Wall clock time and date at job start Wed Apr 1 2020 03:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00079 * 2 1 4 4 H 1.48503 * 109.46983 * 239.99672 * 3 2 1 5 5 H 1.48493 * 109.47308 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47051 * 119.99786 * 3 2 1 7 7 C 1.38814 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00241 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00257 * 0.02562 * 7 2 1 10 10 C 1.47752 * 125.82401 * 14.06243 * 9 7 2 11 11 C 1.54906 * 104.84538 * 155.83065 * 10 9 7 12 12 C 1.55163 * 101.57740 * 37.09380 * 11 10 9 13 13 C 1.47027 * 125.64969 * 194.15531 * 9 7 2 14 14 H 1.08996 * 109.88294 * 300.59292 * 13 9 7 15 15 C 1.53004 * 109.87858 * 61.60774 * 13 9 7 16 16 C 1.52999 * 109.46844 * 183.32852 * 15 13 9 17 17 C 1.52996 * 109.47372 * 174.92572 * 16 15 13 18 18 N 1.46495 * 109.47590 * 180.02562 * 17 16 15 19 19 C 1.34780 * 120.00336 * 180.02562 * 18 17 16 20 20 O 1.21282 * 119.99589 * 359.97438 * 19 18 17 21 21 C 1.50699 * 119.99955 * 179.97438 * 19 18 17 22 22 H 1.09007 * 109.43053 * 299.89764 * 21 19 18 23 23 C 1.53121 * 109.42914 * 179.97438 * 21 19 18 24 24 C 1.53494 * 109.30865 * 170.02068 * 23 21 19 25 25 C 1.50706 * 108.06371 * 48.69059 * 24 23 21 26 26 C 1.33856 * 128.68609 * 164.25931 * 25 24 23 27 27 N 1.34416 * 107.80465 * 180.08789 * 26 25 24 28 28 C 1.30787 * 109.32301 * 359.97438 * 27 26 25 29 29 N 1.34409 * 108.54883 * 359.94128 * 28 27 26 30 30 C 1.46477 * 128.44464 * 180.18740 * 29 28 27 31 31 H 0.96998 * 119.99911 * 0.02562 * 1 2 3 32 32 H 1.09007 * 110.28555 * 37.02257 * 10 9 7 33 33 H 1.08996 * 110.43377 * 274.71195 * 10 9 7 34 34 H 1.09000 * 111.00353 * 279.02333 * 11 10 9 35 35 H 1.08997 * 111.03798 * 155.18491 * 11 10 9 36 36 H 1.09000 * 110.71474 * 206.13292 * 12 11 10 37 37 H 1.08994 * 110.71894 * 82.86714 * 12 11 10 38 38 H 1.09004 * 109.46885 * 63.33608 * 15 13 9 39 39 H 1.08993 * 109.47413 * 303.32662 * 15 13 9 40 40 H 1.09000 * 109.47153 * 54.92278 * 16 15 13 41 41 H 1.09000 * 109.47427 * 294.92787 * 16 15 13 42 42 H 1.09009 * 109.46816 * 300.00252 * 17 16 15 43 43 H 1.09000 * 109.47221 * 59.99748 * 17 16 15 44 44 H 0.97007 * 119.99633 * 359.97438 * 18 17 16 45 45 H 1.08998 * 109.49112 * 289.96747 * 23 21 19 46 46 H 1.08993 * 109.49885 * 50.06182 * 23 21 19 47 47 H 1.09000 * 109.74193 * 168.33882 * 24 23 21 48 48 H 1.09007 * 109.73725 * 289.00172 * 24 23 21 49 49 H 1.08008 * 126.09488 * 0.05243 * 26 25 24 50 50 H 1.07998 * 125.72903 * 179.97438 * 28 27 26 51 51 H 1.08996 * 109.59826 * 42.87456 * 30 29 28 52 52 H 1.08998 * 109.59661 * 282.40443 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1131 -2.5560 -0.2911 11 6 -0.2526 -4.0227 -0.7694 12 6 0.7679 -4.7477 0.1475 13 6 1.9002 -3.7093 0.2932 14 1 2.6995 -3.9308 -0.4139 15 6 2.4478 -3.7337 1.7217 16 6 3.1169 -5.0835 1.9884 17 6 3.7744 -5.0628 3.3698 18 7 4.4156 -6.3550 3.6249 19 6 5.0615 -6.5688 4.7884 20 8 5.1122 -5.6912 5.6239 21 6 5.7206 -7.8983 5.0510 22 1 4.9697 -8.6880 5.0187 23 6 6.3783 -7.8765 6.4336 24 6 6.8291 -9.2963 6.8037 25 6 7.5895 -9.8651 5.6335 26 6 8.3981 -10.9313 5.5997 27 7 8.8562 -11.0600 4.3425 28 6 8.3552 -10.1072 3.5997 29 7 7.5591 -9.3417 4.3657 30 6 6.7813 -8.1628 3.9772 31 1 -0.4850 0.8400 -0.0004 32 1 -0.4217 -1.8690 -1.0791 33 1 -0.7055 -2.3926 0.6092 34 1 0.0270 -4.1198 -1.8184 35 1 -1.2630 -4.3950 -0.6005 36 1 1.1366 -5.6561 -0.3287 37 1 0.3235 -4.9723 1.1170 38 1 1.6295 -3.5882 2.4270 39 1 3.1794 -2.9351 1.8440 40 1 3.8752 -5.2697 1.2279 41 1 2.3670 -5.8738 1.9548 42 1 4.5244 -4.2724 3.4034 43 1 3.0161 -4.8766 4.1303 44 1 4.3747 -7.0570 2.9567 45 1 7.2432 -7.2135 6.4145 46 1 5.6611 -7.5183 7.1721 47 1 7.4754 -9.2606 7.6807 48 1 5.9574 -9.9163 7.0138 49 1 8.6399 -11.5732 6.4339 50 1 8.5483 -9.9605 2.5473 51 1 6.2951 -8.3452 3.0189 52 1 7.4417 -7.2995 3.8964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480823743.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:01 Heat of formation + Delta-G solvation = 9.856955 kcal Electronic energy + Delta-G solvation = -29818.558546 eV Core-core repulsion = 25817.857858 eV Total energy + Delta-G solvation = -4000.700688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.30087 -41.04677 -39.46114 -37.40318 -36.66095 -34.71387 -34.02527 -33.63437 -31.82816 -31.21401 -29.57392 -28.65910 -26.66850 -26.06721 -25.32059 -23.60508 -22.69425 -22.37759 -21.85665 -21.48927 -20.68751 -20.06106 -18.72230 -18.37015 -17.94544 -17.01964 -16.93958 -16.77538 -16.61377 -16.06025 -15.84920 -15.64847 -15.15902 -15.08831 -14.90874 -14.76938 -14.62239 -14.25098 -14.04011 -13.85240 -13.69023 -13.57177 -13.14059 -13.01636 -12.95321 -12.78151 -12.70758 -12.65509 -12.24040 -12.17289 -12.04343 -11.99000 -11.82107 -11.66457 -11.53505 -11.30523 -11.16998 -11.03495 -10.83730 -10.64618 -10.50171 -10.16327 -9.27651 -8.77154 -7.84986 -5.20161 1.11798 1.41918 1.44009 1.46392 1.52396 1.80124 2.10452 2.20969 2.49903 3.26697 3.33431 3.48735 3.53669 3.70973 3.76565 3.95158 3.95662 4.02216 4.09988 4.14606 4.18048 4.24419 4.27540 4.35842 4.36532 4.44645 4.46316 4.61873 4.64092 4.78287 4.82272 4.83637 4.87416 4.93103 5.00540 5.04548 5.05558 5.14562 5.15641 5.24863 5.34144 5.39490 5.41913 5.50998 5.54003 5.68602 5.72554 5.80287 5.80445 6.28081 6.28603 6.47893 7.12798 7.12848 7.16224 7.83129 8.50766 9.26440 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.001788 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.510436 B =15657.348495 C =16199.324197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.620 5.620 10 C 0.173 3.827 11 C -0.138 4.138 12 C -0.110 4.110 13 C 0.151 3.849 14 H 0.036 0.964 15 C -0.113 4.113 16 C -0.108 4.108 17 C 0.124 3.876 18 N -0.710 5.710 19 C 0.519 3.481 20 O -0.578 6.578 21 C -0.108 4.108 22 H 0.130 0.870 23 C -0.105 4.105 24 C -0.039 4.039 25 C -0.027 4.027 26 C -0.049 4.049 27 N -0.538 5.538 28 C 0.184 3.816 29 N -0.456 5.456 30 C 0.114 3.886 31 H 0.245 0.755 32 H 0.029 0.971 33 H -0.009 1.009 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.036 0.964 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.419 0.581 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.101 0.899 48 H 0.100 0.900 49 H 0.178 0.822 50 H 0.235 0.765 51 H 0.131 0.869 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.338 -24.062 8.257 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.799 3.201 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.094 0.906 9 N -0.344 5.344 10 C 0.048 3.952 11 C -0.176 4.176 12 C -0.148 4.148 13 C 0.045 3.955 14 H 0.054 0.946 15 C -0.153 4.153 16 C -0.146 4.146 17 C 0.000 4.000 18 N -0.362 5.362 19 C 0.305 3.695 20 O -0.457 6.457 21 C -0.130 4.130 22 H 0.148 0.852 23 C -0.143 4.143 24 C -0.077 4.077 25 C -0.142 4.142 26 C -0.195 4.195 27 N -0.257 5.257 28 C -0.098 4.098 29 N -0.139 5.139 30 C -0.008 4.008 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.009 0.991 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.256 0.744 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.195 0.805 50 H 0.251 0.749 51 H 0.149 0.851 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.788 -23.695 8.475 27.789 hybrid contribution -0.357 2.094 0.060 2.125 sum 11.431 -21.601 8.535 25.887 Atomic orbital electron populations 1.70140 1.06287 1.25162 1.58289 1.25670 0.96500 1.00958 1.02947 0.85276 0.77262 0.79408 0.78174 1.20242 1.22290 1.20582 1.19246 0.90667 0.83736 1.42211 0.90576 1.44924 1.06229 1.02518 1.80744 1.21269 0.84669 0.93239 0.96015 1.22880 0.99770 0.95691 0.99306 1.22586 0.95105 0.97327 0.99769 1.21233 0.95159 0.85346 0.93760 0.94592 1.21822 0.98976 0.96650 0.97867 1.21635 1.00520 0.97555 0.94900 1.21263 0.96234 0.84930 0.97601 1.45939 1.54646 1.16902 1.18757 1.20659 0.78245 0.89141 0.81427 1.90749 1.61463 1.46811 1.46668 1.21558 0.98628 0.95565 0.97222 0.85213 1.21463 1.00847 0.97023 0.94989 1.20293 0.99646 0.94283 0.93436 1.21491 1.05798 0.99085 0.87806 1.22144 1.01593 0.99999 0.95793 1.70476 1.26673 1.24352 1.04187 1.25432 0.94471 0.89846 1.00075 1.45469 1.36002 1.23627 1.08807 1.22020 0.93097 0.86501 0.99178 0.94570 0.95259 0.99141 0.91821 0.90170 0.88350 0.91046 0.94231 0.94558 0.89730 0.89116 0.93163 0.92973 0.74359 0.92298 0.90009 0.88031 0.88191 0.80501 0.74923 0.85078 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.48 10.58 21.65 0.23 -57.25 16 2 C -0.07 -3.86 5.47 84.86 0.46 -3.40 16 3 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.23 -12.60 9.75 84.03 0.82 -11.78 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.62 -30.61 3.14 -667.43 -2.09 -32.70 16 10 C 0.17 8.40 5.44 86.79 0.47 8.87 16 11 C -0.14 -4.72 7.09 31.99 0.23 -4.50 16 12 C -0.11 -3.13 5.61 31.78 0.18 -2.96 16 13 C 0.15 5.47 3.18 45.34 0.14 5.61 16 14 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 15 C -0.11 -3.63 4.69 30.60 0.14 -3.49 16 16 C -0.11 -2.11 5.07 30.59 0.16 -1.95 16 17 C 0.12 2.56 5.67 86.38 0.49 3.05 16 18 N -0.71 -9.64 5.46 -463.06 -2.53 -12.17 16 19 C 0.52 8.84 7.14 87.66 0.63 9.47 16 20 O -0.58 -15.99 15.81 -3.04 -0.05 -16.03 16 21 C -0.11 -1.08 2.52 -11.42 -0.03 -1.11 16 22 H 0.13 0.82 8.11 -2.38 -0.02 0.80 16 23 C -0.10 -1.30 4.69 30.80 0.14 -1.16 16 24 C -0.04 -0.37 6.31 30.02 0.19 -0.18 16 25 C -0.03 -0.38 6.57 40.73 0.27 -0.12 16 26 C -0.05 -0.86 11.84 83.30 0.99 0.13 16 27 N -0.54 -10.98 11.27 -200.97 -2.26 -13.24 16 28 C 0.18 2.58 12.66 180.38 2.28 4.87 16 29 N -0.46 -5.56 3.13 -514.93 -1.61 -7.17 16 30 C 0.11 0.86 6.12 86.46 0.53 1.39 16 31 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.03 1.62 6.90 -2.38 -0.02 1.60 16 33 H -0.01 -0.51 8.08 -2.39 -0.02 -0.53 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 1.92 7.79 -2.39 -0.02 1.90 16 38 H 0.04 1.41 8.07 -2.39 -0.02 1.39 16 39 H 0.04 1.35 7.89 -2.39 -0.02 1.33 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 1.39 7.57 -2.39 -0.02 1.37 16 42 H 0.05 1.25 8.14 -2.38 -0.02 1.24 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.42 2.43 8.09 -92.70 -0.75 1.68 16 45 H 0.06 0.92 8.12 -2.39 -0.02 0.90 16 46 H 0.08 1.17 7.77 -2.39 -0.02 1.15 16 47 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 49 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 50 H 0.23 1.48 8.06 -2.91 -0.02 1.46 16 51 H 0.13 0.15 7.84 -2.39 -0.02 0.13 16 52 H 0.09 0.78 8.12 -2.39 -0.02 0.77 16 Total: -1.00 -80.17 409.96 1.95 -78.22 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.15 Total: 9.54 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 8.09 Total: 2.75 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -8.27 Total: -122.53 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.05 Total: -16.03 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -80.17 1.95 -78.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480823743.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.077 kcal (2) G-P(sol) polarization free energy of solvation -80.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds