Wall clock time and date at job start Wed Apr 1 2020 03:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00079 * 2 1 4 4 H 1.48503 * 109.46983 * 239.99672 * 3 2 1 5 5 H 1.48493 * 109.47308 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47051 * 119.99786 * 3 2 1 7 7 C 1.38814 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00241 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00257 * 0.02562 * 7 2 1 10 10 C 1.47752 * 125.82401 * 14.06243 * 9 7 2 11 11 C 1.54906 * 104.84538 * 155.83065 * 10 9 7 12 12 C 1.55163 * 101.57740 * 37.09380 * 11 10 9 13 13 C 1.47027 * 125.64969 * 194.15531 * 9 7 2 14 14 H 1.08996 * 109.88294 * 300.59292 * 13 9 7 15 15 C 1.53004 * 109.87858 * 61.60774 * 13 9 7 16 16 C 1.52999 * 109.46844 * 183.32852 * 15 13 9 17 17 C 1.52996 * 109.47372 * 174.92572 * 16 15 13 18 18 N 1.46495 * 109.47590 * 180.02562 * 17 16 15 19 19 C 1.34780 * 120.00336 * 180.02562 * 18 17 16 20 20 O 1.21282 * 119.99589 * 359.97438 * 19 18 17 21 21 C 1.50699 * 119.99955 * 179.97438 * 19 18 17 22 22 H 1.09007 * 109.43053 * 299.89764 * 21 19 18 23 23 C 1.53121 * 109.42914 * 179.97438 * 21 19 18 24 24 C 1.53494 * 109.30865 * 170.02068 * 23 21 19 25 25 C 1.50706 * 108.06371 * 48.69059 * 24 23 21 26 26 C 1.33856 * 128.68609 * 164.25931 * 25 24 23 27 27 N 1.34416 * 107.80465 * 180.08789 * 26 25 24 28 28 C 1.30787 * 109.32301 * 359.97438 * 27 26 25 29 29 N 1.34409 * 108.54883 * 359.94128 * 28 27 26 30 30 C 1.46477 * 128.44464 * 180.18740 * 29 28 27 31 31 H 0.96998 * 119.99911 * 0.02562 * 1 2 3 32 32 H 1.09007 * 110.28555 * 37.02257 * 10 9 7 33 33 H 1.08996 * 110.43377 * 274.71195 * 10 9 7 34 34 H 1.09000 * 111.00353 * 279.02333 * 11 10 9 35 35 H 1.08997 * 111.03798 * 155.18491 * 11 10 9 36 36 H 1.09000 * 110.71474 * 206.13292 * 12 11 10 37 37 H 1.08994 * 110.71894 * 82.86714 * 12 11 10 38 38 H 1.09004 * 109.46885 * 63.33608 * 15 13 9 39 39 H 1.08993 * 109.47413 * 303.32662 * 15 13 9 40 40 H 1.09000 * 109.47153 * 54.92278 * 16 15 13 41 41 H 1.09000 * 109.47427 * 294.92787 * 16 15 13 42 42 H 1.09009 * 109.46816 * 300.00252 * 17 16 15 43 43 H 1.09000 * 109.47221 * 59.99748 * 17 16 15 44 44 H 0.97007 * 119.99633 * 359.97438 * 18 17 16 45 45 H 1.08998 * 109.49112 * 289.96747 * 23 21 19 46 46 H 1.08993 * 109.49885 * 50.06182 * 23 21 19 47 47 H 1.09000 * 109.74193 * 168.33882 * 24 23 21 48 48 H 1.09007 * 109.73725 * 289.00172 * 24 23 21 49 49 H 1.08008 * 126.09488 * 0.05243 * 26 25 24 50 50 H 1.07998 * 125.72903 * 179.97438 * 28 27 26 51 51 H 1.08996 * 109.59826 * 42.87456 * 30 29 28 52 52 H 1.08998 * 109.59661 * 282.40443 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1131 -2.5560 -0.2911 11 6 -0.2526 -4.0227 -0.7694 12 6 0.7679 -4.7477 0.1475 13 6 1.9002 -3.7093 0.2932 14 1 2.6995 -3.9308 -0.4139 15 6 2.4478 -3.7337 1.7217 16 6 3.1169 -5.0835 1.9884 17 6 3.7744 -5.0628 3.3698 18 7 4.4156 -6.3550 3.6249 19 6 5.0615 -6.5688 4.7884 20 8 5.1122 -5.6912 5.6239 21 6 5.7206 -7.8983 5.0510 22 1 4.9697 -8.6880 5.0187 23 6 6.3783 -7.8765 6.4336 24 6 6.8291 -9.2963 6.8037 25 6 7.5895 -9.8651 5.6335 26 6 8.3981 -10.9313 5.5997 27 7 8.8562 -11.0600 4.3425 28 6 8.3552 -10.1072 3.5997 29 7 7.5591 -9.3417 4.3657 30 6 6.7813 -8.1628 3.9772 31 1 -0.4850 0.8400 -0.0004 32 1 -0.4217 -1.8690 -1.0791 33 1 -0.7055 -2.3926 0.6092 34 1 0.0270 -4.1198 -1.8184 35 1 -1.2630 -4.3950 -0.6005 36 1 1.1366 -5.6561 -0.3287 37 1 0.3235 -4.9723 1.1170 38 1 1.6295 -3.5882 2.4270 39 1 3.1794 -2.9351 1.8440 40 1 3.8752 -5.2697 1.2279 41 1 2.3670 -5.8738 1.9548 42 1 4.5244 -4.2724 3.4034 43 1 3.0161 -4.8766 4.1303 44 1 4.3747 -7.0570 2.9567 45 1 7.2432 -7.2135 6.4145 46 1 5.6611 -7.5183 7.1721 47 1 7.4754 -9.2606 7.6807 48 1 5.9574 -9.9163 7.0138 49 1 8.6399 -11.5732 6.4339 50 1 8.5483 -9.9605 2.5473 51 1 6.2951 -8.3452 3.0189 52 1 7.4417 -7.2995 3.8964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480823743.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:02 Heat of formation + Delta-G solvation = 30.232301 kcal Electronic energy + Delta-G solvation = -29817.675005 eV Core-core repulsion = 25817.857858 eV Total energy + Delta-G solvation = -3999.817147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.73993 -40.26966 -37.92103 -36.75236 -35.67395 -33.51993 -33.03619 -32.26510 -31.12740 -29.43732 -28.53486 -27.82790 -25.45027 -24.81452 -24.13737 -22.85364 -21.80561 -21.64748 -20.69515 -20.15398 -19.52908 -19.18475 -17.81826 -17.29015 -16.78859 -16.25536 -16.01821 -15.87070 -15.21398 -14.94927 -14.62901 -14.52625 -14.40153 -14.27000 -14.07641 -13.85124 -13.76788 -13.52379 -12.93369 -12.56901 -12.33416 -12.18862 -12.10393 -11.96880 -11.77475 -11.69427 -11.50820 -11.46405 -11.07636 -10.84570 -10.78500 -10.62688 -10.36762 -10.16057 -10.10037 -10.02981 -9.93272 -9.80670 -9.65237 -9.63515 -9.32735 -8.70247 -8.59218 -6.79206 -5.75450 -3.10514 1.67044 2.10343 2.38381 2.79693 2.84319 3.38384 3.43271 3.43966 3.77051 3.99702 4.07045 4.26506 4.39628 4.47399 4.56163 4.63229 4.67721 4.85626 4.91239 4.96042 5.06454 5.08603 5.29437 5.32843 5.36531 5.41494 5.54027 5.56128 5.57072 5.67026 5.68114 5.79868 5.86593 5.94544 5.97176 6.02657 6.17753 6.25802 6.30197 6.37036 6.37627 6.53033 6.65505 6.68837 6.80267 6.90815 7.11849 7.15799 7.52939 7.60978 7.71184 7.78773 7.85011 8.28060 9.18945 9.80850 10.50412 11.36890 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.001788 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.510436 B =15657.348495 C =16199.324197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.227 4.227 8 H 0.073 0.927 9 N -0.596 5.596 10 C 0.172 3.828 11 C -0.150 4.150 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.030 0.970 15 C -0.122 4.122 16 C -0.127 4.127 17 C 0.116 3.884 18 N -0.726 5.726 19 C 0.517 3.483 20 O -0.528 6.528 21 C -0.120 4.120 22 H 0.108 0.892 23 C -0.106 4.106 24 C -0.046 4.046 25 C -0.025 4.025 26 C -0.024 4.024 27 N -0.496 5.496 28 C 0.185 3.815 29 N -0.456 5.456 30 C 0.114 3.886 31 H 0.253 0.747 32 H 0.070 0.930 33 H 0.024 0.976 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.399 0.601 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.084 0.916 49 H 0.169 0.831 50 H 0.206 0.794 51 H 0.098 0.902 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.583 -21.243 8.952 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.091 0.909 9 N -0.320 5.320 10 C 0.047 3.953 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.166 4.166 17 C -0.006 4.006 18 N -0.378 5.378 19 C 0.301 3.699 20 O -0.403 6.403 21 C -0.142 4.142 22 H 0.126 0.874 23 C -0.144 4.144 24 C -0.085 4.085 25 C -0.139 4.139 26 C -0.172 4.172 27 N -0.214 5.214 28 C -0.097 4.097 29 N -0.140 5.140 30 C -0.009 4.009 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.233 0.767 45 H 0.094 0.906 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.102 0.898 49 H 0.186 0.814 50 H 0.222 0.778 51 H 0.117 0.883 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.010 -20.812 9.192 25.275 hybrid contribution -0.151 1.228 -0.154 1.247 sum 10.858 -19.584 9.038 24.148 Atomic orbital electron populations 1.69922 1.04972 1.25243 1.56340 1.24895 0.95669 0.97759 1.01910 0.86254 0.78571 0.83329 0.77941 1.21166 1.21617 1.21094 1.18899 0.90243 0.82340 1.44071 0.90882 1.44605 1.05848 1.01179 1.80404 1.21467 0.85111 0.90072 0.98629 1.23008 0.97476 0.99796 0.98631 1.22587 0.97184 0.97096 0.99334 1.20917 0.93871 0.87073 0.92670 0.95237 1.22033 1.00116 0.94229 0.99844 1.21841 0.99799 1.00365 0.94555 1.21572 0.97059 0.83943 0.98072 1.46178 1.55590 1.17515 1.18497 1.20169 0.78940 0.88681 0.82068 1.90758 1.59640 1.44941 1.44993 1.21645 0.98095 0.97175 0.97291 0.87364 1.21510 1.01670 0.96640 0.94583 1.20270 0.99129 0.95168 0.93891 1.21219 1.06159 0.99454 0.87038 1.21850 1.00768 0.98901 0.95648 1.70513 1.25097 1.22594 1.03184 1.24856 0.95191 0.90579 0.99033 1.45367 1.36082 1.23438 1.09093 1.21877 0.93501 0.87232 0.98300 0.93665 0.91194 0.95845 0.92485 0.92548 0.92687 0.92078 0.92181 0.91674 0.91746 0.91675 0.91187 0.91261 0.76710 0.90645 0.89174 0.88936 0.89764 0.81360 0.77774 0.88345 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 10.58 55.49 0.59 -26.01 16 2 C -0.01 -0.15 5.47 -17.43 -0.10 -0.25 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.23 -6.12 9.75 -15.06 -0.15 -6.27 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.60 -14.57 3.14 -162.31 -0.51 -15.08 16 10 C 0.17 4.07 5.44 -2.35 -0.01 4.06 16 11 C -0.15 -2.74 7.09 -24.58 -0.17 -2.91 16 12 C -0.12 -2.00 5.61 -24.89 -0.14 -2.14 16 13 C 0.16 3.09 3.18 -66.95 -0.21 2.87 16 14 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 15 C -0.12 -2.02 4.69 -26.73 -0.13 -2.15 16 16 C -0.13 -1.46 5.07 -26.73 -0.14 -1.59 16 17 C 0.12 1.31 5.67 -4.05 -0.02 1.28 16 18 N -0.73 -6.05 5.46 -60.30 -0.33 -6.38 16 19 C 0.52 4.91 7.14 -10.98 -0.08 4.84 16 20 O -0.53 -7.38 15.81 5.56 0.09 -7.30 16 21 C -0.12 -0.76 2.52 -91.59 -0.23 -1.00 16 22 H 0.11 0.56 8.11 -51.92 -0.42 0.14 16 23 C -0.11 -0.73 4.69 -26.41 -0.12 -0.86 16 24 C -0.05 -0.26 6.31 -27.62 -0.17 -0.44 16 25 C -0.02 -0.20 6.57 -81.73 -0.54 -0.73 16 26 C -0.02 -0.23 11.84 -17.96 -0.21 -0.44 16 27 N -0.50 -5.33 11.27 -14.87 -0.17 -5.50 16 28 C 0.19 1.51 12.66 -90.71 -1.15 0.36 16 29 N -0.46 -3.36 3.13 -114.11 -0.36 -3.72 16 30 C 0.11 0.62 6.12 -3.93 -0.02 0.59 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.07 1.86 6.90 -51.93 -0.36 1.50 16 33 H 0.02 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.94 7.79 -51.93 -0.40 0.54 16 38 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 39 H 0.06 1.21 7.89 -51.93 -0.41 0.80 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.67 7.57 -51.93 -0.39 0.28 16 42 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.40 2.12 8.09 -40.82 -0.33 1.79 16 45 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 46 H 0.09 0.68 7.77 -51.93 -0.40 0.28 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 49 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 50 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 51 H 0.10 0.30 7.84 -51.93 -0.41 -0.10 16 52 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 LS Contribution 409.96 15.07 6.18 6.18 Total: -1.00 -34.29 409.96 -12.14 -46.42 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -9.01 Total: -0.65 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -3.59 Total: -4.77 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.78 Total: -56.69 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.09 Total: -7.30 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.29 -12.14 -46.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480823743.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.655 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds