 6 5.7756 5.0106 0.9028 27 6 5.7764 4.5306 -0.5505 28 6 5.2500 3.0940 -0.6088 29 1 5.9138 2.4397 -0.0434 30 6 5.1916 2.6281 -2.0650 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3635 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 1.8932 -0.5140 0.8900 36 1 3.9878 0.9296 -0.0005 37 1 2.9001 3.5530 1.8688 38 1 4.5627 2.9383 2.0288 39 1 4.7595 6.5397 2.7656 40 1 3.3085 5.5703 3.1166 41 1 3.4828 3.4419 4.2621 42 1 4.7856 2.0433 5.8124 43 1 9.5094 0.2044 8.4106 44 1 8.2714 4.3727 4.9701 45 1 6.9627 5.7584 3.4131 46 1 6.4285 4.3712 1.4968 47 1 6.1361 6.0382 0.9461 48 1 6.7926 4.5622 -0.9434 49 1 5.1344 5.1780 -1.1478 50 1 4.5295 3.2844 -2.6300 51 1 6.1915 2.6616 -2.4975 52 1 4.8119 1.6072 -2.1048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964528362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:54 Heat of formation + Delta-G solvation = -72.945028 kcal Electronic energy + Delta-G solvation = -31154.814075 eV Core-core repulsion = 27118.230073 eV Total energy + Delta-G solvation = -4036.584003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.47009 -40.81079 -39.79383 -38.29519 -36.18354 -34.57071 -34.22842 -33.62935 -31.96120 -31.44387 -30.59590 -28.86465 -27.42479 -25.91289 -25.36832 -23.96202 -23.22918 -22.86422 -21.93187 -21.33797 -20.52630 -19.88137 -18.83306 -18.03872 -17.48782 -16.80578 -16.58680 -16.45859 -16.24753 -15.96581 -15.85337 -15.52005 -15.39134 -15.19050 -14.97737 -14.61025 -14.49954 -14.29916 -14.27393 -14.08704 -13.61298 -13.41474 -13.29028 -13.12441 -13.06178 -12.89172 -12.62587 -12.54412 -12.43750 -12.42234 -12.31124 -12.14215 -12.11853 -12.01664 -11.70736 -11.53162 -11.36736 -11.20416 -10.81673 -10.77874 -10.07091 -9.81536 -9.33318 -8.94146 -8.49604 -6.18075 0.53291 0.61896 1.33610 1.42502 1.50971 1.68443 2.15499 2.20032 2.75650 3.06508 3.23075 3.46667 3.62252 3.81113 3.86373 3.92710 3.98038 4.05873 4.13905 4.20518 4.25835 4.28680 4.36275 4.45221 4.49336 4.53216 4.60605 4.69468 4.71966 4.74460 4.83855 4.86792 4.93617 4.96740 4.99997 5.04367 5.05688 5.07235 5.09566 5.12619 5.18428 5.24236 5.31574 5.33220 5.42908 5.50875 5.54466 5.66648 5.72191 5.99601 6.08447 6.15946 6.17982 6.59236 6.95018 7.30683 7.75086 8.73522 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.002703 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.811117 B =10356.338974 C =11036.370228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C 0.506 3.494 4 O -0.584 6.584 5 N -0.717 5.717 6 C 0.160 3.840 7 H 0.076 0.924 8 C 0.053 3.947 9 N -0.523 5.523 10 C 0.110 3.890 11 C -0.192 4.192 12 C -0.055 4.055 13 C -0.205 4.205 14 C 0.119 3.881 15 O -0.232 6.232 16 C -0.413 4.413 17 H 0.102 0.898 18 C -0.022 4.022 19 N -0.920 5.920 20 Si 1.018 2.982 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.252 1.252 24 C -0.241 4.241 25 C -0.052 4.052 26 C 0.045 3.955 27 C -0.103 4.103 28 C -0.096 4.096 29 H 0.068 0.932 30 C -0.138 4.138 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.412 0.588 37 H 0.056 0.944 38 H 0.029 0.971 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.130 0.870 42 H 0.108 0.892 43 H 0.273 0.727 44 H 0.119 0.881 45 H 0.139 0.861 46 H 0.026 0.974 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.053 0.947 51 H 0.068 0.932 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.937 3.023 -20.945 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.294 3.706 4 O -0.464 6.464 5 N -0.369 5.369 6 C 0.055 3.945 7 H 0.094 0.906 8 C -0.076 4.076 9 N -0.246 5.246 10 C -0.017 4.017 11 C -0.194 4.194 12 C -0.074 4.074 13 C -0.225 4.225 14 C 0.068 3.932 15 O -0.139 6.139 16 C -0.489 4.489 17 H 0.119 0.881 18 C -0.219 4.219 19 N -0.558 5.558 20 Si 0.837 3.163 21 H -0.189 1.189 22 H -0.195 1.195 23 H -0.175 1.175 24 C -0.260 4.260 25 C -0.071 4.071 26 C -0.082 4.082 27 C -0.141 4.141 28 C -0.116 4.116 29 H 0.087 0.913 30 C -0.195 4.195 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.249 0.751 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.148 0.852 42 H 0.126 0.874 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.157 0.843 46 H 0.045 0.955 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.093 0.907 50 H 0.072 0.928 51 H 0.087 0.913 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.817 3.623 -21.000 23.062 hybrid contribution 1.501 -0.990 1.435 2.300 sum -7.316 2.633 -19.564 21.053 Atomic orbital electron populations 1.21520 0.93587 1.02482 1.01823 1.21705 0.98164 0.91778 1.06375 1.21447 0.82001 0.92833 0.74306 1.90688 1.56320 1.48156 1.51249 1.46042 1.07259 1.08762 1.74805 1.20816 0.95844 0.82787 0.95062 0.90623 1.22316 0.99042 0.89420 0.96847 1.62374 1.22517 1.18419 1.21247 1.21070 0.99232 0.96838 0.84554 1.20403 0.95045 1.00722 1.03265 1.20778 0.98885 0.93854 0.93890 1.20385 0.91978 1.04508 1.05589 1.19873 0.92470 0.91172 0.89680 1.83944 1.21441 1.54688 1.53779 1.21804 0.80053 1.15963 1.31110 0.88108 1.26585 1.05702 0.94562 0.95086 1.70187 1.38419 1.17885 1.29352 0.84603 0.73535 0.78387 0.79807 1.18869 1.19544 1.17530 1.21249 1.01223 0.99655 1.03894 1.20930 0.93417 0.97558 0.95147 1.22261 0.88591 1.01783 0.95613 1.21595 1.02237 0.94738 0.95550 1.21426 0.94207 0.98230 0.97691 0.91309 1.21750 1.02449 1.01314 0.94023 0.93188 0.89853 0.93916 0.86236 0.87326 0.75134 0.92564 0.95289 0.88490 0.90125 0.85202 0.87386 0.91808 0.86321 0.84299 0.95540 0.89359 0.89449 0.90673 0.92824 0.91326 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.20 71.98 0.66 -1.46 16 2 C -0.14 -1.91 6.42 29.85 0.19 -1.71 16 3 C 0.51 10.83 7.80 87.66 0.68 11.52 16 4 O -0.58 -17.82 15.65 -3.01 -0.05 -17.87 16 5 N -0.72 -13.16 4.45 -442.31 -1.97 -15.13 16 6 C 0.16 3.42 2.04 45.04 0.09 3.52 16 7 H 0.08 1.94 7.58 -2.39 -0.02 1.93 16 8 C 0.05 1.36 4.13 86.32 0.36 1.71 16 9 N -0.52 -12.35 4.86 -900.91 -4.38 -16.73 16 10 C 0.11 2.69 5.55 85.56 0.48 3.16 16 11 C -0.19 -5.90 4.03 -19.83 -0.08 -5.98 16 12 C -0.06 -1.91 8.02 22.25 0.18 -1.73 16 13 C -0.21 -8.83 9.99 22.39 0.22 -8.61 16 14 C 0.12 5.87 6.65 22.57 0.15 6.02 16 15 O -0.23 -13.91 9.76 -22.72 -0.22 -14.13 16 16 C -0.41 -23.83 9.49 67.92 0.64 -23.18 16 17 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 18 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 19 N -0.92 -56.11 13.67 21.61 0.30 -55.82 16 20 Si 1.02 42.19 29.55 68.60 2.03 44.22 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 24 C -0.24 -10.26 9.17 22.39 0.21 -10.05 16 25 C -0.05 -1.72 8.11 22.25 0.18 -1.54 16 26 C 0.05 0.94 4.82 86.33 0.42 1.36 16 27 C -0.10 -1.73 5.38 30.65 0.16 -1.57 16 28 C -0.10 -1.66 2.35 -10.72 -0.03 -1.68 16 29 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 30 C -0.14 -1.85 9.07 71.98 0.65 -1.20 16 31 H 0.05 0.87 8.10 -2.38 -0.02 0.86 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.04 0.82 8.10 -2.39 -0.02 0.80 16 34 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.41 5.49 8.53 -92.71 -0.79 4.70 16 37 H 0.06 1.64 8.12 -2.39 -0.02 1.62 16 38 H 0.03 0.85 6.48 -2.39 -0.02 0.83 16 39 H 0.10 2.02 8.00 -2.39 -0.02 2.00 16 40 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 41 H 0.13 3.90 8.03 -2.91 -0.02 3.88 16 42 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 43 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 44 H 0.12 5.14 5.64 -2.91 -0.02 5.13 16 45 H 0.14 3.68 8.03 -2.91 -0.02 3.66 16 46 H 0.03 0.67 6.55 -2.39 -0.02 0.65 16 47 H 0.09 1.61 8.06 -2.39 -0.02 1.59 16 48 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 49 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 51 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.06 0.74 7.62 -2.39 -0.02 0.72 16 Total: -1.00 -74.99 410.59 1.47 -73.52 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.12 Total: 34.13 kcal Atomic # 6 Polarization: -37.83 SS G_CDS: 5.64 Total: -32.19 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -6.05 Total: -87.68 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.27 Total: -32.00 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -74.99 1.47 -73.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964528362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.576 kcal (2) G-P(sol) polarization free energy of solvation -74.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds