Wall clock time and date at job start Wed Apr 1 2020 03:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48503 * 109.46884 * 264.81606 * 3 2 1 5 5 H 1.48498 * 109.47360 * 24.81618 * 3 2 1 6 6 H 1.48496 * 109.47286 * 144.81918 * 3 2 1 7 7 C 1.38811 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00131 * 341.34718 * 7 2 1 9 9 N 1.36936 * 119.99971 * 161.35181 * 7 2 1 10 10 C 1.47431 * 125.64724 * 342.89941 * 9 7 2 11 11 C 1.54905 * 104.83220 * 204.15388 * 10 9 7 12 12 C 1.55160 * 101.58082 * 322.99227 * 11 10 9 13 13 C 1.47020 * 125.64966 * 162.92881 * 9 7 2 14 14 H 1.09006 * 110.01071 * 59.42966 * 13 9 7 15 15 C 1.53000 * 109.88308 * 298.33480 * 13 9 7 16 16 C 1.52999 * 109.47150 * 68.03077 * 15 13 9 17 17 C 1.52999 * 109.47076 * 177.24831 * 16 15 13 18 18 N 1.46500 * 109.46892 * 179.97438 * 17 16 15 19 19 C 1.34784 * 119.99574 * 179.97438 * 18 17 16 20 20 O 1.21273 * 120.00073 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.99456 * 179.97438 * 19 18 17 22 22 H 1.08995 * 109.43443 * 300.09397 * 21 19 18 23 23 C 1.53117 * 109.39282 * 180.20938 * 21 19 18 24 24 C 1.53492 * 109.31058 * 170.03558 * 23 21 19 25 25 C 1.50707 * 108.05920 * 48.69378 * 24 23 21 26 26 C 1.33864 * 128.68331 * 164.22825 * 25 24 23 27 27 N 1.34430 * 107.79643 * 180.13101 * 26 25 24 28 28 C 1.30784 * 109.32588 * 0.02562 * 27 26 25 29 29 N 1.34412 * 108.54975 * 359.94390 * 28 27 26 30 30 C 1.46473 * 128.44206 * 180.17908 * 29 28 27 31 31 H 0.96998 * 119.99602 * 359.97438 * 1 2 3 32 32 H 1.08999 * 110.36168 * 85.31368 * 10 9 7 33 33 H 1.08998 * 110.45866 * 323.04056 * 10 9 7 34 34 H 1.09005 * 111.00713 * 204.91710 * 11 10 9 35 35 H 1.09003 * 111.00712 * 81.06415 * 11 10 9 36 36 H 1.09000 * 110.72023 * 277.13802 * 12 11 10 37 37 H 1.09003 * 110.87490 * 153.93705 * 12 11 10 38 38 H 1.09003 * 109.46781 * 308.02864 * 15 13 9 39 39 H 1.08999 * 109.46981 * 188.03137 * 15 13 9 40 40 H 1.08996 * 109.47096 * 57.24407 * 16 15 13 41 41 H 1.08998 * 109.46927 * 297.24536 * 16 15 13 42 42 H 1.08996 * 109.47504 * 59.99826 * 17 16 15 43 43 H 1.08998 * 109.47002 * 299.99659 * 17 16 15 44 44 H 0.97001 * 120.00359 * 359.97438 * 18 17 16 45 45 H 1.09006 * 109.49997 * 289.99204 * 23 21 19 46 46 H 1.09005 * 109.49551 * 50.08416 * 23 21 19 47 47 H 1.09003 * 109.74150 * 168.33231 * 24 23 21 48 48 H 1.08992 * 109.74321 * 289.00453 * 24 23 21 49 49 H 1.07998 * 126.10270 * 0.16160 * 26 25 24 50 50 H 1.07993 * 125.72427 * 180.21198 * 28 27 26 51 51 H 1.08998 * 109.59848 * 282.42179 * 30 29 28 52 52 H 1.08999 * 109.59902 * 42.90164 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6072 1.9832 -1.3944 5 1 1.3972 2.6818 0.5876 6 1 3.4887 1.4744 0.8066 7 6 2.0103 -1.2021 -0.0005 8 1 1.5129 -2.1130 0.2982 9 7 3.3257 -1.2331 -0.3798 10 6 4.0275 -0.1785 -1.1341 11 6 5.2069 -0.9050 -1.8274 12 6 5.6213 -1.9329 -0.7415 13 6 4.2720 -2.3237 -0.1026 14 1 3.9091 -3.2530 -0.5419 15 6 4.4416 -2.4940 1.4084 16 6 3.1382 -3.0213 2.0116 17 6 3.3289 -3.2567 3.5113 18 7 2.0807 -3.7610 4.0891 19 6 2.0126 -4.0419 5.4056 20 8 2.9848 -3.8776 6.1117 21 6 0.7284 -4.5601 6.0000 22 1 -0.0646 -3.8289 5.8436 23 6 0.9198 -4.7908 7.5015 24 6 -0.4422 -5.0766 8.1489 25 6 -1.1405 -6.1269 7.3239 26 6 -2.1965 -6.8819 7.6504 27 7 -2.4701 -7.6803 6.6041 28 6 -1.6158 -7.4421 5.6429 29 7 -0.7706 -6.4798 6.0507 30 6 0.3481 -5.8805 5.3195 31 1 -0.4849 0.8401 0.0004 32 1 4.4006 0.5887 -0.4557 33 1 3.3644 0.2635 -1.8777 34 1 6.0212 -0.2125 -2.0409 35 1 4.8760 -1.4084 -2.7359 36 1 6.2778 -1.4713 -0.0040 37 1 6.1006 -2.8020 -1.1922 38 1 4.6865 -1.5314 1.8573 39 1 5.2461 -3.2023 1.6060 40 1 2.8675 -3.9599 1.5280 41 1 2.3444 -2.2906 1.8566 42 1 3.5995 -2.3181 3.9950 43 1 4.1227 -3.9874 3.6664 44 1 1.3032 -3.8928 3.5242 45 1 1.5826 -5.6422 7.6572 46 1 1.3579 -3.9008 7.9534 47 1 -0.2972 -5.4429 9.1652 48 1 -1.0394 -4.1650 8.1677 49 1 -2.7334 -6.8541 8.5871 50 1 -1.5958 -7.9328 4.6811 51 1 1.2005 -6.5597 5.3346 52 1 0.0498 -5.6872 4.2892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480823747.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:10 Heat of formation + Delta-G solvation = 38.132086 kcal Electronic energy + Delta-G solvation = -30555.956941 eV Core-core repulsion = 26556.482354 eV Total energy + Delta-G solvation = -3999.474587 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.55786 -40.03922 -38.28719 -36.56614 -35.44843 -33.32905 -32.72988 -32.63063 -30.99264 -29.98968 -28.72555 -27.90617 -25.40249 -24.77332 -24.11027 -22.71744 -21.69018 -21.60693 -20.74214 -20.28831 -19.34096 -19.24234 -17.61590 -17.08270 -16.88696 -16.10506 -15.94375 -15.80446 -15.43635 -15.09963 -14.71915 -14.42756 -14.26751 -14.14019 -13.89083 -13.63482 -13.35022 -13.31190 -13.09487 -12.87206 -12.56206 -12.28150 -12.19476 -12.02542 -11.96767 -11.49467 -11.38824 -11.28664 -11.22534 -11.07098 -10.90770 -10.50007 -10.39906 -10.30982 -10.10911 -9.93447 -9.84012 -9.75531 -9.73231 -9.30043 -9.05741 -8.77357 -8.52895 -7.09393 -6.00574 -3.30770 1.84965 2.32126 2.58296 2.98499 3.08912 3.29189 3.42344 3.44195 3.98038 4.21593 4.28974 4.44349 4.48058 4.57649 4.78249 4.83088 4.87700 4.89274 5.03364 5.11271 5.14925 5.20130 5.26655 5.27455 5.42523 5.47597 5.49476 5.53521 5.56360 5.71700 5.74766 5.83957 5.89476 5.94030 6.05923 6.07509 6.15060 6.18953 6.22573 6.31739 6.38756 6.49983 6.54039 6.58355 6.63322 6.76105 6.95972 6.98126 7.00628 7.42950 7.65844 7.88101 8.08489 8.22976 8.75485 9.62749 10.14271 11.14961 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.002308 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.337827 B =12129.172144 C =12727.744323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.888 3.112 4 H -0.288 1.288 5 H -0.306 1.306 6 H -0.274 1.274 7 C -0.235 4.235 8 H 0.098 0.902 9 N -0.604 5.604 10 C 0.102 3.898 11 C -0.132 4.132 12 C -0.127 4.127 13 C 0.162 3.838 14 H 0.042 0.958 15 C -0.116 4.116 16 C -0.143 4.143 17 C 0.120 3.880 18 N -0.721 5.721 19 C 0.519 3.481 20 O -0.537 6.537 21 C -0.122 4.122 22 H 0.111 0.889 23 C -0.104 4.104 24 C -0.047 4.047 25 C -0.024 4.024 26 C -0.026 4.026 27 N -0.497 5.497 28 C 0.186 3.814 29 N -0.455 5.455 30 C 0.114 3.886 31 H 0.262 0.738 32 H 0.029 0.971 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.113 0.887 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.403 0.597 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.085 0.915 49 H 0.168 0.832 50 H 0.206 0.794 51 H 0.091 0.909 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.933 -10.914 9.974 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.719 3.281 4 H -0.215 1.215 5 H -0.235 1.235 6 H -0.200 1.200 7 C -0.362 4.362 8 H 0.115 0.885 9 N -0.330 5.330 10 C -0.023 4.023 11 C -0.170 4.170 12 C -0.166 4.166 13 C 0.055 3.945 14 H 0.060 0.940 15 C -0.156 4.156 16 C -0.180 4.180 17 C -0.003 4.003 18 N -0.371 5.371 19 C 0.303 3.697 20 O -0.414 6.414 21 C -0.144 4.144 22 H 0.129 0.871 23 C -0.142 4.142 24 C -0.085 4.085 25 C -0.138 4.138 26 C -0.173 4.173 27 N -0.215 5.215 28 C -0.096 4.096 29 N -0.138 5.138 30 C -0.009 4.009 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.131 0.869 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.238 0.762 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.103 0.897 49 H 0.186 0.814 50 H 0.222 0.778 51 H 0.109 0.891 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.874 -11.230 10.363 15.764 hybrid contribution 0.674 1.594 -0.400 1.776 sum 4.548 -9.636 9.963 14.588 Atomic orbital electron populations 1.69787 1.05396 1.26520 1.54062 1.24947 0.95160 0.97401 1.00500 0.86992 0.78821 0.84633 0.77625 1.21486 1.23453 1.20038 1.18612 0.82515 0.94898 1.40180 0.88505 1.44862 1.07490 1.17866 1.62816 1.22056 0.93318 0.92506 0.94417 1.22711 0.98089 0.98147 0.98063 1.22607 0.97204 0.98734 0.98007 1.20976 0.88852 0.92341 0.92323 0.94024 1.21883 0.95661 1.00158 0.97874 1.22159 1.01779 1.02804 0.91285 1.21527 0.84921 0.98816 0.95001 1.46155 1.16164 1.66163 1.08658 1.20133 0.89085 0.78120 0.82335 1.90711 1.37461 1.53054 1.60126 1.21668 0.97682 0.97283 0.97735 0.87147 1.21494 0.96864 1.04065 0.91808 1.20270 0.94647 0.95808 0.97773 1.21213 1.01235 1.04065 0.87312 1.21830 0.98326 0.97696 0.99439 1.70506 1.24898 1.25199 1.00905 1.24845 0.90008 0.93620 1.01132 1.45366 1.25121 1.30240 1.13105 1.21901 0.88545 0.94237 0.96205 0.92766 0.95391 0.92439 0.91949 0.91435 0.91734 0.91766 0.92172 0.93378 0.92485 0.86867 0.91703 0.92262 0.76209 0.90805 0.89274 0.89059 0.89712 0.81429 0.77783 0.89069 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.54 13.97 55.49 0.78 -25.77 16 2 C 0.02 0.49 5.47 -17.43 -0.10 0.40 16 3 Si 0.89 21.89 24.23 -169.99 -4.12 17.77 16 4 H -0.29 -6.94 6.44 56.52 0.36 -6.57 16 5 H -0.31 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.27 -6.65 6.24 56.52 0.35 -6.29 16 7 C -0.24 -5.95 8.37 -15.06 -0.13 -6.07 16 8 H 0.10 2.52 6.66 -52.49 -0.35 2.17 16 9 N -0.60 -13.23 2.97 -162.58 -0.48 -13.72 16 10 C 0.10 2.11 4.67 -2.53 -0.01 2.10 16 11 C -0.13 -2.10 7.08 -24.58 -0.17 -2.28 16 12 C -0.13 -1.89 6.48 -24.90 -0.16 -2.05 16 13 C 0.16 2.84 3.23 -66.96 -0.22 2.62 16 14 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 15 C -0.12 -1.82 4.72 -26.73 -0.13 -1.95 16 16 C -0.14 -2.19 4.65 -26.73 -0.12 -2.31 16 17 C 0.12 1.66 5.67 -4.04 -0.02 1.64 16 18 N -0.72 -8.64 5.46 -60.30 -0.33 -8.97 16 19 C 0.52 6.34 7.14 -10.98 -0.08 6.26 16 20 O -0.54 -8.47 15.81 5.56 0.09 -8.39 16 21 C -0.12 -1.12 2.52 -91.54 -0.23 -1.35 16 22 H 0.11 0.99 8.11 -51.93 -0.42 0.56 16 23 C -0.10 -0.93 4.68 -26.42 -0.12 -1.06 16 24 C -0.05 -0.36 6.31 -27.62 -0.17 -0.54 16 25 C -0.02 -0.24 6.57 -81.73 -0.54 -0.78 16 26 C -0.03 -0.29 11.84 -17.95 -0.21 -0.50 16 27 N -0.50 -6.29 11.27 -14.87 -0.17 -6.46 16 28 C 0.19 1.91 12.66 -90.71 -1.15 0.76 16 29 N -0.45 -4.40 3.13 -114.06 -0.36 -4.75 16 30 C 0.11 0.91 6.13 -3.89 -0.02 0.89 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.03 0.61 5.40 -51.93 -0.28 0.33 16 33 H 0.06 1.29 6.20 -51.93 -0.32 0.97 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.11 2.16 4.94 -51.93 -0.26 1.91 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.40 4.19 8.11 -40.82 -0.33 3.86 16 45 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 46 H 0.09 0.85 7.77 -51.93 -0.40 0.45 16 47 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 50 H 0.21 1.40 8.06 -52.49 -0.42 0.98 16 51 H 0.09 0.70 8.12 -51.93 -0.42 0.27 16 52 H 0.10 0.64 7.85 -51.93 -0.41 0.23 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -32.92 397.95 -10.92 -43.85 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -8.74 Total: 4.66 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -3.59 Total: -4.22 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.56 Total: -59.67 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.12 Total: 17.77 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.92 -10.92 -43.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480823747.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.978 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds