Wall clock time and date at job start Wed Apr 1 2020 04:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46653 * 2 1 4 4 C 1.52995 * 109.46991 * 239.99785 * 2 1 3 5 5 C 1.50706 * 109.47109 * 65.00023 * 4 2 1 6 6 C 1.38238 * 119.99878 * 269.72313 * 5 4 2 7 7 C 1.38235 * 119.99652 * 179.76878 * 6 5 4 8 8 C 1.38230 * 120.00115 * 0.48507 * 7 6 5 9 9 C 1.38233 * 120.00270 * 359.79157 * 8 7 6 10 10 C 1.38233 * 119.99989 * 89.99834 * 5 4 2 11 11 C 1.50700 * 109.47148 * 119.99478 * 2 1 3 12 12 O 1.21284 * 119.99409 * 120.00209 * 11 2 1 13 13 N 1.34770 * 120.00131 * 300.00397 * 11 2 1 14 14 C 1.46500 * 119.99870 * 184.83333 * 13 11 2 15 15 C 1.53001 * 109.49514 * 298.39956 * 14 13 11 16 16 O 1.42896 * 109.47222 * 302.15849 * 15 14 13 17 17 C 1.53043 * 109.49910 * 58.46404 * 14 13 11 18 18 C 1.53042 * 109.53709 * 58.58913 * 17 14 13 19 19 C 1.53188 * 109.34094 * 61.34735 * 18 17 14 20 20 N 1.46938 * 108.77414 * 305.41589 * 19 18 17 21 21 C 1.36938 * 120.60516 * 233.53427 * 20 19 18 22 22 H 1.08000 * 120.00046 * 150.31191 * 21 20 19 23 23 C 1.38813 * 119.99924 * 330.31637 * 21 20 19 24 24 N 1.31614 * 119.99908 * 341.06744 * 23 21 20 25 25 Si 1.86805 * 119.99951 * 161.07049 * 23 21 20 26 26 H 1.48491 * 109.46946 * 94.97675 * 25 23 21 27 27 H 1.48500 * 109.46699 * 214.97655 * 25 23 21 28 28 H 1.48496 * 109.47005 * 334.97639 * 25 23 21 29 29 C 1.46932 * 118.76401 * 53.55263 * 20 19 18 30 30 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47182 * 300.00017 * 1 2 3 32 32 H 1.09006 * 109.47334 * 60.00230 * 1 2 3 33 33 H 1.08999 * 109.46938 * 184.99867 * 4 2 1 34 34 H 1.08996 * 109.47717 * 304.99820 * 4 2 1 35 35 H 1.07998 * 119.99934 * 0.02562 * 6 5 4 36 36 H 1.07998 * 119.99427 * 180.25480 * 7 6 5 37 37 H 1.08002 * 119.99739 * 179.77404 * 8 7 6 38 38 H 1.07999 * 120.00272 * 179.97438 * 9 8 7 39 39 H 1.08001 * 120.00031 * 0.02562 * 10 5 4 40 40 H 0.96999 * 120.00579 * 4.82790 * 13 11 2 41 41 H 1.08999 * 109.47262 * 62.16705 * 15 14 13 42 42 H 1.09008 * 109.46949 * 182.15751 * 15 14 13 43 43 H 0.96698 * 113.99942 * 179.97438 * 16 15 14 44 44 H 1.08997 * 109.46152 * 298.56794 * 17 14 13 45 45 H 1.08995 * 109.45842 * 178.60544 * 17 14 13 46 46 H 1.08993 * 109.49731 * 181.31613 * 18 17 14 47 47 H 1.09002 * 109.49414 * 301.38350 * 18 17 14 48 48 H 1.09006 * 109.58730 * 65.16906 * 19 18 17 49 49 H 1.09006 * 109.58733 * 185.59323 * 19 18 17 50 50 H 0.97001 * 119.99879 * 180.02562 * 24 23 21 51 51 H 1.08996 * 109.58293 * 186.62851 * 29 20 19 52 52 H 1.09000 * 109.58425 * 66.20255 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4766 6 6 0.4380 -0.2090 -3.1030 7 6 0.0702 0.5082 -4.2261 8 6 0.9100 1.4844 -4.7285 9 6 2.1158 1.7465 -4.1054 10 6 2.4813 1.0329 -2.9793 11 6 2.0323 -0.7103 1.2305 12 8 2.7296 -1.6964 1.1192 13 7 1.7067 -0.2498 2.4545 14 6 2.2800 -0.8753 3.6488 15 6 1.8501 -2.3422 3.7133 16 8 0.4233 -2.4204 3.7230 17 6 3.8069 -0.7928 3.5857 18 6 4.2366 0.6727 3.4873 19 6 3.7629 1.4252 4.7348 20 7 2.3143 1.2291 4.8837 21 6 1.4744 2.3036 5.0065 22 1 0.4580 2.2384 4.6471 23 6 1.9293 3.4767 5.5930 24 7 3.0033 3.4587 6.3534 25 14 1.0169 5.0808 5.3029 26 1 0.0598 5.3137 6.4141 27 1 1.9906 6.2005 5.2453 28 1 0.2751 5.0031 4.0188 29 6 1.7841 -0.1411 4.8986 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.1263 -0.7995 -1.2055 34 1 1.6054 -1.7198 -1.2951 35 1 -0.2165 -0.9742 -2.7126 36 1 -0.8717 0.3032 -4.7131 37 1 0.6242 2.0422 -5.6081 38 1 2.7722 2.5089 -4.4982 39 1 3.4236 1.2374 -2.4927 40 1 1.0929 0.4958 2.5448 41 1 2.2372 -2.8729 2.8435 42 1 2.2451 -2.7970 4.6218 43 1 0.0791 -3.3232 3.7627 44 1 4.1640 -1.3355 2.7105 45 1 4.2320 -1.2362 4.4861 46 1 5.3229 0.7295 3.4189 47 1 3.7921 1.1234 2.6000 48 1 4.2762 1.0351 5.6137 49 1 3.9790 2.4879 4.6245 50 1 3.3210 4.2784 6.7635 51 1 0.6946 -0.1113 4.8967 52 1 2.1361 -0.6593 5.7906 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484450737.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:33 Heat of formation + Delta-G solvation = -70.026876 kcal Electronic energy + Delta-G solvation = -32093.929131 eV Core-core repulsion = 28057.471669 eV Total energy + Delta-G solvation = -4036.457462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.58773 -40.25078 -39.02371 -37.37715 -35.87982 -35.43571 -33.87799 -32.34160 -32.08279 -31.73285 -30.79442 -27.63290 -27.29084 -26.58949 -24.91003 -23.92916 -23.35262 -22.60350 -21.98424 -20.77597 -20.04461 -18.67641 -18.28302 -18.05914 -17.47276 -16.88669 -16.67159 -16.43666 -16.02124 -15.90832 -15.76396 -15.51518 -15.15826 -14.82539 -14.68435 -14.60579 -14.27499 -14.19751 -14.01162 -13.72524 -13.59294 -13.44611 -13.26079 -13.11993 -12.98412 -12.90358 -12.77716 -12.49213 -12.21143 -12.16035 -12.05125 -11.97529 -11.84338 -11.74643 -11.71906 -11.49255 -11.18170 -10.99009 -10.54442 -10.28127 -9.77264 -9.75420 -9.54632 -8.66010 -7.86950 -5.32519 0.48384 0.54965 1.47270 1.50035 1.58787 1.80772 2.35310 2.51870 2.93624 3.28960 3.32627 3.63021 3.68040 3.90192 3.97539 3.99947 4.07709 4.17349 4.19865 4.24067 4.26817 4.34523 4.36463 4.48038 4.54398 4.60863 4.64020 4.70167 4.76630 4.84323 4.88775 4.88985 4.91603 4.95026 5.00021 5.06548 5.14048 5.18613 5.21949 5.25237 5.27548 5.29594 5.50150 5.62994 5.65093 5.67680 5.70501 5.78353 5.78864 6.17659 6.39067 6.78747 6.94845 7.15079 7.41431 7.84036 8.38570 9.19660 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.009777 B = 0.003507 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.178128 B = 7982.612565 C = 9531.343507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 H 0.094 0.906 4 C -0.049 4.049 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.125 4.125 8 C -0.132 4.132 9 C -0.128 4.128 10 C -0.133 4.133 11 C 0.521 3.479 12 O -0.575 6.575 13 N -0.688 5.688 14 C 0.170 3.830 15 C 0.076 3.924 16 O -0.577 6.577 17 C -0.113 4.113 18 C -0.122 4.122 19 C 0.182 3.818 20 N -0.599 5.599 21 C -0.260 4.260 22 H 0.069 0.931 23 C -0.043 4.043 24 N -0.931 5.931 25 Si 0.960 3.040 26 H -0.289 1.289 27 H -0.296 1.296 28 H -0.266 1.266 29 C 0.154 3.846 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.121 0.879 40 H 0.402 0.598 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.391 0.609 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.048 0.952 48 H -0.003 1.003 49 H 0.048 0.952 50 H 0.249 0.751 51 H 0.060 0.940 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.509 -9.084 -18.671 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 H 0.112 0.888 4 C -0.087 4.087 5 C -0.086 4.086 6 C -0.140 4.140 7 C -0.143 4.143 8 C -0.150 4.150 9 C -0.145 4.145 10 C -0.151 4.151 11 C 0.308 3.692 12 O -0.456 6.456 13 N -0.337 5.337 14 C 0.082 3.918 15 C -0.003 4.003 16 O -0.384 6.384 17 C -0.151 4.151 18 C -0.161 4.161 19 C 0.056 3.944 20 N -0.322 5.322 21 C -0.390 4.390 22 H 0.087 0.913 23 C -0.239 4.239 24 N -0.577 5.577 25 Si 0.788 3.212 26 H -0.216 1.216 27 H -0.223 1.223 28 H -0.191 1.191 29 C 0.027 3.973 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.139 0.861 40 H 0.237 0.763 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.239 0.761 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.067 0.933 48 H 0.015 0.985 49 H 0.067 0.933 50 H 0.058 0.942 51 H 0.078 0.922 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.892 -8.983 -18.654 21.067 hybrid contribution -0.271 0.824 0.702 1.116 sum -4.162 -8.160 -17.952 20.154 Atomic orbital electron populations 1.21770 0.91772 1.02763 1.03071 1.21225 0.98661 1.00384 0.91705 0.88830 1.20250 1.01123 0.97809 0.89526 1.19899 0.95268 0.96999 0.96484 1.21271 0.96067 1.00496 0.96191 1.21448 1.00452 0.96099 0.96320 1.21458 0.94448 0.98382 1.00707 1.21404 0.97510 0.99857 0.95779 1.21265 1.00059 0.96531 0.97227 1.20826 0.79394 0.83972 0.84971 1.90557 1.40394 1.27435 1.87231 1.45796 1.47413 1.35856 1.04651 1.20791 0.93176 0.91460 0.86365 1.22467 0.81578 0.95590 1.00683 1.86452 1.20295 1.34001 1.97636 1.21662 0.94043 0.97087 1.02317 1.21901 0.99600 0.95537 0.99087 1.20532 0.83334 0.98099 0.92452 1.44200 1.02933 1.00601 1.84436 1.19424 0.95869 0.91638 1.32061 0.91342 1.25750 0.99184 1.02170 0.96823 1.70202 1.27512 1.26987 1.32980 0.85382 0.77631 0.79922 0.78235 1.21560 1.22277 1.19059 1.21078 0.97581 0.85459 0.93146 0.91914 0.92435 0.90331 0.91474 0.90674 0.85062 0.84099 0.84215 0.84693 0.86099 0.76271 0.92151 0.92511 0.76052 0.90847 0.91499 0.91800 0.93300 0.98473 0.93319 0.94215 0.92150 0.95824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.67 71.98 0.62 -2.31 16 2 C -0.10 -2.44 2.72 -11.54 -0.03 -2.48 16 3 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.05 -1.14 4.19 29.85 0.13 -1.01 16 5 C -0.09 -1.81 4.70 -19.86 -0.09 -1.90 16 6 C -0.12 -2.23 7.98 22.27 0.18 -2.05 16 7 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 8 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 9 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 10 C -0.13 -2.74 9.70 22.27 0.22 -2.52 16 11 C 0.52 15.99 6.54 87.66 0.57 16.56 16 12 O -0.58 -19.83 12.20 -3.04 -0.04 -19.87 16 13 N -0.69 -22.54 3.93 -422.57 -1.66 -24.20 16 14 C 0.17 5.84 0.45 3.68 0.00 5.84 16 15 C 0.08 2.24 5.72 71.98 0.41 2.65 16 16 O -0.58 -15.87 13.01 -148.98 -1.94 -17.81 16 17 C -0.11 -3.92 4.45 30.62 0.14 -3.78 16 18 C -0.12 -4.70 5.93 30.67 0.18 -4.51 16 19 C 0.18 8.61 5.30 86.36 0.46 9.06 16 20 N -0.60 -28.71 2.89 -699.05 -2.02 -30.73 16 21 C -0.26 -13.62 9.55 84.03 0.80 -12.82 16 22 H 0.07 3.47 7.90 -2.91 -0.02 3.45 16 23 C -0.04 -2.34 4.84 84.86 0.41 -1.93 16 24 N -0.93 -54.14 11.45 21.65 0.25 -53.89 16 25 Si 0.96 43.71 29.59 68.60 2.03 45.74 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 28 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 29 C 0.15 6.27 5.03 86.36 0.43 6.70 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.31 7.46 -2.39 -0.02 1.29 16 32 H 0.08 1.51 6.28 -2.38 -0.01 1.50 16 33 H 0.07 1.71 7.90 -2.39 -0.02 1.69 16 34 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 35 H 0.13 2.05 8.05 -2.91 -0.02 2.02 16 36 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 37 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.40 13.76 7.76 -92.71 -0.72 13.04 16 41 H 0.06 1.86 6.19 -2.39 -0.01 1.85 16 42 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.39 6.91 9.12 -74.06 -0.68 6.24 16 44 H 0.07 2.56 6.27 -2.39 -0.01 2.55 16 45 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.05 1.92 7.50 -2.39 -0.02 1.91 16 48 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 49 H 0.05 2.61 6.26 -2.38 -0.01 2.59 16 50 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 51 H 0.06 2.52 7.71 -2.39 -0.02 2.50 16 52 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -64.96 404.33 1.25 -63.72 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.47 Total: 37.28 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 5.10 Total: -0.22 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -3.43 Total: -108.83 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.98 Total: -37.68 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -64.96 1.25 -63.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484450737.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.311 kcal (2) G-P(sol) polarization free energy of solvation -64.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds