Wall clock time and date at job start Wed Apr 1 2020 03:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47198 * 2 1 4 4 C 1.35904 * 116.99953 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.05212 * 180.02562 * 4 3 2 6 6 C 1.38146 * 119.94224 * 180.02562 * 5 4 3 7 7 C 1.38271 * 120.05490 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.94208 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47187 * 90.00279 * 8 7 6 10 10 O 1.21281 * 120.00170 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00361 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00496 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.21192 * 36.93693 * 12 11 9 14 14 C 1.50131 * 110.25034 * 159.01638 * 12 11 9 15 15 C 1.54841 * 110.81932 * 216.65761 * 14 12 11 16 16 C 1.54901 * 110.13817 * 321.13550 * 15 14 12 17 17 N 1.43427 * 116.08503 * 318.64043 * 16 15 14 18 18 C 1.36938 * 120.53433 * 271.84777 * 17 16 15 19 19 H 1.08005 * 120.00375 * 336.58662 * 18 17 16 20 20 C 1.38813 * 120.00189 * 156.59334 * 18 17 16 21 21 N 1.31620 * 120.00003 * 340.36999 * 20 18 17 22 22 Si 1.86800 * 120.00241 * 160.36188 * 20 18 17 23 23 H 1.48505 * 109.46863 * 60.00432 * 22 20 18 24 24 H 1.48503 * 109.47285 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47471 * 300.00290 * 22 20 18 26 26 C 1.50168 * 118.92889 * 91.56816 * 17 16 15 27 27 C 1.46240 * 107.53123 * 289.59210 * 26 17 16 28 28 C 1.38265 * 120.11079 * 0.29682 * 7 6 5 29 29 C 1.38149 * 120.05246 * 359.45544 * 28 7 6 30 30 H 1.09001 * 109.47266 * 59.99109 * 1 2 3 31 31 H 1.08994 * 109.47538 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46883 * 300.00050 * 1 2 3 33 33 H 1.09001 * 109.46900 * 240.00916 * 2 1 3 34 34 H 1.08991 * 109.47069 * 120.00350 * 2 1 3 35 35 H 1.07995 * 120.03150 * 0.04921 * 5 4 3 36 36 H 1.07997 * 119.97422 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.47276 * 329.99998 * 8 7 6 38 38 H 1.08998 * 109.46623 * 210.00014 * 8 7 6 39 39 H 0.97002 * 119.99326 * 0.02562 * 11 9 8 40 40 H 1.08998 * 109.20847 * 337.01084 * 14 12 11 41 41 H 1.09006 * 109.20221 * 96.36004 * 14 12 11 42 42 H 1.08998 * 109.35608 * 81.33963 * 15 14 12 43 43 H 1.08995 * 109.35897 * 200.93148 * 15 14 12 44 44 H 1.09004 * 108.15391 * 196.92055 * 16 15 14 45 45 H 1.09007 * 108.16022 * 80.36184 * 16 15 14 46 46 H 0.96996 * 120.00343 * 180.02562 * 21 20 18 47 47 H 1.08993 * 109.84820 * 49.09749 * 26 17 16 48 48 H 1.08994 * 109.84643 * 170.02133 * 26 17 16 49 49 H 1.08993 * 108.52490 * 179.65163 * 27 26 17 50 50 H 1.09000 * 108.52137 * 297.16714 * 27 26 17 51 51 H 1.07994 * 119.97213 * 179.69939 * 28 7 6 52 52 H 1.08000 * 120.02452 * 180.29562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 3.8851 2.8068 0.0011 6 6 5.2550 2.9851 0.0011 7 6 6.0962 1.8877 0.0011 8 6 7.5902 2.0852 0.0017 9 6 8.0877 2.1506 1.4226 10 8 7.3060 2.0474 2.3442 11 7 9.4013 2.3236 1.6695 12 6 9.8849 2.3877 3.0508 13 1 9.3251 1.6942 3.6784 14 6 11.3518 2.0721 3.1031 15 6 11.6955 1.2627 4.3775 16 6 10.8770 1.7910 5.5818 17 7 10.7508 3.2162 5.6819 18 6 11.6931 3.9530 6.3486 19 1 12.3082 3.4866 7.1040 20 6 11.8576 5.2994 6.0538 21 7 11.4154 5.7819 4.9119 22 14 12.7064 6.4267 7.2778 23 1 14.0886 5.9414 7.5217 24 1 12.7562 7.8057 6.7289 25 1 11.9500 6.4291 8.5557 26 6 9.5720 3.8881 5.0384 27 6 9.7564 3.8088 3.5898 28 6 5.5690 0.6096 -0.0051 29 6 4.1998 0.4260 0.0000 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.2285 3.6642 0.0019 36 1 5.6693 3.9825 0.0020 37 1 7.8340 3.0153 -0.5117 38 1 8.0672 1.2507 -0.5122 39 1 10.0265 2.4065 0.9324 40 1 11.6247 1.4893 2.2234 41 1 11.9189 3.0031 3.1064 42 1 11.4585 0.2116 4.2128 43 1 12.7595 1.3618 4.5924 44 1 11.3445 1.4263 6.4964 45 1 9.8755 1.3644 5.5253 46 1 11.5306 6.7227 4.7057 47 1 8.6531 3.3756 5.3230 48 1 9.5253 4.9315 5.3498 49 1 8.9051 4.2871 3.1057 50 1 10.6571 4.3624 3.3246 51 1 6.2281 -0.2459 -0.0100 52 1 3.7885 -0.5726 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052915708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:20 Heat of formation + Delta-G solvation = -27.647559 kcal Electronic energy + Delta-G solvation = -30535.634961 eV Core-core repulsion = 26501.015204 eV Total energy + Delta-G solvation = -4034.619757 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.39140 -39.58371 -38.03712 -37.21770 -34.48726 -32.84405 -32.43008 -31.55040 -30.99831 -30.75069 -30.32562 -27.16444 -25.89489 -24.28890 -23.76207 -23.06078 -22.29666 -21.46911 -20.06703 -19.90950 -19.08146 -18.42693 -16.70018 -16.62138 -16.32832 -16.20063 -15.99979 -15.13502 -14.89362 -14.77664 -14.40807 -13.92133 -13.79618 -13.69590 -13.64266 -13.53081 -13.44390 -13.19287 -12.93526 -12.76192 -12.18761 -12.03781 -11.95771 -11.84922 -11.70178 -11.58262 -11.36254 -11.18624 -10.93224 -10.86421 -10.74582 -10.71607 -10.31824 -10.16611 -9.93438 -9.77374 -9.49718 -9.42177 -9.20972 -9.04418 -8.59270 -8.26591 -8.15381 -6.67874 -5.75568 -3.14417 1.29784 1.33623 2.98843 2.99580 3.40602 3.45925 3.46629 3.49047 3.86617 4.53927 4.56788 4.58978 4.67707 4.76080 4.78224 4.91410 5.10582 5.16831 5.18841 5.27538 5.37338 5.43359 5.43889 5.44973 5.51635 5.63774 5.66492 5.69558 5.73272 5.80662 5.95537 6.15864 6.18122 6.26002 6.31676 6.35679 6.51196 6.55479 6.60822 6.68476 6.71943 6.89123 6.93453 6.97141 7.13320 7.17311 7.28203 7.34810 7.64245 7.77340 7.92389 8.01407 8.46537 8.62968 9.22751 9.90736 10.44602 11.31433 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.002080 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.638291 B =13461.297358 C =13839.068184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.125 3.875 5 C -0.150 4.150 6 C -0.064 4.064 7 C -0.097 4.097 8 C -0.100 4.100 9 C 0.508 3.492 10 O -0.531 6.531 11 N -0.722 5.722 12 C 0.147 3.853 13 H 0.081 0.919 14 C -0.112 4.112 15 C -0.140 4.140 16 C 0.154 3.846 17 N -0.588 5.588 18 C -0.246 4.246 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.901 5.901 22 Si 0.900 3.100 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.286 1.286 26 C 0.169 3.831 27 C -0.131 4.131 28 C -0.066 4.066 29 C -0.207 4.207 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.393 0.607 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.054 0.946 44 H 0.032 0.968 45 H 0.029 0.971 46 H 0.252 0.748 47 H 0.009 0.991 48 H 0.090 0.910 49 H 0.028 0.972 50 H 0.101 0.899 51 H 0.122 0.878 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.566 -11.196 -15.597 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.080 3.920 5 C -0.169 4.169 6 C -0.082 4.082 7 C -0.097 4.097 8 C -0.140 4.140 9 C 0.293 3.707 10 O -0.408 6.408 11 N -0.373 5.373 12 C 0.044 3.956 13 H 0.099 0.901 14 C -0.150 4.150 15 C -0.181 4.181 16 C 0.025 3.975 17 N -0.309 5.309 18 C -0.376 4.376 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.212 1.212 26 C 0.045 3.955 27 C -0.170 4.170 28 C -0.084 4.084 29 C -0.226 4.226 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.226 0.774 40 H 0.058 0.942 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.062 0.938 47 H 0.027 0.973 48 H 0.108 0.892 49 H 0.047 0.953 50 H 0.119 0.881 51 H 0.140 0.860 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.289 -10.941 -14.940 23.390 hybrid contribution 1.039 0.445 0.118 1.136 sum -13.250 -10.497 -14.822 22.482 Atomic orbital electron populations 1.21773 0.92821 1.02787 1.03523 1.22759 0.95788 0.82168 1.01383 1.86054 1.19273 1.29132 1.88824 1.18960 0.82032 0.94227 0.96775 1.20361 0.95112 0.94754 1.06625 1.20817 0.92115 0.98687 0.96594 1.19195 0.93948 0.93325 1.03259 1.20641 0.93161 1.04691 0.95497 1.20437 0.82518 0.76821 0.90881 1.90727 1.54937 1.48936 1.46154 1.46304 1.07702 1.73786 1.09501 1.20467 0.94782 0.99709 0.80689 0.90056 1.21690 0.94974 1.01367 0.96944 1.22828 1.01186 0.96905 0.97209 1.20427 0.96203 0.86321 0.94535 1.44273 1.23331 1.00857 1.62463 1.19174 1.13722 0.91929 1.12761 0.91591 1.24888 1.00068 0.98475 0.96288 1.69954 1.50729 1.13519 1.20412 0.86404 0.79256 0.80029 0.81275 1.21148 1.21811 1.21234 1.20086 0.86013 0.98966 0.90392 1.21310 1.03054 0.93788 0.98893 1.20738 0.94251 0.96556 0.96836 1.21130 0.94237 0.97837 1.09415 0.91587 0.90431 0.91465 0.92154 0.92005 0.85301 0.85392 0.88187 0.88431 0.77387 0.94182 0.90130 0.93787 0.92706 0.94943 0.95311 0.93786 0.97317 0.89202 0.95308 0.88080 0.86026 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.53 16 2 C 0.05 0.43 5.46 37.16 0.20 0.63 16 3 O -0.32 -3.65 10.14 -19.44 -0.20 -3.85 16 4 C 0.12 1.54 6.69 -39.22 -0.26 1.28 16 5 C -0.15 -1.85 9.99 -39.43 -0.39 -2.24 16 6 C -0.06 -0.79 9.69 -39.60 -0.38 -1.17 16 7 C -0.10 -1.19 4.37 -104.60 -0.46 -1.65 16 8 C -0.10 -1.08 5.83 -29.04 -0.17 -1.25 16 9 C 0.51 7.84 7.68 -10.99 -0.08 7.76 16 10 O -0.53 -10.66 15.75 5.56 0.09 -10.58 16 11 N -0.72 -10.83 5.01 -55.45 -0.28 -11.10 16 12 C 0.15 2.74 2.17 -69.60 -0.15 2.59 16 13 H 0.08 1.70 5.84 -51.93 -0.30 1.39 16 14 C -0.11 -2.02 5.30 -27.19 -0.14 -2.16 16 15 C -0.14 -2.59 6.41 -24.76 -0.16 -2.75 16 16 C 0.15 3.29 5.17 -4.67 -0.02 3.27 16 17 N -0.59 -14.54 2.60 -175.09 -0.46 -15.00 16 18 C -0.25 -6.62 9.63 -15.06 -0.14 -6.76 16 19 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 20 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 21 N -0.90 -24.71 9.40 55.49 0.52 -24.18 16 22 Si 0.90 21.52 29.60 -169.99 -5.03 16.49 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.17 4.13 5.24 -5.20 -0.03 4.11 16 27 C -0.13 -2.88 4.73 -30.19 -0.14 -3.02 16 28 C -0.07 -0.77 9.69 -39.60 -0.38 -1.15 16 29 C -0.21 -2.36 9.04 -39.43 -0.36 -2.72 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 34 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.10 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.39 4.64 8.45 -40.82 -0.34 4.29 16 40 H 0.04 0.61 7.81 -51.93 -0.41 0.20 16 41 H 0.08 1.71 6.83 -51.93 -0.35 1.35 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.03 0.68 7.99 -51.93 -0.42 0.27 16 45 H 0.03 0.60 6.90 -51.92 -0.36 0.24 16 46 H 0.25 6.81 8.31 -40.82 -0.34 6.48 16 47 H 0.01 0.21 8.12 -51.93 -0.42 -0.21 16 48 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 49 H 0.03 0.64 7.90 -51.93 -0.41 0.23 16 50 H 0.10 2.47 5.27 -51.93 -0.27 2.20 16 51 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 52 H 0.12 1.13 6.30 -52.49 -0.33 0.80 16 LS Contribution 406.13 15.07 6.12 6.12 Total: -1.00 -31.81 406.13 -10.52 -42.33 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -8.50 Total: 5.62 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -2.78 Total: -5.85 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.21 Total: -50.29 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.11 Total: -14.42 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.81 -10.52 -42.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052915708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.678 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds