Wall clock time and date at job start Wed Apr 1 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47243 * 2 1 4 4 C 1.53003 * 109.47013 * 120.00204 * 2 1 3 5 5 O 1.42895 * 109.47121 * 64.99992 * 4 2 1 6 6 C 1.35713 * 116.99770 * 180.02562 * 5 4 2 7 7 C 1.38993 * 119.91254 * 179.97438 * 6 5 4 8 8 C 1.37701 * 120.09189 * 179.97438 * 7 6 5 9 9 C 1.39736 * 119.90780 * 359.97438 * 8 7 6 10 10 C 1.47610 * 120.08587 * 180.02562 * 9 8 7 11 11 O 1.21585 * 120.00067 * 24.56331 * 10 9 8 12 12 N 1.34772 * 119.99582 * 204.56024 * 10 9 8 13 13 C 1.47419 * 125.65488 * 5.46143 * 12 10 9 14 14 C 1.55131 * 104.72530 * 155.82021 * 13 12 10 15 15 C 1.55150 * 101.48540 * 37.29675 * 14 13 12 16 16 H 1.08998 * 110.72347 * 82.70058 * 15 14 13 17 17 N 1.46499 * 110.71867 * 205.97080 * 15 14 13 18 18 C 1.36937 * 120.00194 * 268.52295 * 17 15 14 19 19 H 1.07992 * 119.99685 * 359.97438 * 18 17 15 20 20 C 1.38816 * 120.00125 * 179.97438 * 18 17 15 21 21 N 1.31622 * 120.00025 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00049 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46711 * 89.99877 * 22 20 18 24 24 H 1.48492 * 109.47132 * 210.00299 * 22 20 18 25 25 H 1.48506 * 109.46816 * 330.00285 * 22 20 18 26 26 C 1.47029 * 125.64508 * 185.77072 * 12 10 9 27 27 H 1.08998 * 109.87871 * 300.59642 * 26 12 10 28 28 C 1.53003 * 109.88346 * 61.60442 * 26 12 10 29 29 C 1.39731 * 119.82485 * 359.97438 * 9 8 7 30 30 C 1.37697 * 119.91163 * 0.02562 * 29 9 8 31 31 H 1.08994 * 109.47215 * 59.99879 * 1 2 3 32 32 H 1.08995 * 109.47229 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46545 * 300.00152 * 1 2 3 34 34 H 1.08994 * 109.46774 * 239.99778 * 2 1 3 35 35 H 1.09001 * 109.47049 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46779 * 299.99917 * 3 2 1 37 37 H 1.08994 * 109.47417 * 60.00172 * 3 2 1 38 38 H 1.09002 * 109.47144 * 304.99473 * 4 2 1 39 39 H 1.09003 * 109.46812 * 184.99974 * 4 2 1 40 40 H 1.08006 * 119.95761 * 359.71633 * 7 6 5 41 41 H 1.08005 * 120.04843 * 179.97438 * 8 7 6 42 42 H 1.09005 * 110.36752 * 274.75237 * 13 12 10 43 43 H 1.09003 * 110.36752 * 37.06556 * 13 12 10 44 44 H 1.09003 * 111.18972 * 279.19091 * 14 13 12 45 45 H 1.08994 * 110.93897 * 155.29636 * 14 13 12 46 46 H 0.97006 * 120.00204 * 88.51842 * 17 15 14 47 47 H 0.96997 * 120.00095 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.47071 * 58.54067 * 28 26 12 49 49 H 1.08995 * 109.47071 * 178.54540 * 28 26 12 50 50 H 1.09001 * 109.47184 * 298.55290 * 28 26 12 51 51 H 1.08003 * 120.04118 * 180.02562 * 29 9 8 52 52 H 1.08004 * 119.95801 * 179.97438 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 -2.0982 1.1920 6 6 2.0391 -2.8844 2.2319 7 6 1.7030 -4.2330 2.2387 8 6 2.0843 -5.0343 3.2917 9 6 2.8105 -4.4898 4.3541 10 6 3.2217 -5.3452 5.4847 11 8 3.3442 -6.5445 5.3264 12 7 3.4614 -4.7968 6.6922 13 6 3.2437 -3.3841 7.0528 14 6 3.0559 -3.3947 8.5927 15 6 4.0724 -4.4860 9.0204 16 1 5.0769 -4.0694 9.0952 17 7 3.6695 -5.1017 10.2872 18 6 4.1298 -4.5934 11.4725 19 1 4.7902 -3.7389 11.4734 20 6 3.7476 -5.1765 12.6729 21 7 2.9431 -6.2183 12.6717 22 14 4.3761 -4.4836 14.2897 23 1 3.4362 -3.4443 14.7814 24 1 4.4748 -5.5756 15.2912 25 1 5.7169 -3.8800 14.0817 26 6 3.9893 -5.5071 7.8663 27 1 3.3198 -6.3233 8.1377 28 6 5.3829 -6.0582 7.5579 29 6 3.1474 -3.1338 4.3430 30 6 2.7624 -2.3393 3.2863 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9562 -0.8900 37 1 1.6768 1.9563 0.8899 38 1 1.6055 -0.2618 2.1370 39 1 3.1264 -0.6444 1.2951 40 1 1.1384 -4.6523 1.4190 41 1 1.8223 -6.0821 3.2965 42 1 4.1115 -2.7844 6.7783 43 1 2.3475 -3.0016 6.5644 44 1 2.0394 -3.6798 8.8637 45 1 3.3162 -2.4279 9.0235 46 1 3.0765 -5.8694 10.2864 47 1 2.6763 -6.6259 13.5104 48 1 6.0447 -5.2379 7.2797 49 1 5.7784 -6.5608 8.4405 50 1 5.3185 -6.7684 6.7335 51 1 3.7090 -2.7094 5.1621 52 1 3.0220 -1.2909 3.2771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987461663.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:23 Heat of formation + Delta-G solvation = -36.927539 kcal Electronic energy + Delta-G solvation = -30116.026118 eV Core-core repulsion = 26081.003950 eV Total energy + Delta-G solvation = -4035.022167 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.76040 -39.88726 -37.99151 -37.09607 -35.62967 -34.18766 -32.09085 -31.18675 -30.93828 -30.21148 -28.89684 -27.66112 -27.08381 -25.33012 -23.91275 -23.41664 -22.65497 -21.89345 -20.70379 -20.18788 -19.23722 -18.41583 -17.29370 -17.14490 -16.71004 -16.25783 -16.05112 -15.13314 -14.88903 -14.81600 -14.71732 -14.37479 -14.05373 -13.78671 -13.63991 -13.55632 -13.39160 -13.17243 -12.98377 -12.83278 -12.70875 -12.57419 -12.41046 -12.12426 -11.92047 -11.68348 -11.61908 -11.59251 -11.32993 -11.16810 -11.05367 -11.04419 -10.93846 -10.79156 -10.56699 -10.26350 -10.04713 -9.79048 -9.63076 -9.29114 -8.95795 -8.53847 -8.32103 -7.04836 -5.82862 -3.13462 0.82155 1.11183 2.75856 2.87546 3.14800 3.39908 3.45217 3.47146 3.71025 4.21744 4.29305 4.49097 4.53548 4.53593 4.56866 4.60810 4.84135 4.91105 4.96607 5.03074 5.09612 5.15324 5.19199 5.21805 5.32156 5.34861 5.38652 5.42064 5.44985 5.54647 5.55916 5.64409 5.73376 5.74462 5.79268 5.82565 5.88811 5.95771 6.02743 6.07983 6.12044 6.21612 6.28193 6.42924 6.44809 6.57017 6.60666 6.75719 6.90335 7.05932 7.63978 7.75923 8.33538 8.36364 9.45774 10.00275 10.34985 11.39179 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.001993 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.360517 B =14048.730623 C =15063.787651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.147 4.147 4 C 0.061 3.939 5 O -0.311 6.311 6 C 0.150 3.850 7 C -0.162 4.162 8 C -0.023 4.023 9 C -0.164 4.164 10 C 0.573 3.427 11 O -0.542 6.542 12 N -0.604 5.604 13 C 0.094 3.906 14 C -0.157 4.157 15 C 0.177 3.823 16 H 0.068 0.932 17 N -0.714 5.714 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.010 4.010 21 N -0.929 5.929 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.126 3.874 27 H 0.079 0.921 28 C -0.154 4.154 29 C -0.055 4.055 30 C -0.219 4.219 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.386 0.614 47 H 0.257 0.743 48 H 0.050 0.950 49 H 0.071 0.929 50 H 0.059 0.941 51 H 0.143 0.857 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 14.005 -26.156 29.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.015 4.015 5 O -0.224 6.224 6 C 0.104 3.896 7 C -0.180 4.180 8 C -0.042 4.042 9 C -0.167 4.167 10 C 0.363 3.637 11 O -0.420 6.420 12 N -0.337 5.337 13 C -0.029 4.029 14 C -0.199 4.199 15 C 0.065 3.935 16 H 0.086 0.914 17 N -0.354 5.354 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.576 5.576 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.022 3.978 27 H 0.097 0.903 28 C -0.212 4.212 29 C -0.073 4.073 30 C -0.237 4.237 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.153 0.847 41 H 0.158 0.842 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.221 0.779 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.090 0.910 50 H 0.078 0.922 51 H 0.160 0.840 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.028 13.350 -26.295 29.559 hybrid contribution 0.181 0.406 1.092 1.179 sum -1.847 13.756 -25.202 28.771 Atomic orbital electron populations 1.21831 0.94232 1.02630 1.01849 1.21133 0.97074 0.95849 0.97290 1.21790 1.01281 0.94714 1.02646 1.22982 0.99717 0.79311 0.99445 1.86011 1.73957 1.21047 1.41388 1.19243 0.92855 0.90818 0.86647 1.20360 1.05923 0.90788 1.00975 1.21057 0.92676 0.99985 0.90460 1.19859 1.05525 0.94192 0.97120 1.17819 0.77413 0.87119 0.81380 1.90765 1.53158 1.14759 1.83363 1.48439 1.63680 1.11085 1.10523 1.22691 1.00080 0.82420 0.97674 1.23659 1.02705 1.01919 0.91593 1.21239 0.96272 0.90516 0.85481 0.91425 1.42350 1.57140 1.36379 0.99490 1.19207 1.23737 1.10694 0.83912 0.90983 1.24777 1.00028 0.98052 0.97816 1.69666 1.38299 1.23724 1.25954 0.86177 0.78302 0.77843 0.83747 1.21678 1.21741 1.20702 1.21984 0.95193 0.95959 0.84667 0.90306 1.22039 0.95730 1.00976 1.02445 1.21671 0.95905 0.92271 0.97460 1.21177 1.05558 1.00986 0.96026 0.92437 0.91802 0.92613 0.90043 0.92275 0.91643 0.92207 0.91678 0.91793 0.84654 0.84174 0.91556 0.90886 0.90536 0.90511 0.77938 0.93357 0.93113 0.90984 0.92183 0.83962 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.09 37.16 0.34 -0.49 16 2 C -0.09 -0.51 3.16 -90.62 -0.29 -0.80 16 3 C -0.15 -0.58 9.19 37.16 0.34 -0.24 16 4 C 0.06 0.39 4.11 37.16 0.15 0.55 16 5 O -0.31 -2.87 9.66 -18.84 -0.18 -3.05 16 6 C 0.15 1.54 6.70 -39.02 -0.26 1.27 16 7 C -0.16 -1.70 9.97 -39.50 -0.39 -2.10 16 8 C -0.02 -0.28 9.58 -39.22 -0.38 -0.65 16 9 C -0.16 -2.19 5.67 -104.96 -0.60 -2.78 16 10 C 0.57 9.44 7.38 -12.44 -0.09 9.35 16 11 O -0.54 -10.64 15.86 5.29 0.08 -10.56 16 12 N -0.60 -9.56 3.06 -164.06 -0.50 -10.06 16 13 C 0.09 1.23 5.00 -2.41 -0.01 1.22 16 14 C -0.16 -2.53 6.78 -24.47 -0.17 -2.69 16 15 C 0.18 3.34 3.14 -66.10 -0.21 3.14 16 16 H 0.07 1.27 7.80 -51.93 -0.41 0.86 16 17 N -0.71 -17.18 5.22 -51.66 -0.27 -17.45 16 18 C -0.24 -6.50 9.96 -15.06 -0.15 -6.65 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 22 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.13 2.25 3.18 -66.95 -0.21 2.04 16 27 H 0.08 1.60 7.72 -51.93 -0.40 1.20 16 28 C -0.15 -2.60 9.11 37.16 0.34 -2.26 16 29 C -0.05 -0.60 8.06 -39.22 -0.32 -0.92 16 30 C -0.22 -2.09 9.01 -39.50 -0.36 -2.45 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.43 7.82 -51.93 -0.41 0.02 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 39 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 40 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 41 H 0.14 1.66 7.84 -52.48 -0.41 1.25 16 42 H 0.07 0.72 6.83 -51.93 -0.35 0.37 16 43 H 0.07 0.85 6.81 -51.93 -0.35 0.50 16 44 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.39 10.10 7.57 -40.82 -0.31 9.79 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 50 H 0.06 1.05 7.08 -51.93 -0.37 0.68 16 51 H 0.14 1.38 4.58 -52.48 -0.24 1.14 16 52 H 0.13 0.94 6.28 -52.48 -0.33 0.61 16 LS Contribution 413.57 15.07 6.23 6.23 Total: -1.00 -31.62 413.57 -9.86 -41.48 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -8.57 Total: 8.26 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.35 Total: -4.84 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.05 Total: -54.32 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.10 Total: -13.61 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.62 -9.86 -41.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987461663.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.551 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds