Wall clock time and date at job start Wed Apr 1 2020 04:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46982 * 2 1 4 4 C 1.53005 * 109.47175 * 119.99855 * 2 1 3 5 5 C 1.50693 * 109.47396 * 239.99776 * 2 1 3 6 6 O 1.21286 * 119.99909 * 0.02562 * 5 2 1 7 7 N 1.34782 * 120.00346 * 179.97438 * 5 2 1 8 8 C 1.46498 * 120.00005 * 179.97438 * 7 5 2 9 9 H 1.08997 * 112.85350 * 334.67081 * 8 7 5 10 10 C 1.53775 * 113.61019 * 105.87155 * 8 7 5 11 11 C 1.54049 * 86.98703 * 89.16169 * 10 8 7 12 12 H 1.09001 * 113.68979 * 270.86920 * 11 10 8 13 13 N 1.46902 * 113.62359 * 139.97722 * 11 10 8 14 14 C 1.46900 * 111.00004 * 107.50100 * 13 11 10 15 15 C 1.50696 * 109.47016 * 180.02562 * 14 13 11 16 16 C 1.38303 * 119.93095 * 269.72845 * 15 14 13 17 17 C 1.38101 * 120.06672 * 179.72699 * 16 15 14 18 18 C 1.38882 * 119.92929 * 0.52276 * 17 16 15 19 19 O 1.35759 * 120.06606 * 179.72414 * 18 17 16 20 20 C 1.34834 * 116.99317 * 174.48726 * 19 18 17 21 21 H 1.07993 * 120.00696 * 5.06394 * 20 19 18 22 22 C 1.38655 * 119.99406 * 185.05787 * 20 19 18 23 23 N 1.31557 * 120.00166 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99804 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46967 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47089 * 120.00515 * 24 22 20 27 27 H 1.48495 * 109.46758 * 240.00014 * 24 22 20 28 28 C 1.38877 * 119.86389 * 359.75514 * 18 17 16 29 29 C 1.38095 * 119.92923 * 359.97438 * 28 18 17 30 30 C 1.53774 * 87.07749 * 25.42858 * 11 10 8 31 31 H 1.08999 * 109.47095 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47605 * 60.00197 * 1 2 3 33 33 H 1.09001 * 109.47423 * 300.00196 * 1 2 3 34 34 H 1.09005 * 109.47123 * 60.00148 * 3 2 1 35 35 H 1.09000 * 109.47412 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47286 * 299.99749 * 3 2 1 37 37 H 1.08999 * 109.46862 * 60.00405 * 4 2 1 38 38 H 1.08996 * 109.46898 * 180.02562 * 4 2 1 39 39 H 1.09001 * 109.46904 * 300.00267 * 4 2 1 40 40 H 0.96999 * 119.99691 * 0.02562 * 7 5 2 41 41 H 1.09004 * 113.61616 * 203.65964 * 10 8 7 42 42 H 1.08998 * 113.62089 * 334.56704 * 10 8 7 43 43 H 1.00895 * 110.99986 * 231.46152 * 13 11 10 44 44 H 1.08997 * 109.47482 * 300.00829 * 14 13 11 45 45 H 1.08999 * 109.46760 * 60.00519 * 14 13 11 46 46 H 1.07993 * 119.96589 * 359.97438 * 16 15 14 47 47 H 1.08006 * 120.03780 * 180.27334 * 17 16 15 48 48 H 0.96999 * 120.00033 * 179.97438 * 23 22 20 49 49 H 1.08000 * 120.03122 * 179.97438 * 28 18 17 50 50 H 1.08000 * 119.96544 * 180.02562 * 29 28 18 51 51 H 1.09000 * 113.61909 * 220.02227 * 30 11 10 52 52 H 1.09005 * 113.68829 * 89.13375 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0323 -0.7104 -1.2304 6 8 1.2442 -1.1710 -2.0290 7 7 3.3574 -0.8331 -1.4439 8 6 3.8457 -1.5243 -2.6398 9 1 3.1311 -2.2478 -3.0320 10 6 4.4137 -0.5771 -3.7098 11 6 5.7744 -0.7260 -3.0031 12 1 5.9397 0.0060 -2.2126 13 7 6.9100 -0.8320 -3.9289 14 6 7.7094 0.4005 -3.9247 15 6 8.8621 0.2547 -4.8844 16 6 10.0706 -0.2500 -4.4398 17 6 11.1271 -0.3900 -5.3181 18 6 10.9784 -0.0132 -6.6465 19 8 12.0169 -0.1444 -7.5110 20 6 11.7722 0.1316 -8.8079 21 1 10.8090 0.5192 -9.1052 22 6 12.7573 -0.0821 -9.7600 23 7 13.9305 -0.5547 -9.3979 24 14 12.4186 0.3009 -11.5567 25 1 11.0340 0.8179 -11.7000 26 1 13.3812 1.3259 -12.0342 27 1 12.5718 -0.9361 -12.3638 28 6 9.7654 0.4987 -7.0885 29 6 8.7110 0.6310 -6.2066 30 6 5.2699 -2.0846 -2.4890 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 0.5139 0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6767 -1.7489 1.2492 38 1 3.1299 -0.7208 1.2495 39 1 1.6766 -0.2074 2.1392 40 1 3.9877 -0.4644 -0.8054 41 1 4.3965 -0.9950 -4.7164 42 1 4.0035 0.4317 -3.6622 43 1 7.4813 -1.6343 -3.7100 44 1 7.0852 1.2395 -4.2319 45 1 8.0928 0.5814 -2.9206 46 1 10.1869 -0.5387 -3.4057 47 1 12.0692 -0.7884 -4.9714 48 1 14.6195 -0.7045 -10.0640 49 1 9.6470 0.7930 -8.1209 50 1 7.7674 1.0286 -6.5498 51 1 5.5503 -2.2923 -1.4563 52 1 5.4858 -2.9149 -3.1613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020961663.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:04 Heat of formation + Delta-G solvation = -31.839055 kcal Electronic energy + Delta-G solvation = -29117.536636 eV Core-core repulsion = 25082.735122 eV Total energy + Delta-G solvation = -4034.801514 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.83835 -39.25661 -38.87266 -36.84863 -35.99550 -34.68164 -32.80524 -32.16908 -30.17795 -29.22920 -27.88365 -27.60050 -26.02946 -25.72214 -24.88309 -23.69213 -22.60595 -21.96347 -20.47921 -19.86091 -19.53812 -17.98505 -17.21337 -16.95938 -16.56872 -15.98549 -15.45161 -15.36479 -15.03473 -14.67239 -14.49281 -14.35188 -14.27037 -14.09651 -13.89049 -13.60858 -13.33381 -12.88243 -12.82355 -12.78853 -12.68208 -12.64966 -12.50917 -12.30388 -12.21233 -12.17331 -11.74185 -11.57034 -11.45493 -11.43342 -11.27382 -10.99058 -10.86342 -10.71584 -10.59948 -10.43397 -10.34523 -9.99235 -9.34811 -9.32784 -8.84358 -8.40670 -8.17374 -7.19060 -6.45687 -4.04384 2.21409 2.28419 2.29957 2.75672 3.12174 3.14160 3.19630 3.96528 4.11792 4.20031 4.21706 4.25989 4.30053 4.38376 4.64485 4.70008 4.72819 4.83561 5.01849 5.09238 5.09983 5.19250 5.23880 5.27252 5.31202 5.36482 5.39230 5.39417 5.41590 5.46887 5.55966 5.59896 5.69720 5.71359 5.74942 5.79893 5.81299 5.84571 5.90343 5.94358 6.20874 6.30113 6.42722 6.69514 6.90420 7.02078 7.12242 7.14513 7.20382 7.38623 7.42867 7.46800 7.82546 7.89471 7.99711 9.00293 9.70129 10.72386 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.026615 B = 0.001518 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.778190 B =18442.083468 C =18842.650491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.524 3.476 6 O -0.537 6.537 7 N -0.711 5.711 8 C 0.117 3.883 9 H 0.103 0.897 10 C -0.135 4.135 11 C 0.060 3.940 12 H 0.068 0.932 13 N -0.672 5.672 14 C 0.119 3.881 15 C -0.186 4.186 16 C -0.069 4.069 17 C -0.194 4.194 18 C 0.156 3.844 19 O -0.179 6.179 20 C -0.391 4.391 21 H 0.093 0.907 22 C 0.039 3.961 23 N -0.863 5.863 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.235 4.235 29 C -0.048 4.048 30 C -0.148 4.148 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.399 0.601 41 H 0.099 0.901 42 H 0.065 0.935 43 H 0.343 0.657 44 H 0.069 0.931 45 H 0.027 0.973 46 H 0.106 0.894 47 H 0.115 0.885 48 H 0.269 0.731 49 H 0.126 0.874 50 H 0.107 0.893 51 H 0.070 0.930 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.908 1.159 21.045 30.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.199 4.199 4 C -0.198 4.198 5 C 0.311 3.689 6 O -0.412 6.412 7 N -0.362 5.362 8 C 0.012 3.988 9 H 0.121 0.879 10 C -0.174 4.174 11 C -0.051 4.051 12 H 0.085 0.915 13 N -0.303 5.303 14 C -0.010 4.010 15 C -0.187 4.187 16 C -0.088 4.088 17 C -0.213 4.213 18 C 0.102 3.898 19 O -0.082 6.082 20 C -0.468 4.468 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.498 5.498 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.201 1.201 28 C -0.254 4.254 29 C -0.067 4.067 30 C -0.187 4.187 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.233 0.767 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.163 0.837 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.124 0.876 47 H 0.134 0.866 48 H 0.079 0.921 49 H 0.144 0.856 50 H 0.125 0.875 51 H 0.089 0.911 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -22.379 0.880 19.823 29.909 hybrid contribution 0.733 0.341 0.171 0.827 sum -21.646 1.220 19.995 29.493 Atomic orbital electron populations 1.21663 0.91834 1.02911 1.02152 1.20834 0.98200 0.96458 0.93555 1.21877 1.01184 0.93707 1.03104 1.21873 1.01146 1.00706 0.96096 1.20600 0.82055 0.79140 0.87137 1.90706 1.55279 1.48216 1.47036 1.45728 1.07073 1.58608 1.24812 1.21765 0.95394 0.95526 0.86163 0.87883 1.23567 0.94766 0.99857 0.99229 1.23122 0.91924 0.96411 0.93629 0.91467 1.60685 1.11738 1.05634 1.52250 1.20660 0.92346 0.92101 0.95843 1.19109 0.94552 1.10220 0.94862 1.20466 0.92441 0.98161 0.97720 1.20167 0.99994 1.09384 0.91783 1.19403 0.87612 0.92207 0.90601 1.83979 1.30784 1.75558 1.17868 1.21387 1.01252 1.44370 0.79742 0.88974 1.25292 0.94771 0.96457 1.00000 1.70047 1.03672 1.41354 1.34691 0.85646 0.78790 0.78382 0.80618 1.19073 1.20160 1.20122 1.21174 0.94108 1.09251 1.00910 1.20573 0.97026 0.96776 0.92356 1.23598 0.94903 0.98247 1.01944 0.91904 0.91849 0.91976 0.91219 0.92150 0.91886 0.91961 0.92173 0.91226 0.76662 0.88231 0.91640 0.83730 0.91284 0.95524 0.87554 0.86645 0.92082 0.85600 0.87519 0.91146 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 7.76 37.15 0.29 -0.56 16 2 C -0.09 -0.54 0.87 -155.66 -0.14 -0.67 16 3 C -0.14 -0.68 8.37 37.16 0.31 -0.36 16 4 C -0.14 -0.62 8.37 37.16 0.31 -0.31 16 5 C 0.52 4.78 6.48 -10.99 -0.07 4.71 16 6 O -0.54 -7.13 15.60 5.55 0.09 -7.05 16 7 N -0.71 -5.17 5.05 -53.02 -0.27 -5.44 16 8 C 0.12 0.99 4.29 -67.12 -0.29 0.71 16 9 H 0.10 1.05 7.50 -51.93 -0.39 0.66 16 10 C -0.13 -1.27 7.70 -25.78 -0.20 -1.47 16 11 C 0.06 0.52 4.03 -66.76 -0.27 0.25 16 12 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 13 N -0.67 -7.66 6.55 -106.99 -0.70 -8.36 16 14 C 0.12 1.51 5.65 -4.98 -0.03 1.48 16 15 C -0.19 -3.06 5.40 -104.58 -0.56 -3.63 16 16 C -0.07 -1.19 9.69 -39.61 -0.38 -1.57 16 17 C -0.19 -4.04 9.99 -39.39 -0.39 -4.43 16 18 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 19 O -0.18 -5.10 9.76 0.01 0.00 -5.10 16 20 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 21 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 24 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 28 C -0.24 -5.12 9.17 -39.40 -0.36 -5.48 16 29 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 30 C -0.15 -1.09 7.39 -25.92 -0.19 -1.29 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.24 7.56 -51.93 -0.39 -0.16 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.21 7.57 -51.93 -0.39 -0.19 16 39 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.40 2.00 7.54 -40.82 -0.31 1.70 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.34 3.86 8.54 -39.29 -0.34 3.53 16 44 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 45 H 0.03 0.31 8.07 -51.93 -0.42 -0.11 16 46 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 47 H 0.12 2.33 8.06 -52.48 -0.42 1.90 16 48 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 50 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 51 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 52 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 423.53 15.07 6.38 6.38 Total: -1.00 -32.46 423.53 -9.87 -42.33 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -8.68 Total: 6.30 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -2.42 Total: -20.09 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: -0.21 Total: -38.32 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -32.46 -9.87 -42.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020961663.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.493 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds