Wall clock time and date at job start Wed Apr 1 2020 05:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00451 * 2 1 4 4 C 1.38755 * 120.05265 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94685 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05209 * 359.97438 * 5 4 3 7 7 C 1.38239 * 120.11607 * 0.04188 * 6 5 4 8 8 C 1.38170 * 120.05165 * 359.95582 * 7 6 5 9 9 C 1.50701 * 120.02687 * 180.02562 * 8 7 6 10 10 H 1.09004 * 110.27283 * 179.27788 * 9 8 7 11 11 C 1.54598 * 110.31166 * 57.18723 * 9 8 7 12 12 C 1.55100 * 102.84674 * 219.18811 * 11 9 8 13 13 N 1.48531 * 103.28255 * 37.30196 * 12 11 9 14 14 C 1.46904 * 110.99938 * 200.33329 * 13 12 11 15 15 H 1.09001 * 109.47281 * 67.39638 * 14 13 12 16 16 C 1.52998 * 109.47190 * 187.39954 * 14 13 12 17 17 C 1.50699 * 109.47036 * 307.39962 * 14 13 12 18 18 O 1.21284 * 120.00093 * 359.97438 * 17 14 13 19 19 N 1.34777 * 120.00311 * 179.97438 * 17 14 13 20 20 C 1.46501 * 119.99677 * 359.97438 * 19 17 14 21 21 C 1.46503 * 120.00406 * 180.02562 * 19 17 14 22 22 C 1.50702 * 109.47243 * 89.99774 * 21 19 17 23 23 H 1.07999 * 119.99591 * 0.02562 * 22 21 19 24 24 C 1.37873 * 119.99710 * 180.02562 * 22 21 19 25 25 N 1.31513 * 120.00050 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99970 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47180 * 90.00128 * 26 24 22 28 28 H 1.48500 * 109.47765 * 210.00175 * 26 24 22 29 29 H 1.48507 * 109.47367 * 330.00205 * 26 24 22 30 30 C 1.47894 * 105.82371 * 320.84632 * 13 12 11 31 31 H 1.08997 * 109.46853 * 300.00033 * 1 2 3 32 32 H 1.09003 * 109.46650 * 60.00132 * 1 2 3 33 33 H 1.08996 * 109.47126 * 179.97438 * 1 2 3 34 34 H 1.08002 * 120.02693 * 359.70566 * 4 3 2 35 35 H 1.08001 * 119.97514 * 179.97438 * 5 4 3 36 36 H 1.07999 * 119.94062 * 180.02562 * 6 5 4 37 37 H 1.07997 * 119.98095 * 179.97438 * 7 6 5 38 38 H 1.09007 * 110.72174 * 337.48707 * 11 9 8 39 39 H 1.08998 * 110.72487 * 100.76921 * 11 9 8 40 40 H 1.09006 * 110.59031 * 278.87274 * 12 11 9 41 41 H 1.09003 * 110.82928 * 155.84984 * 12 11 9 42 42 H 1.08995 * 109.47092 * 299.99961 * 16 14 13 43 43 H 1.09004 * 109.47214 * 60.00443 * 16 14 13 44 44 H 1.09005 * 109.47119 * 179.97438 * 16 14 13 45 45 H 1.09005 * 109.46692 * 90.00563 * 20 19 17 46 46 H 1.08999 * 109.47574 * 210.00079 * 20 19 17 47 47 H 1.09000 * 109.47657 * 330.00320 * 20 19 17 48 48 H 1.08996 * 109.47084 * 209.99685 * 21 19 17 49 49 H 1.09004 * 109.46951 * 329.99490 * 21 19 17 50 50 H 0.97008 * 119.99865 * 180.02562 * 25 24 22 51 51 H 1.08997 * 109.92300 * 265.97836 * 30 13 12 52 52 H 1.09001 * 109.91786 * 144.68259 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0561 2.5171 0.0007 8 6 3.4311 1.2848 0.0002 9 6 4.2537 0.0221 -0.0001 10 1 3.6032 -0.8525 0.0124 11 6 5.2049 0.0009 1.2185 12 6 6.5052 -0.6066 0.6305 13 7 6.5676 -0.0233 -0.7341 14 6 7.4357 -0.8227 -1.6090 15 1 6.9766 -1.7953 -1.7861 16 6 7.6230 -0.0967 -2.9428 17 6 8.7766 -1.0131 -0.9481 18 8 8.9884 -0.5300 0.1440 19 7 9.7405 -1.7201 -1.5706 20 6 9.4845 -2.3041 -2.8896 21 6 11.0439 -1.9057 -0.9278 22 6 11.0171 -3.1582 -0.0902 23 1 10.1193 -3.7564 -0.0420 24 6 12.1390 -3.5404 0.6143 25 7 13.2321 -2.8116 0.5558 26 14 12.1057 -5.0925 1.6530 27 1 12.5342 -6.2500 0.8273 28 1 13.0298 -4.9372 2.8051 29 1 10.7266 -5.3244 2.1527 30 6 5.1755 -0.0150 -1.2332 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 0.2129 2.3203 -0.0038 35 1 1.3341 4.5114 0.0011 36 1 3.7923 4.6380 0.0024 37 1 5.1345 2.5751 0.0007 38 1 5.3834 1.0114 1.5861 39 1 4.8044 -0.6333 2.0094 40 1 6.4328 -1.6931 0.5815 41 1 7.3732 -0.3062 1.2174 42 1 6.6532 0.0410 -3.4208 43 1 8.0823 0.8759 -2.7657 44 1 8.2676 -0.6896 -3.5918 45 1 9.7631 -1.5890 -3.6637 46 1 10.0747 -3.2131 -3.0053 47 1 8.4253 -2.5445 -2.9812 48 1 11.8161 -1.9958 -1.6917 49 1 11.2606 -1.0476 -0.2915 50 1 14.0216 -3.0807 1.0512 51 1 4.9835 -0.9177 -1.8132 52 1 5.0071 0.8683 -1.8493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369543607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:19 Heat of formation + Delta-G solvation = -25.645063 kcal Electronic energy + Delta-G solvation = -31130.463231 eV Core-core repulsion = 27095.930308 eV Total energy + Delta-G solvation = -4034.532922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.68455 -39.71708 -38.16420 -37.23031 -34.84864 -33.96196 -32.58386 -31.28222 -30.28962 -28.77924 -28.26588 -27.42659 -27.29955 -26.04200 -24.12087 -22.99339 -22.27511 -21.87655 -20.93832 -19.83660 -18.44682 -18.25319 -16.82030 -16.58051 -16.33472 -15.98530 -15.97582 -15.74474 -14.95007 -14.72997 -14.55505 -14.47580 -14.08451 -13.83036 -13.74067 -13.47928 -13.10560 -12.88661 -12.72869 -12.41451 -12.26046 -12.22904 -12.11367 -11.98497 -11.76601 -11.71897 -11.39081 -11.32440 -11.30295 -11.17186 -11.12894 -10.90804 -10.83754 -10.54912 -10.53266 -10.42049 -10.08879 -9.60443 -8.99158 -8.66448 -8.42331 -8.29341 -8.11053 -7.59485 -6.02835 -4.07584 1.15654 1.28117 3.03867 3.30480 3.37168 3.40591 3.48868 3.57280 3.80582 4.30773 4.45334 4.47314 4.58930 4.71633 4.82006 4.83684 4.90594 5.00464 5.03319 5.12856 5.16656 5.27729 5.30570 5.32743 5.34998 5.40914 5.48953 5.58641 5.61966 5.69370 5.77327 5.81292 5.89493 5.92235 5.96341 6.01266 6.08419 6.16476 6.18357 6.24617 6.34931 6.39682 6.48459 6.59972 6.66295 7.02720 7.13259 7.18140 7.24515 7.48320 7.58748 7.93930 8.25304 8.46157 8.92467 9.15980 9.57560 11.05095 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.002354 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.410637 B =11892.969936 C =12317.940979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.125 3.875 4 C -0.211 4.211 5 C -0.088 4.088 6 C -0.156 4.156 7 C -0.070 4.070 8 C -0.097 4.097 9 C -0.054 4.054 10 H 0.087 0.913 11 C -0.115 4.115 12 C 0.034 3.966 13 N -0.493 5.493 14 C 0.055 3.945 15 H 0.060 0.940 16 C -0.148 4.148 17 C 0.511 3.489 18 O -0.526 6.526 19 N -0.602 5.602 20 C 0.082 3.918 21 C 0.247 3.753 22 C -0.525 4.525 23 H 0.056 0.944 24 C 0.061 3.939 25 N -0.894 5.894 26 Si 0.897 3.103 27 H -0.281 1.281 28 H -0.285 1.285 29 H -0.274 1.274 30 C 0.046 3.954 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.138 0.862 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.118 0.882 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.048 0.952 46 H 0.072 0.928 47 H 0.056 0.944 48 H 0.031 0.969 49 H 0.044 0.956 50 H 0.263 0.737 51 H 0.043 0.957 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.260 8.866 -6.063 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.080 3.920 4 C -0.229 4.229 5 C -0.106 4.106 6 C -0.174 4.174 7 C -0.088 4.088 8 C -0.098 4.098 9 C -0.073 4.073 10 H 0.105 0.895 11 C -0.153 4.153 12 C -0.093 4.093 13 N -0.218 5.218 14 C -0.057 4.057 15 H 0.077 0.923 16 C -0.206 4.206 17 C 0.297 3.703 18 O -0.403 6.403 19 N -0.334 5.334 20 C -0.062 4.062 21 C 0.127 3.873 22 C -0.564 4.564 23 H 0.074 0.926 24 C -0.141 4.141 25 N -0.533 5.533 26 Si 0.725 3.275 27 H -0.207 1.207 28 H -0.211 1.211 29 H -0.199 1.199 30 C -0.082 4.082 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.156 0.844 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.136 0.864 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.049 0.951 49 H 0.062 0.938 50 H 0.073 0.927 51 H 0.061 0.939 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.617 9.446 -5.416 26.918 hybrid contribution -0.668 -1.672 0.387 1.842 sum -25.285 7.774 -5.030 26.927 Atomic orbital electron populations 1.23031 0.78683 1.03830 1.01156 1.86075 1.21041 1.26938 1.88773 1.18865 0.91838 0.84127 0.97151 1.21161 0.99726 0.92436 1.09626 1.20903 0.94767 0.96775 0.98192 1.21085 0.93793 0.98563 1.03939 1.21057 1.00824 0.90725 0.96175 1.19186 0.89872 0.95660 1.05044 1.20872 0.95538 0.95149 0.95771 0.89499 1.22712 0.94382 1.02024 0.96217 1.23556 0.99042 0.96526 0.90215 1.64683 1.06271 1.48759 1.02085 1.21833 0.93528 0.95954 0.94404 0.92255 1.21981 1.02263 1.01720 0.94595 1.20058 0.85361 0.79122 0.85801 1.90586 1.80426 1.49133 1.20122 1.48103 1.15879 1.51107 1.18349 1.21785 1.00675 0.98704 0.85056 1.19274 0.77316 0.97716 0.92944 1.21418 0.98123 1.08435 1.28391 0.92622 1.24931 0.95362 0.97268 0.96558 1.69935 1.02531 1.38401 1.42469 0.86511 0.77965 0.83038 0.79982 1.20686 1.21072 1.19933 1.23004 0.87962 1.01079 0.96180 0.92792 0.92809 0.88343 0.85804 0.86121 0.85920 0.84387 0.90526 0.91227 0.94496 0.86404 0.92336 0.91417 0.90683 0.93364 0.90915 0.92511 0.95070 0.93775 0.92732 0.93893 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.29 9.29 -19.42 -0.18 -3.47 16 3 C 0.13 1.38 6.66 -39.22 -0.26 1.11 16 4 C -0.21 -1.96 9.04 -39.43 -0.36 -2.31 16 5 C -0.09 -0.78 10.04 -39.61 -0.40 -1.18 16 6 C -0.16 -1.50 10.04 -39.56 -0.40 -1.90 16 7 C -0.07 -0.78 8.12 -39.61 -0.32 -1.10 16 8 C -0.10 -1.13 4.73 -104.47 -0.49 -1.63 16 9 C -0.05 -0.67 3.16 -90.41 -0.29 -0.95 16 10 H 0.09 1.08 7.06 -51.93 -0.37 0.72 16 11 C -0.12 -1.54 6.51 -24.78 -0.16 -1.70 16 12 C 0.03 0.55 5.31 -1.81 -0.01 0.54 16 13 N -0.49 -7.65 4.97 -223.78 -1.11 -8.76 16 14 C 0.06 0.88 1.47 -68.86 -0.10 0.78 16 15 H 0.06 0.90 7.07 -51.93 -0.37 0.54 16 16 C -0.15 -1.94 8.88 37.16 0.33 -1.61 16 17 C 0.51 10.76 6.78 -10.99 -0.07 10.68 16 18 O -0.53 -13.10 13.10 5.55 0.07 -13.03 16 19 N -0.60 -12.87 2.86 -182.95 -0.52 -13.39 16 20 C 0.08 1.31 8.80 59.85 0.53 1.83 16 21 C 0.25 6.50 5.16 -5.19 -0.03 6.47 16 22 C -0.52 -14.94 9.39 -34.44 -0.32 -15.27 16 23 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 24 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 25 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 26 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 30 C 0.05 0.58 5.23 -2.76 -0.01 0.57 16 31 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 32 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.12 0.87 6.30 -52.49 -0.33 0.54 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.14 1.60 7.78 -52.49 -0.41 1.19 16 38 H 0.08 1.02 6.94 -51.93 -0.36 0.66 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.63 8.02 -51.93 -0.42 0.21 16 41 H 0.12 2.33 5.96 -51.93 -0.31 2.02 16 42 H 0.06 0.64 7.52 -51.93 -0.39 0.25 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.90 4.54 -51.93 -0.24 0.66 16 45 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 46 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 47 H 0.06 0.76 6.01 -51.93 -0.31 0.45 16 48 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 49 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 50 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 51 H 0.04 0.52 7.57 -51.93 -0.39 0.13 16 52 H 0.08 0.97 7.31 -51.93 -0.38 0.59 16 LS Contribution 403.55 15.07 6.08 6.08 Total: -1.00 -33.46 403.55 -9.73 -43.19 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.31 Total: 1.23 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.48 Total: -2.84 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.90 Total: -48.13 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.11 Total: -16.50 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.46 -9.73 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369543607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.546 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds