Wall clock time and date at job start Wed Apr 1 2020 04:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46653 * 2 1 4 4 C 1.52995 * 109.46991 * 239.99785 * 2 1 3 5 5 C 1.50706 * 109.47109 * 65.00023 * 4 2 1 6 6 C 1.38238 * 119.99878 * 269.72313 * 5 4 2 7 7 C 1.38235 * 119.99652 * 179.76878 * 6 5 4 8 8 C 1.38230 * 120.00115 * 0.48507 * 7 6 5 9 9 C 1.38233 * 120.00270 * 359.79157 * 8 7 6 10 10 C 1.38233 * 119.99989 * 89.99834 * 5 4 2 11 11 C 1.50700 * 109.47148 * 119.99478 * 2 1 3 12 12 O 1.21284 * 119.99409 * 120.00209 * 11 2 1 13 13 N 1.34770 * 120.00131 * 300.00397 * 11 2 1 14 14 C 1.46500 * 119.99870 * 184.83333 * 13 11 2 15 15 C 1.53001 * 109.49514 * 298.39956 * 14 13 11 16 16 O 1.42896 * 109.47222 * 302.15849 * 15 14 13 17 17 C 1.53043 * 109.49910 * 58.46404 * 14 13 11 18 18 C 1.53042 * 109.53709 * 58.58913 * 17 14 13 19 19 C 1.53188 * 109.34094 * 61.34735 * 18 17 14 20 20 N 1.46938 * 108.77414 * 305.41589 * 19 18 17 21 21 C 1.36938 * 120.60516 * 233.53427 * 20 19 18 22 22 H 1.08000 * 120.00046 * 150.31191 * 21 20 19 23 23 C 1.38813 * 119.99924 * 330.31637 * 21 20 19 24 24 N 1.31614 * 119.99908 * 341.06744 * 23 21 20 25 25 Si 1.86805 * 119.99951 * 161.07049 * 23 21 20 26 26 H 1.48491 * 109.46946 * 94.97675 * 25 23 21 27 27 H 1.48500 * 109.46699 * 214.97655 * 25 23 21 28 28 H 1.48496 * 109.47005 * 334.97639 * 25 23 21 29 29 C 1.46932 * 118.76401 * 53.55263 * 20 19 18 30 30 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47182 * 300.00017 * 1 2 3 32 32 H 1.09006 * 109.47334 * 60.00230 * 1 2 3 33 33 H 1.08999 * 109.46938 * 184.99867 * 4 2 1 34 34 H 1.08996 * 109.47717 * 304.99820 * 4 2 1 35 35 H 1.07998 * 119.99934 * 0.02562 * 6 5 4 36 36 H 1.07998 * 119.99427 * 180.25480 * 7 6 5 37 37 H 1.08002 * 119.99739 * 179.77404 * 8 7 6 38 38 H 1.07999 * 120.00272 * 179.97438 * 9 8 7 39 39 H 1.08001 * 120.00031 * 0.02562 * 10 5 4 40 40 H 0.96999 * 120.00579 * 4.82790 * 13 11 2 41 41 H 1.08999 * 109.47262 * 62.16705 * 15 14 13 42 42 H 1.09008 * 109.46949 * 182.15751 * 15 14 13 43 43 H 0.96698 * 113.99942 * 179.97438 * 16 15 14 44 44 H 1.08997 * 109.46152 * 298.56794 * 17 14 13 45 45 H 1.08995 * 109.45842 * 178.60544 * 17 14 13 46 46 H 1.08993 * 109.49731 * 181.31613 * 18 17 14 47 47 H 1.09002 * 109.49414 * 301.38350 * 18 17 14 48 48 H 1.09006 * 109.58730 * 65.16906 * 19 18 17 49 49 H 1.09006 * 109.58733 * 185.59323 * 19 18 17 50 50 H 0.97001 * 119.99879 * 180.02562 * 24 23 21 51 51 H 1.08996 * 109.58293 * 186.62851 * 29 20 19 52 52 H 1.09000 * 109.58425 * 66.20255 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4766 6 6 0.4380 -0.2090 -3.1030 7 6 0.0702 0.5082 -4.2261 8 6 0.9100 1.4844 -4.7285 9 6 2.1158 1.7465 -4.1054 10 6 2.4813 1.0329 -2.9793 11 6 2.0323 -0.7103 1.2305 12 8 2.7296 -1.6964 1.1192 13 7 1.7067 -0.2498 2.4545 14 6 2.2800 -0.8753 3.6488 15 6 1.8501 -2.3422 3.7133 16 8 0.4233 -2.4204 3.7230 17 6 3.8069 -0.7928 3.5857 18 6 4.2366 0.6727 3.4873 19 6 3.7629 1.4252 4.7348 20 7 2.3143 1.2291 4.8837 21 6 1.4744 2.3036 5.0065 22 1 0.4580 2.2384 4.6471 23 6 1.9293 3.4767 5.5930 24 7 3.0033 3.4587 6.3534 25 14 1.0169 5.0808 5.3029 26 1 0.0598 5.3137 6.4141 27 1 1.9906 6.2005 5.2453 28 1 0.2751 5.0031 4.0188 29 6 1.7841 -0.1411 4.8986 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.1263 -0.7995 -1.2055 34 1 1.6054 -1.7198 -1.2951 35 1 -0.2165 -0.9742 -2.7126 36 1 -0.8717 0.3032 -4.7131 37 1 0.6242 2.0422 -5.6081 38 1 2.7722 2.5089 -4.4982 39 1 3.4236 1.2374 -2.4927 40 1 1.0929 0.4958 2.5448 41 1 2.2372 -2.8729 2.8435 42 1 2.2451 -2.7970 4.6218 43 1 0.0791 -3.3232 3.7627 44 1 4.1640 -1.3355 2.7105 45 1 4.2320 -1.2362 4.4861 46 1 5.3229 0.7295 3.4189 47 1 3.7921 1.1234 2.6000 48 1 4.2762 1.0351 5.6137 49 1 3.9790 2.4879 4.6245 50 1 3.3210 4.2784 6.7635 51 1 0.6946 -0.1113 4.8967 52 1 2.1361 -0.6593 5.7906 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484450737.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:34 Heat of formation + Delta-G solvation = -52.019079 kcal Electronic energy + Delta-G solvation = -32093.148255 eV Core-core repulsion = 28057.471669 eV Total energy + Delta-G solvation = -4035.676586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.29668 -39.37492 -37.64107 -36.01814 -34.84445 -33.83921 -32.30395 -31.08845 -30.89652 -30.49757 -29.48463 -26.74266 -25.43594 -25.05625 -23.84350 -22.61337 -22.19072 -21.42075 -20.64386 -19.52831 -18.63520 -17.18585 -16.92151 -16.72571 -16.56461 -15.57167 -15.32261 -15.10584 -14.90379 -14.81938 -14.36844 -14.08386 -13.82887 -13.53884 -13.47255 -13.39417 -12.94862 -12.90708 -12.73043 -12.57017 -12.41617 -12.26054 -12.03773 -11.89936 -11.50445 -11.30705 -11.16353 -11.10834 -11.05484 -11.01149 -10.86584 -10.74401 -10.40410 -10.17674 -10.09413 -9.79805 -9.68804 -9.50644 -9.05409 -8.97659 -8.74749 -8.48907 -8.40945 -6.69463 -5.83625 -3.26932 1.23837 1.28402 3.06753 3.34291 3.42407 3.43717 3.55461 3.75946 4.45131 4.52735 4.69101 4.73219 4.87901 4.92341 5.00559 5.04374 5.15808 5.30973 5.36119 5.39482 5.40445 5.43497 5.59186 5.64325 5.68779 5.72384 5.79181 5.79827 5.83024 5.94357 5.96209 5.99909 6.05818 6.18477 6.21547 6.30760 6.35581 6.39259 6.41116 6.49356 6.57708 6.64524 6.69159 6.82002 6.88376 6.89797 7.15004 7.34303 7.60060 7.75875 7.88316 8.12368 8.40285 8.71492 9.16321 9.79282 10.37510 11.24691 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.009777 B = 0.003507 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.178128 B = 7982.612565 C = 9531.343507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 H 0.096 0.904 4 C -0.060 4.060 5 C -0.074 4.074 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.129 4.129 9 C -0.119 4.119 10 C -0.116 4.116 11 C 0.521 3.479 12 O -0.557 6.557 13 N -0.686 5.686 14 C 0.167 3.833 15 C 0.066 3.934 16 O -0.565 6.565 17 C -0.119 4.119 18 C -0.135 4.135 19 C 0.172 3.828 20 N -0.587 5.587 21 C -0.258 4.258 22 H 0.065 0.935 23 C 0.008 3.992 24 N -0.897 5.897 25 Si 0.898 3.102 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.278 1.278 29 C 0.148 3.852 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.406 0.594 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.369 0.631 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.048 0.952 47 H 0.053 0.947 48 H 0.018 0.982 49 H 0.080 0.920 50 H 0.254 0.746 51 H 0.066 0.934 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.153 -8.573 -16.660 19.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.114 0.886 4 C -0.097 4.097 5 C -0.074 4.074 6 C -0.133 4.133 7 C -0.139 4.139 8 C -0.147 4.147 9 C -0.137 4.137 10 C -0.134 4.134 11 C 0.307 3.693 12 O -0.437 6.437 13 N -0.335 5.335 14 C 0.079 3.921 15 C -0.013 4.013 16 O -0.369 6.369 17 C -0.158 4.158 18 C -0.175 4.175 19 C 0.046 3.954 20 N -0.310 5.310 21 C -0.388 4.388 22 H 0.082 0.918 23 C -0.191 4.191 24 N -0.540 5.540 25 Si 0.728 3.272 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.204 1.204 29 C 0.021 3.979 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.241 0.759 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.214 0.786 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.036 0.964 49 H 0.098 0.902 50 H 0.064 0.936 51 H 0.085 0.915 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.512 -8.430 -16.620 18.805 hybrid contribution -0.666 0.719 0.089 0.984 sum -3.178 -7.711 -16.532 18.516 Atomic orbital electron populations 1.21826 0.93055 1.02459 1.02813 1.21252 0.97709 1.00924 0.92784 0.88621 1.20391 1.02076 0.97859 0.89403 1.19955 0.94459 0.96525 0.96493 1.21095 0.96302 1.00092 0.95847 1.21131 0.99582 0.96539 0.96677 1.21117 0.94853 0.98474 1.00216 1.21146 0.96832 0.99641 0.96082 1.21124 0.99826 0.96016 0.96465 1.20379 0.79982 0.84247 0.84678 1.90568 1.39603 1.26529 1.86991 1.45787 1.47363 1.35908 1.04464 1.20943 0.93439 0.90366 0.87378 1.22674 0.80913 0.97518 1.00224 1.86508 1.20968 1.31736 1.97643 1.21727 0.93703 0.98428 1.01915 1.22086 0.98759 0.95030 1.01598 1.20750 0.83426 0.99645 0.91548 1.44041 1.02956 0.99673 1.84306 1.19100 0.95489 0.90891 1.33302 0.91778 1.25051 0.98153 0.99316 0.96586 1.70064 1.25731 1.26724 1.31469 0.86360 0.78984 0.83780 0.78113 1.21456 1.21603 1.20351 1.21081 0.98074 0.86913 0.91803 0.92259 0.91832 0.91526 0.90161 0.90471 0.86079 0.86293 0.86410 0.86228 0.86010 0.75881 0.91769 0.93838 0.78599 0.91192 0.92116 0.93331 0.92798 0.96387 0.90169 0.93635 0.91526 0.95257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.67 37.16 0.32 -1.34 16 2 C -0.11 -1.36 2.72 -91.77 -0.25 -1.61 16 3 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 4 C -0.06 -0.71 4.19 -27.88 -0.12 -0.83 16 5 C -0.07 -0.82 4.70 -104.62 -0.49 -1.31 16 6 C -0.12 -1.16 7.98 -39.58 -0.32 -1.48 16 7 C -0.12 -1.13 10.05 -39.59 -0.40 -1.52 16 8 C -0.13 -1.19 10.05 -39.59 -0.40 -1.58 16 9 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 10 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 11 C 0.52 8.24 6.54 -10.99 -0.07 8.16 16 12 O -0.56 -9.89 12.20 5.55 0.07 -9.82 16 13 N -0.69 -11.51 3.93 -47.49 -0.19 -11.69 16 14 C 0.17 2.94 0.45 -131.70 -0.06 2.88 16 15 C 0.07 1.03 5.72 37.16 0.21 1.24 16 16 O -0.56 -8.33 13.01 -35.23 -0.46 -8.79 16 17 C -0.12 -2.13 4.45 -26.69 -0.12 -2.25 16 18 C -0.14 -2.62 5.93 -26.61 -0.16 -2.78 16 19 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 20 N -0.59 -13.95 2.89 -172.30 -0.50 -14.45 16 21 C -0.26 -6.74 9.55 -15.06 -0.14 -6.88 16 22 H 0.06 1.64 7.90 -52.49 -0.41 1.22 16 23 C 0.01 0.23 4.84 -17.43 -0.08 0.14 16 24 N -0.90 -25.43 11.45 55.49 0.64 -24.79 16 25 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 C 0.15 3.05 5.03 -3.71 -0.02 3.03 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.77 7.46 -51.93 -0.39 0.38 16 32 H 0.07 0.71 6.28 -51.93 -0.33 0.38 16 33 H 0.08 1.02 7.90 -51.93 -0.41 0.61 16 34 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.12 1.08 8.05 -52.49 -0.42 0.65 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.41 7.06 7.76 -40.82 -0.32 6.74 16 41 H 0.06 1.05 6.19 -51.93 -0.32 0.73 16 42 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.37 3.71 9.12 45.56 0.42 4.12 16 44 H 0.07 1.27 6.27 -51.93 -0.33 0.94 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.05 1.07 7.50 -51.93 -0.39 0.68 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.08 2.08 6.26 -51.93 -0.32 1.76 16 50 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 51 H 0.07 1.41 7.71 -51.93 -0.40 1.01 16 52 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 404.33 15.07 6.09 6.09 Total: -1.00 -30.38 404.33 -10.10 -40.48 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -7.83 Total: 12.26 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -2.89 Total: -5.34 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.05 Total: -50.93 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.39 Total: -18.61 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.38 -10.10 -40.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484450737.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.536 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds