Wall clock time and date at job start Wed Apr 1 2020 05:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35908 * 116.99692 * 2 1 4 4 C 1.38750 * 120.05891 * 0.25301 * 3 2 1 5 5 C 1.38123 * 119.94287 * 180.31916 * 4 3 2 6 6 C 1.38287 * 120.05749 * 359.67969 * 5 4 3 7 7 C 1.38240 * 120.11086 * 0.02562 * 6 5 4 8 8 C 1.38170 * 120.05749 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.03167 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47158 * 265.00528 * 9 8 7 11 11 O 1.21279 * 120.00001 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99525 * 180.02562 * 10 9 8 13 13 C 1.46921 * 120.63610 * 359.97365 * 12 10 9 14 14 C 1.53187 * 108.77794 * 126.41490 * 13 12 10 15 15 C 1.53043 * 109.31314 * 54.63631 * 14 13 12 16 16 H 1.09002 * 109.46131 * 178.61580 * 15 14 13 17 17 C 1.53001 * 109.44748 * 58.64645 * 15 14 13 18 18 C 1.53046 * 109.53475 * 298.63574 * 15 14 13 19 19 H 1.08994 * 109.49602 * 301.37632 * 18 15 14 20 20 C 1.53005 * 109.49407 * 181.31396 * 18 15 14 21 21 N 1.46497 * 109.46686 * 174.99639 * 20 18 15 22 22 C 1.36941 * 119.99619 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00239 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.99827 * 180.02562 * 22 21 20 25 25 N 1.31615 * 119.99944 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99869 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47153 * 60.00282 * 26 24 22 28 28 H 1.48502 * 109.47009 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.46997 * 299.99927 * 26 24 22 30 30 C 1.46931 * 120.62658 * 180.02562 * 12 10 9 31 31 H 1.09000 * 109.47041 * 300.00101 * 1 2 3 32 32 H 1.08999 * 109.47170 * 59.99785 * 1 2 3 33 33 H 1.08998 * 109.47260 * 180.02562 * 1 2 3 34 34 H 1.08002 * 120.02642 * 0.02562 * 4 3 2 35 35 H 1.07998 * 119.96748 * 179.70105 * 5 4 3 36 36 H 1.07999 * 119.94006 * 180.02562 * 6 5 4 37 37 H 1.07996 * 119.97628 * 180.02562 * 7 6 5 38 38 H 1.09002 * 109.47332 * 145.00098 * 9 8 7 39 39 H 1.09002 * 109.46981 * 25.00189 * 9 8 7 40 40 H 1.09007 * 109.58417 * 246.20425 * 13 12 10 41 41 H 1.08998 * 109.58638 * 6.47942 * 13 12 10 42 42 H 1.08992 * 109.50154 * 294.68300 * 14 13 12 43 43 H 1.09007 * 109.50033 * 174.58328 * 14 13 12 44 44 H 1.08992 * 109.47480 * 299.96774 * 17 15 14 45 45 H 1.08996 * 109.47171 * 59.97125 * 17 15 14 46 46 H 1.09008 * 109.46811 * 179.97438 * 17 15 14 47 47 H 1.08996 * 109.47305 * 294.99975 * 20 18 15 48 48 H 1.09008 * 109.47037 * 55.00272 * 20 18 15 49 49 H 0.96997 * 120.00098 * 0.02562 * 21 20 18 50 50 H 0.97000 * 119.99925 * 180.02562 * 25 24 22 51 51 H 1.08997 * 109.58885 * 113.79657 * 30 12 10 52 52 H 1.09000 * 109.70405 * 353.43740 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3754 0.0053 5 6 1.9208 3.6048 -0.0014 6 6 3.3019 3.6759 -0.0066 7 6 4.0559 2.5172 -0.0058 8 6 3.4311 1.2849 -0.0002 9 6 4.2537 0.0222 0.0002 10 6 4.4190 -0.4700 -1.4145 11 8 3.9178 0.1438 -2.3326 12 7 5.1230 -1.5929 -1.6593 13 6 5.7356 -2.3476 -0.5576 14 6 5.2772 -3.8067 -0.6446 15 6 5.5975 -4.3556 -2.0369 16 1 5.2947 -5.4012 -2.0935 17 6 7.1017 -4.2459 -2.2941 18 6 4.8395 -3.5473 -3.0925 19 1 3.7690 -3.6051 -2.8955 20 6 5.1346 -4.1175 -4.4813 21 7 4.3177 -3.4215 -5.4786 22 6 4.4120 -3.7646 -6.8009 23 1 5.0882 -4.5485 -7.1086 24 6 3.6384 -3.1047 -7.7460 25 7 2.8147 -2.1491 -7.3711 26 14 3.7675 -3.5722 -9.5500 27 1 3.3989 -5.0008 -9.7187 28 1 2.8453 -2.7249 -10.3481 29 1 5.1613 -3.3621 -10.0172 30 6 5.2934 -2.0850 -3.0332 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 0.2128 2.3204 0.0099 35 1 1.3339 4.5114 -0.0021 36 1 3.7920 4.6382 -0.0114 37 1 5.1343 2.5753 -0.0095 38 1 3.7488 -0.7402 0.5935 39 1 5.2340 0.2274 0.4304 40 1 6.8214 -2.3000 -0.6414 41 1 5.4237 -1.9206 0.3956 42 1 4.2028 -3.8615 -0.4703 43 1 5.7991 -4.3976 0.1082 44 1 7.4048 -3.2005 -2.2375 45 1 7.6418 -4.8219 -1.5427 46 1 7.3303 -4.6372 -3.2855 47 1 6.1901 -3.9779 -4.7146 48 1 4.8969 -5.1813 -4.4954 49 1 3.7102 -2.7178 -5.2022 50 1 2.2739 -1.6883 -8.0314 51 1 6.3431 -2.0161 -3.3185 52 1 4.6893 -1.4868 -3.7154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133299426.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:26 Heat of formation + Delta-G solvation = -38.876647 kcal Electronic energy + Delta-G solvation = -31465.977093 eV Core-core repulsion = 27430.870406 eV Total energy + Delta-G solvation = -4035.106687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.61256 -39.87620 -37.98436 -37.30818 -34.85573 -33.43922 -32.93538 -31.76397 -30.19787 -29.81796 -28.34025 -27.47472 -27.07340 -25.22084 -24.49153 -23.08843 -22.20860 -21.83588 -21.10920 -19.55427 -18.15596 -17.90393 -17.17772 -16.79196 -16.41630 -16.02045 -15.71540 -15.33684 -15.04290 -14.90024 -14.82539 -14.51243 -14.23686 -13.85727 -13.54601 -13.45589 -13.24478 -13.10816 -12.91781 -12.69554 -12.50803 -12.35385 -12.12722 -12.04885 -11.83270 -11.56966 -11.40154 -11.18979 -11.16989 -10.99448 -10.92109 -10.81468 -10.72694 -10.53444 -10.24364 -10.09625 -9.89684 -9.57821 -9.47808 -8.88710 -8.78166 -8.29291 -8.17548 -6.82025 -5.65493 -2.95126 1.23984 1.41450 2.93356 3.21336 3.22902 3.49899 3.53654 3.55466 3.74968 4.56771 4.64500 4.70265 4.74489 4.79492 4.88307 4.92725 4.99061 5.03189 5.09823 5.15216 5.23137 5.27642 5.34248 5.36037 5.41627 5.44874 5.47403 5.63093 5.63434 5.68168 5.73602 5.76701 5.88061 5.94813 5.98422 6.04459 6.08412 6.24789 6.25037 6.34001 6.39648 6.42088 6.44802 6.45978 6.67559 6.71455 6.79079 6.86635 6.97885 7.33076 7.67985 7.77457 8.50451 8.52180 9.62915 10.21979 10.56139 11.56720 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.009413 B = 0.003185 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.037579 B = 8788.366860 C =10543.345783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.146 3.854 4 C -0.209 4.209 5 C -0.082 4.082 6 C -0.159 4.159 7 C -0.070 4.070 8 C -0.097 4.097 9 C -0.091 4.091 10 C 0.514 3.486 11 O -0.522 6.522 12 N -0.613 5.613 13 C 0.106 3.894 14 C -0.129 4.129 15 C -0.084 4.084 16 H 0.072 0.928 17 C -0.152 4.152 18 C -0.101 4.101 19 H 0.072 0.928 20 C 0.161 3.839 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.121 3.879 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.022 0.978 48 H 0.019 0.981 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.065 0.935 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.589 5.237 24.363 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.100 3.900 4 C -0.228 4.228 5 C -0.100 4.100 6 C -0.177 4.177 7 C -0.088 4.088 8 C -0.098 4.098 9 C -0.130 4.130 10 C 0.302 3.698 11 O -0.397 6.397 12 N -0.347 5.347 13 C -0.017 4.017 14 C -0.167 4.167 15 C -0.103 4.103 16 H 0.090 0.910 17 C -0.209 4.209 18 C -0.121 4.121 19 H 0.091 0.909 20 C 0.033 3.967 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.213 1.213 30 C 0.000 4.000 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.040 0.960 48 H 0.037 0.963 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.083 0.917 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.431 5.313 23.698 24.408 hybrid contribution -0.474 0.027 -1.004 1.111 sum 1.957 5.340 22.694 23.396 Atomic orbital electron populations 1.23052 0.78371 1.04045 1.01184 1.86073 1.21370 1.26756 1.88289 1.18779 0.91669 0.84347 0.95195 1.21183 0.99941 0.92387 1.09274 1.20898 0.94704 0.96846 0.97533 1.20969 0.93923 0.98213 1.04577 1.20820 0.99726 0.91056 0.97209 1.18651 0.90289 0.94670 1.06207 1.20497 1.00741 0.96163 0.95645 1.20445 0.78045 0.80428 0.90922 1.90771 1.46796 1.56009 1.46099 1.48153 1.53205 1.25216 1.08174 1.21739 0.97954 0.92187 0.89826 1.21937 1.01804 0.95344 0.97624 1.21065 0.95804 0.99616 0.93852 0.90966 1.21983 0.95241 1.01807 1.01914 1.21684 1.00168 0.94316 0.95938 0.90930 1.20678 0.94691 0.94798 0.86557 1.42421 1.48740 1.43522 1.03073 1.19158 1.19193 1.15251 0.83701 0.91339 1.24748 0.99406 0.98804 0.97917 1.69670 1.28804 1.26267 1.33030 0.86297 0.77175 0.77470 0.85403 1.21359 1.21728 1.21316 1.21692 1.01584 0.94830 0.81921 0.92902 0.92435 0.88218 0.85557 0.85981 0.85974 0.85589 0.87958 0.88471 0.91265 0.90259 0.91492 0.90994 0.92424 0.93214 0.91853 0.96021 0.96299 0.78094 0.93486 0.91664 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.27 9.64 -19.45 -0.19 -4.46 16 3 C 0.15 2.01 6.66 -39.22 -0.26 1.75 16 4 C -0.21 -2.51 9.04 -39.43 -0.36 -2.86 16 5 C -0.08 -0.89 10.04 -39.61 -0.40 -1.29 16 6 C -0.16 -1.74 10.04 -39.56 -0.40 -2.13 16 7 C -0.07 -0.83 9.68 -39.61 -0.38 -1.21 16 8 C -0.10 -1.30 4.39 -104.47 -0.46 -1.76 16 9 C -0.09 -1.09 3.90 -29.04 -0.11 -1.20 16 10 C 0.51 8.38 7.69 -10.99 -0.08 8.29 16 11 O -0.52 -11.24 15.45 5.56 0.09 -11.15 16 12 N -0.61 -8.98 2.97 -172.75 -0.51 -9.50 16 13 C 0.11 1.09 5.87 -3.72 -0.02 1.06 16 14 C -0.13 -1.32 5.62 -26.61 -0.15 -1.47 16 15 C -0.08 -1.07 2.71 -90.57 -0.25 -1.31 16 16 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.15 -1.76 8.11 37.16 0.30 -1.46 16 18 C -0.10 -1.72 2.15 -90.47 -0.19 -1.92 16 19 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 20 C 0.16 3.32 5.18 -4.04 -0.02 3.30 16 21 N -0.73 -19.44 5.38 -59.91 -0.32 -19.76 16 22 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -29.56 13.06 55.49 0.72 -28.83 16 26 Si 0.91 23.19 29.55 -169.99 -5.02 18.16 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 C 0.12 2.14 5.05 -3.69 -0.02 2.12 16 31 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 32 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.10 1.10 7.25 -51.93 -0.38 0.73 16 39 H 0.10 0.86 7.85 -51.93 -0.41 0.45 16 40 H 0.07 0.63 6.69 -51.92 -0.35 0.29 16 41 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 44 H 0.06 0.67 4.98 -51.93 -0.26 0.41 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.81 6.58 -51.92 -0.34 0.47 16 47 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 48 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 49 H 0.38 11.00 6.90 -40.82 -0.28 10.72 16 50 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 51 H 0.07 1.11 6.69 -51.93 -0.35 0.76 16 52 H 0.10 2.26 6.22 -51.93 -0.32 1.94 16 LS Contribution 403.56 15.07 6.08 6.08 Total: -1.00 -36.52 403.56 -9.45 -45.98 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -8.24 Total: 9.94 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -2.06 Total: -6.46 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.11 Total: -58.09 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.10 Total: -15.61 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.52 -9.45 -45.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133299426.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.099 kcal (2) G-P(sol) polarization free energy of solvation -36.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds