Wall clock time and date at job start Wed Apr 1 2020 03:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99822 * 2 1 4 4 H 1.48504 * 109.46975 * 354.39737 * 3 2 1 5 5 H 1.48497 * 109.47235 * 114.39310 * 3 2 1 6 6 H 1.48497 * 109.47169 * 234.39730 * 3 2 1 7 7 C 1.38811 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00028 * 9.18831 * 7 2 1 9 9 N 1.36934 * 119.99682 * 189.18324 * 7 2 1 10 10 C 1.47431 * 125.64876 * 29.90271 * 9 7 2 11 11 C 1.54911 * 104.83240 * 155.83386 * 10 9 7 12 12 C 1.55159 * 101.58096 * 37.00934 * 11 10 9 13 13 C 1.47024 * 125.65093 * 209.59382 * 9 7 2 14 14 H 1.09004 * 109.88214 * 300.51867 * 13 9 7 15 15 C 1.53004 * 109.88156 * 61.67995 * 13 9 7 16 16 C 1.53003 * 109.46737 * 292.65206 * 15 13 9 17 17 C 1.53005 * 109.46627 * 184.53373 * 16 15 13 18 18 N 1.46502 * 109.47006 * 179.97438 * 17 16 15 19 19 C 1.34772 * 120.00266 * 179.97438 * 18 17 16 20 20 O 1.21285 * 119.99770 * 0.02562 * 19 18 17 21 21 C 1.50704 * 120.00179 * 180.02562 * 19 18 17 22 22 H 1.08997 * 109.43300 * 60.09784 * 21 19 18 23 23 C 1.53119 * 109.43051 * 180.02562 * 21 19 18 24 24 C 1.53490 * 109.30702 * 189.98480 * 23 21 19 25 25 C 1.50714 * 108.05853 * 311.29203 * 24 23 21 26 26 C 1.33861 * 128.68393 * 195.74733 * 25 24 23 27 27 N 1.34423 * 107.79503 * 179.90652 * 26 25 24 28 28 C 1.30784 * 109.32600 * 0.02562 * 27 26 25 29 29 N 1.34406 * 108.55224 * 0.06278 * 28 27 26 30 30 C 1.46470 * 128.44573 * 179.80247 * 29 28 27 31 31 H 0.96994 * 119.99730 * 174.91017 * 1 2 3 32 32 H 1.08993 * 110.36795 * 274.66899 * 10 9 7 33 33 H 1.08996 * 110.36542 * 37.00080 * 10 9 7 34 34 H 1.08993 * 111.00805 * 155.08386 * 11 10 9 35 35 H 1.09004 * 111.00183 * 278.90074 * 11 10 9 36 36 H 1.09000 * 110.71769 * 82.86341 * 12 11 10 37 37 H 1.09000 * 110.71822 * 205.95922 * 12 11 10 38 38 H 1.08998 * 109.46886 * 52.64406 * 15 13 9 39 39 H 1.08994 * 109.47180 * 172.64920 * 15 13 9 40 40 H 1.08996 * 109.47140 * 304.52718 * 16 15 13 41 41 H 1.08998 * 109.47552 * 64.53355 * 16 15 13 42 42 H 1.08996 * 109.46825 * 299.99537 * 17 16 15 43 43 H 1.08992 * 109.47443 * 60.00105 * 17 16 15 44 44 H 0.96999 * 120.00027 * 0.02562 * 18 17 16 45 45 H 1.09008 * 109.49519 * 309.93268 * 23 21 19 46 46 H 1.08995 * 109.50471 * 70.03022 * 23 21 19 47 47 H 1.09003 * 109.74556 * 70.93196 * 24 23 21 48 48 H 1.09004 * 109.74607 * 191.65203 * 24 23 21 49 49 H 1.07997 * 126.09722 * 359.86436 * 26 25 24 50 50 H 1.07998 * 125.72660 * 180.02562 * 28 27 26 51 51 H 1.09003 * 109.59745 * 77.58551 * 30 29 28 52 52 H 1.08996 * 109.59988 * 317.11188 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2909 2.7431 -0.1367 5 1 2.9984 1.7574 1.2751 6 1 3.2036 1.6390 -1.1383 7 6 2.0103 -1.2021 -0.0005 8 1 1.4807 -2.1314 -0.1503 9 7 3.3665 -1.2098 0.1887 10 6 4.1291 -0.2273 0.9804 11 6 5.4208 -0.9726 1.3996 12 6 5.7142 -1.8226 0.1352 13 6 4.3025 -2.2027 -0.3586 14 1 4.0381 -3.1979 -0.0011 15 6 4.2623 -2.1682 -1.8877 16 6 2.9001 -2.6678 -2.3734 17 6 2.8989 -2.7405 -3.9017 18 7 1.5949 -3.2194 -4.3668 19 6 1.3612 -3.3632 -5.6863 20 8 2.2307 -3.0965 -6.4887 21 6 0.0195 -3.8553 -6.1647 22 1 -0.7583 -3.1671 -5.8339 23 6 0.0194 -3.9279 -7.6942 24 6 -1.4103 -4.1853 -8.1899 25 6 -1.9803 -5.3330 -7.3966 26 6 -3.0583 -6.0805 -7.6631 27 7 -3.1828 -6.9877 -6.6790 28 6 -2.2160 -6.8229 -5.8137 29 7 -1.4453 -5.8006 -6.2230 30 6 -0.2517 -5.2459 -5.5806 31 1 -0.4849 -0.8367 -0.0745 32 1 4.3740 0.6427 0.3712 33 1 3.5615 0.0728 1.8612 34 1 6.2311 -0.2705 1.5951 35 1 5.2408 -1.6093 2.2659 36 1 6.2423 -1.2313 -0.6129 37 1 6.2857 -2.7140 0.3938 38 1 4.4182 -1.1459 -2.2323 39 1 5.0479 -2.8098 -2.2864 40 1 2.7091 -3.6590 -1.9624 41 1 2.1217 -1.9807 -2.0417 42 1 3.0900 -1.7492 -4.3127 43 1 3.6773 -3.4276 -4.2334 44 1 0.8994 -3.4324 -3.7251 45 1 0.3820 -2.9848 -8.1031 46 1 0.6692 -4.7400 -8.0200 47 1 -2.0190 -3.2940 -8.0373 48 1 -1.3921 -4.4427 -9.2489 49 1 -3.7118 -5.9733 -8.5163 50 1 -2.0629 -7.4095 -4.9199 51 1 0.6024 -5.8952 -5.7731 52 1 -0.4184 -5.1659 -4.5064 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480823746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:05 Heat of formation + Delta-G solvation = 12.025787 kcal Electronic energy + Delta-G solvation = -30650.420646 eV Core-core repulsion = 26649.814005 eV Total energy + Delta-G solvation = -4000.606641 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.34554 -41.08724 -39.73161 -37.43996 -36.62988 -34.73698 -34.17141 -33.81099 -31.88125 -31.58018 -29.92713 -28.77053 -26.51982 -25.85973 -25.29291 -23.65911 -23.01200 -22.42039 -21.97366 -21.35808 -20.67779 -20.10833 -19.42996 -18.42428 -17.98537 -17.33970 -17.01320 -16.84645 -16.69769 -16.42183 -15.77720 -15.38104 -15.22236 -15.13760 -15.02970 -14.93479 -14.74768 -14.54654 -14.15260 -14.07008 -13.81169 -13.49343 -13.33917 -13.17292 -13.04426 -12.78911 -12.77655 -12.59273 -12.23314 -12.11339 -12.04048 -12.03394 -11.66675 -11.52161 -11.44396 -11.22724 -11.10577 -11.01545 -10.86075 -10.55306 -10.52818 -10.19506 -9.31393 -8.99005 -8.37979 -5.47178 1.07588 1.36331 1.44379 1.51629 1.70894 1.74456 2.08718 2.16903 2.57177 3.21163 3.23158 3.40932 3.43342 3.48023 3.71532 3.84771 3.89748 3.98795 4.02205 4.09568 4.13203 4.15079 4.19250 4.25566 4.31711 4.40991 4.43897 4.50642 4.56844 4.67888 4.75158 4.76352 4.79904 4.86574 4.89773 4.95241 5.01001 5.03066 5.09992 5.15635 5.19289 5.26126 5.36243 5.38263 5.38754 5.60254 5.63056 5.76838 5.84703 6.22892 6.29514 6.39058 6.93590 7.04871 7.08000 7.56489 8.29229 8.99022 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014519 B = 0.002339 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.053917 B =11967.265648 C =12480.719252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.069 4.069 3 Si 1.095 2.905 4 H -0.318 1.318 5 H -0.259 1.259 6 H -0.284 1.284 7 C -0.278 4.278 8 H 0.048 0.952 9 N -0.624 5.624 10 C 0.098 3.902 11 C -0.123 4.123 12 C -0.119 4.119 13 C 0.148 3.852 14 H 0.033 0.967 15 C -0.110 4.110 16 C -0.125 4.125 17 C 0.130 3.870 18 N -0.717 5.717 19 C 0.522 3.478 20 O -0.571 6.571 21 C -0.113 4.113 22 H 0.115 0.885 23 C -0.100 4.100 24 C -0.039 4.039 25 C -0.029 4.029 26 C -0.046 4.046 27 N -0.535 5.535 28 C 0.182 3.818 29 N -0.456 5.456 30 C 0.117 3.883 31 H 0.249 0.751 32 H 0.020 0.980 33 H 0.036 0.964 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.410 0.590 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.094 0.906 48 H 0.109 0.891 49 H 0.182 0.818 50 H 0.233 0.767 51 H 0.098 0.902 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.589 -10.276 -10.757 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.263 4.263 3 Si 0.925 3.075 4 H -0.248 1.248 5 H -0.185 1.185 6 H -0.210 1.210 7 C -0.408 4.408 8 H 0.065 0.935 9 N -0.351 5.351 10 C -0.027 4.027 11 C -0.161 4.161 12 C -0.157 4.157 13 C 0.043 3.957 14 H 0.051 0.949 15 C -0.150 4.150 16 C -0.162 4.162 17 C 0.006 3.994 18 N -0.368 5.368 19 C 0.308 3.692 20 O -0.451 6.451 21 C -0.135 4.135 22 H 0.133 0.867 23 C -0.138 4.138 24 C -0.077 4.077 25 C -0.143 4.143 26 C -0.193 4.193 27 N -0.254 5.254 28 C -0.100 4.100 29 N -0.140 5.140 30 C -0.006 4.006 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.246 0.754 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.112 0.888 48 H 0.127 0.873 49 H 0.199 0.801 50 H 0.249 0.751 51 H 0.116 0.884 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.482 -9.029 -11.098 15.321 hybrid contribution -0.229 -1.045 0.355 1.128 sum 5.253 -10.074 -10.743 15.636 Atomic orbital electron populations 1.71032 1.07026 1.28851 1.54397 1.26971 0.96547 1.03998 0.98806 0.83453 0.73035 0.72908 0.78146 1.24771 1.18481 1.21033 1.19751 0.82183 0.93034 1.45796 0.93454 1.45001 1.02462 1.30706 1.56898 1.22236 0.93709 0.92978 0.93761 1.22706 0.96233 0.99155 0.98018 1.22614 0.95115 1.00713 0.97216 1.21273 0.89983 0.92363 0.92115 0.94905 1.21796 0.96138 1.00240 0.96803 1.21831 1.00309 1.01722 0.92376 1.21324 0.84560 0.98705 0.94796 1.46117 1.16853 1.66630 1.07226 1.20564 0.89253 0.77277 0.82080 1.90699 1.47485 1.52032 1.54851 1.21581 0.95272 0.97583 0.99046 0.86668 1.21447 0.97119 1.03849 0.91427 1.20316 0.94148 0.93970 0.99308 1.21540 0.98936 1.02734 0.91104 1.22171 0.99591 0.96390 1.01125 1.70475 1.23923 1.25889 1.05093 1.25403 0.89673 0.92743 1.02216 1.45464 1.22891 1.26462 1.19146 1.21948 0.86361 0.93318 0.98933 0.94194 0.96232 0.94529 0.88932 0.91114 0.90469 0.88853 0.93867 0.90167 0.91941 0.91396 0.93598 0.91026 0.75386 0.89924 0.91431 0.88758 0.87307 0.80133 0.75135 0.88409 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.84 13.70 21.65 0.30 -58.55 16 2 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 3 Si 1.10 52.28 24.78 68.60 1.70 53.98 16 4 H -0.32 -16.03 7.11 99.48 0.71 -15.32 16 5 H -0.26 -11.13 5.61 99.48 0.56 -10.58 16 6 H -0.28 -12.92 7.09 99.48 0.71 -12.22 16 7 C -0.28 -14.34 7.68 84.03 0.65 -13.69 16 8 H 0.05 2.62 7.49 -2.91 -0.02 2.60 16 9 N -0.62 -26.94 2.85 -668.27 -1.90 -28.84 16 10 C 0.10 3.80 4.52 86.85 0.39 4.19 16 11 C -0.12 -3.44 7.08 31.99 0.23 -3.22 16 12 C -0.12 -3.06 6.47 31.78 0.21 -2.86 16 13 C 0.15 4.99 3.24 45.34 0.15 5.14 16 14 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 15 C -0.11 -3.38 4.72 30.60 0.14 -3.24 16 16 C -0.12 -3.93 4.68 30.60 0.14 -3.78 16 17 C 0.13 3.63 5.67 86.38 0.49 4.12 16 18 N -0.72 -17.38 5.46 -463.06 -2.53 -19.91 16 19 C 0.52 12.72 7.14 87.66 0.63 13.35 16 20 O -0.57 -18.13 15.81 -3.05 -0.05 -18.18 16 21 C -0.11 -2.02 2.52 -11.42 -0.03 -2.04 16 22 H 0.12 1.98 8.11 -2.39 -0.02 1.97 16 23 C -0.10 -1.73 4.69 30.80 0.14 -1.59 16 24 C -0.04 -0.57 6.31 30.02 0.19 -0.38 16 25 C -0.03 -0.55 6.57 40.73 0.27 -0.28 16 26 C -0.05 -1.02 11.84 83.30 0.99 -0.03 16 27 N -0.53 -13.40 11.27 -200.97 -2.26 -15.66 16 28 C 0.18 3.57 12.66 180.38 2.28 5.85 16 29 N -0.46 -8.34 3.13 -514.93 -1.61 -9.95 16 30 C 0.12 1.72 6.12 86.47 0.53 2.25 16 31 H 0.25 15.01 8.73 -92.71 -0.81 14.20 16 32 H 0.02 0.79 5.42 -2.39 -0.01 0.78 16 33 H 0.04 1.55 6.79 -2.39 -0.02 1.53 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.08 1.84 7.86 -2.39 -0.02 1.82 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 2.78 5.29 -2.39 -0.01 2.77 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.41 8.66 8.09 -92.71 -0.75 7.91 16 45 H 0.08 1.56 7.77 -2.38 -0.02 1.54 16 46 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 47 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 50 H 0.23 2.83 8.06 -2.91 -0.02 2.81 16 51 H 0.10 1.35 8.12 -2.39 -0.02 1.33 16 52 H 0.12 1.32 7.84 -2.39 -0.02 1.30 16 Total: -1.00 -73.53 399.51 1.47 -72.06 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -0.03 Total: 24.64 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 7.86 Total: 0.41 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -8.01 Total: -132.90 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.05 Total: -18.18 kcal Atomic # 14 Polarization: 52.28 SS G_CDS: 1.70 Total: 53.98 kcal Total: -73.53 1.47 -72.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480823746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.082 kcal (2) G-P(sol) polarization free energy of solvation -73.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds