Wall clock time and date at job start Wed Apr 1 2020 03:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48503 * 109.46884 * 264.81606 * 3 2 1 5 5 H 1.48498 * 109.47360 * 24.81618 * 3 2 1 6 6 H 1.48496 * 109.47286 * 144.81918 * 3 2 1 7 7 C 1.38811 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00131 * 341.34718 * 7 2 1 9 9 N 1.36936 * 119.99971 * 161.35181 * 7 2 1 10 10 C 1.47431 * 125.64724 * 342.89941 * 9 7 2 11 11 C 1.54905 * 104.83220 * 204.15388 * 10 9 7 12 12 C 1.55160 * 101.58082 * 322.99227 * 11 10 9 13 13 C 1.47020 * 125.64966 * 162.92881 * 9 7 2 14 14 H 1.09006 * 110.01071 * 59.42966 * 13 9 7 15 15 C 1.53000 * 109.88308 * 298.33480 * 13 9 7 16 16 C 1.52999 * 109.47150 * 68.03077 * 15 13 9 17 17 C 1.52999 * 109.47076 * 177.24831 * 16 15 13 18 18 N 1.46500 * 109.46892 * 179.97438 * 17 16 15 19 19 C 1.34784 * 119.99574 * 179.97438 * 18 17 16 20 20 O 1.21273 * 120.00073 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.99456 * 179.97438 * 19 18 17 22 22 H 1.08995 * 109.43443 * 300.09397 * 21 19 18 23 23 C 1.53117 * 109.39282 * 180.20938 * 21 19 18 24 24 C 1.53492 * 109.31058 * 170.03558 * 23 21 19 25 25 C 1.50707 * 108.05920 * 48.69378 * 24 23 21 26 26 C 1.33864 * 128.68331 * 164.22825 * 25 24 23 27 27 N 1.34430 * 107.79643 * 180.13101 * 26 25 24 28 28 C 1.30784 * 109.32588 * 0.02562 * 27 26 25 29 29 N 1.34412 * 108.54975 * 359.94390 * 28 27 26 30 30 C 1.46473 * 128.44206 * 180.17908 * 29 28 27 31 31 H 0.96998 * 119.99602 * 359.97438 * 1 2 3 32 32 H 1.08999 * 110.36168 * 85.31368 * 10 9 7 33 33 H 1.08998 * 110.45866 * 323.04056 * 10 9 7 34 34 H 1.09005 * 111.00713 * 204.91710 * 11 10 9 35 35 H 1.09003 * 111.00712 * 81.06415 * 11 10 9 36 36 H 1.09000 * 110.72023 * 277.13802 * 12 11 10 37 37 H 1.09003 * 110.87490 * 153.93705 * 12 11 10 38 38 H 1.09003 * 109.46781 * 308.02864 * 15 13 9 39 39 H 1.08999 * 109.46981 * 188.03137 * 15 13 9 40 40 H 1.08996 * 109.47096 * 57.24407 * 16 15 13 41 41 H 1.08998 * 109.46927 * 297.24536 * 16 15 13 42 42 H 1.08996 * 109.47504 * 59.99826 * 17 16 15 43 43 H 1.08998 * 109.47002 * 299.99659 * 17 16 15 44 44 H 0.97001 * 120.00359 * 359.97438 * 18 17 16 45 45 H 1.09006 * 109.49997 * 289.99204 * 23 21 19 46 46 H 1.09005 * 109.49551 * 50.08416 * 23 21 19 47 47 H 1.09003 * 109.74150 * 168.33231 * 24 23 21 48 48 H 1.08992 * 109.74321 * 289.00453 * 24 23 21 49 49 H 1.07998 * 126.10270 * 0.16160 * 26 25 24 50 50 H 1.07993 * 125.72427 * 180.21198 * 28 27 26 51 51 H 1.08998 * 109.59848 * 282.42179 * 30 29 28 52 52 H 1.08999 * 109.59902 * 42.90164 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6072 1.9832 -1.3944 5 1 1.3972 2.6818 0.5876 6 1 3.4887 1.4744 0.8066 7 6 2.0103 -1.2021 -0.0005 8 1 1.5129 -2.1130 0.2982 9 7 3.3257 -1.2331 -0.3798 10 6 4.0275 -0.1785 -1.1341 11 6 5.2069 -0.9050 -1.8274 12 6 5.6213 -1.9329 -0.7415 13 6 4.2720 -2.3237 -0.1026 14 1 3.9091 -3.2530 -0.5419 15 6 4.4416 -2.4940 1.4084 16 6 3.1382 -3.0213 2.0116 17 6 3.3289 -3.2567 3.5113 18 7 2.0807 -3.7610 4.0891 19 6 2.0126 -4.0419 5.4056 20 8 2.9848 -3.8776 6.1117 21 6 0.7284 -4.5601 6.0000 22 1 -0.0646 -3.8289 5.8436 23 6 0.9198 -4.7908 7.5015 24 6 -0.4422 -5.0766 8.1489 25 6 -1.1405 -6.1269 7.3239 26 6 -2.1965 -6.8819 7.6504 27 7 -2.4701 -7.6803 6.6041 28 6 -1.6158 -7.4421 5.6429 29 7 -0.7706 -6.4798 6.0507 30 6 0.3481 -5.8805 5.3195 31 1 -0.4849 0.8401 0.0004 32 1 4.4006 0.5887 -0.4557 33 1 3.3644 0.2635 -1.8777 34 1 6.0212 -0.2125 -2.0409 35 1 4.8760 -1.4084 -2.7359 36 1 6.2778 -1.4713 -0.0040 37 1 6.1006 -2.8020 -1.1922 38 1 4.6865 -1.5314 1.8573 39 1 5.2461 -3.2023 1.6060 40 1 2.8675 -3.9599 1.5280 41 1 2.3444 -2.2906 1.8566 42 1 3.5995 -2.3181 3.9950 43 1 4.1227 -3.9874 3.6664 44 1 1.3032 -3.8928 3.5242 45 1 1.5826 -5.6422 7.6572 46 1 1.3579 -3.9008 7.9534 47 1 -0.2972 -5.4429 9.1652 48 1 -1.0394 -4.1650 8.1677 49 1 -2.7334 -6.8541 8.5871 50 1 -1.5958 -7.9328 4.6811 51 1 1.2005 -6.5597 5.3346 52 1 0.0498 -5.6872 4.2892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480823747.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:09 Heat of formation + Delta-G solvation = 18.038550 kcal Electronic energy + Delta-G solvation = -30556.828262 eV Core-core repulsion = 26556.482354 eV Total energy + Delta-G solvation = -4000.345908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.31368 -41.04583 -39.75672 -37.40408 -36.59318 -34.58235 -34.14230 -33.78513 -31.85561 -31.72140 -29.91463 -28.74199 -26.58253 -26.05632 -25.38110 -23.66593 -23.04159 -22.39170 -21.95052 -21.33692 -20.73594 -20.07682 -18.81797 -18.35699 -17.94400 -17.46678 -17.03700 -16.81257 -16.78624 -16.40909 -15.76646 -15.20974 -15.10493 -15.05418 -14.95085 -14.90400 -14.71857 -14.52242 -14.32709 -14.06861 -13.80580 -13.64274 -13.43662 -13.11553 -13.01923 -12.76111 -12.73664 -12.59518 -12.41010 -12.20256 -12.07760 -12.00429 -11.81832 -11.55748 -11.45283 -11.35398 -11.09932 -10.99533 -10.83131 -10.71486 -10.52050 -10.14229 -9.28789 -8.95147 -8.08595 -5.31995 1.10470 1.29865 1.39004 1.40574 1.44492 1.78318 2.13272 2.19689 2.45750 3.15434 3.24787 3.37585 3.47337 3.52105 3.74409 3.86442 3.93065 3.96944 4.05142 4.12765 4.15829 4.19395 4.23199 4.25657 4.34654 4.43854 4.47153 4.53014 4.59968 4.68717 4.78330 4.79496 4.82713 4.86104 4.90988 4.97250 5.02690 5.03363 5.12391 5.16675 5.19657 5.28514 5.39026 5.40314 5.41015 5.62773 5.65045 5.79324 5.82808 6.19496 6.26182 6.44614 6.85690 7.09950 7.10951 7.65102 8.23148 9.10378 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.002308 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.337827 B =12129.172144 C =12727.744323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.043 4.043 3 Si 0.934 3.066 4 H -0.283 1.283 5 H -0.322 1.322 6 H -0.269 1.269 7 C -0.198 4.198 8 H 0.085 0.915 9 N -0.621 5.621 10 C 0.091 3.909 11 C -0.122 4.122 12 C -0.118 4.118 13 C 0.151 3.849 14 H 0.045 0.955 15 C -0.112 4.112 16 C -0.131 4.131 17 C 0.130 3.870 18 N -0.717 5.717 19 C 0.522 3.478 20 O -0.573 6.573 21 C -0.113 4.113 22 H 0.116 0.884 23 C -0.101 4.101 24 C -0.039 4.039 25 C -0.028 4.028 26 C -0.047 4.047 27 N -0.536 5.536 28 C 0.182 3.818 29 N -0.456 5.456 30 C 0.116 3.884 31 H 0.255 0.745 32 H 0.020 0.980 33 H 0.033 0.967 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.041 0.959 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.412 0.588 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.107 0.893 48 H 0.094 0.906 49 H 0.181 0.819 50 H 0.233 0.767 51 H 0.098 0.902 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.299 -12.241 9.588 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.236 4.236 3 Si 0.766 3.234 4 H -0.210 1.210 5 H -0.251 1.251 6 H -0.195 1.195 7 C -0.327 4.327 8 H 0.102 0.898 9 N -0.347 5.347 10 C -0.034 4.034 11 C -0.160 4.160 12 C -0.156 4.156 13 C 0.046 3.954 14 H 0.063 0.937 15 C -0.151 4.151 16 C -0.169 4.169 17 C 0.006 3.994 18 N -0.368 5.368 19 C 0.308 3.692 20 O -0.452 6.452 21 C -0.135 4.135 22 H 0.134 0.866 23 C -0.139 4.139 24 C -0.078 4.078 25 C -0.143 4.143 26 C -0.194 4.194 27 N -0.255 5.255 28 C -0.100 4.100 29 N -0.139 5.139 30 C -0.006 4.006 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.248 0.752 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.126 0.874 48 H 0.112 0.888 49 H 0.198 0.802 50 H 0.249 0.751 51 H 0.116 0.884 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.293 -12.572 9.958 17.228 hybrid contribution 0.003 1.900 -0.295 1.922 sum 6.296 -10.673 9.663 15.713 Atomic orbital electron populations 1.69892 1.06640 1.26371 1.58021 1.25421 0.95614 0.99827 1.02753 0.86226 0.77612 0.81858 0.77658 1.20951 1.25132 1.19496 1.18682 0.83969 0.93930 1.36108 0.89785 1.45087 1.07213 1.19370 1.63048 1.22142 0.94672 0.92651 0.93956 1.22681 0.96669 0.98494 0.98129 1.22625 0.95598 0.99672 0.97659 1.21276 0.89540 0.90881 0.93738 0.93741 1.21823 0.96765 1.00186 0.96375 1.21933 1.00384 1.02034 0.92510 1.21308 0.86019 0.98308 0.93726 1.46116 1.15998 1.65718 1.08931 1.20549 0.89525 0.77214 0.81892 1.90696 1.39012 1.54641 1.60874 1.21598 0.95997 0.98064 0.97843 0.86578 1.21449 0.97375 1.03411 0.91639 1.20306 0.93673 0.95662 0.98112 1.21524 1.01025 1.04121 0.87632 1.22164 0.99182 0.98075 0.99939 1.70476 1.26404 1.26540 1.02053 1.25414 0.89384 0.93463 1.01704 1.45471 1.25263 1.30122 1.13080 1.21984 0.88413 0.93443 0.96749 0.93554 0.96281 0.94859 0.89183 0.90813 0.90627 0.88414 0.93989 0.89892 0.91185 0.90972 0.93716 0.91069 0.75189 0.91482 0.89997 0.87431 0.88772 0.80226 0.75071 0.88377 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.82 13.97 21.65 0.30 -57.52 16 2 C -0.04 -2.39 5.47 84.86 0.46 -1.93 16 3 Si 0.93 46.27 24.23 68.60 1.66 47.93 16 4 H -0.28 -13.53 6.44 99.48 0.64 -12.89 16 5 H -0.32 -16.56 7.11 99.48 0.71 -15.85 16 6 H -0.27 -12.85 6.24 99.48 0.62 -12.23 16 7 C -0.20 -10.11 8.37 84.03 0.70 -9.41 16 8 H 0.08 4.45 6.66 -2.91 -0.02 4.43 16 9 N -0.62 -26.55 2.97 -668.27 -1.99 -28.53 16 10 C 0.09 3.61 4.67 86.85 0.41 4.01 16 11 C -0.12 -3.44 7.08 31.99 0.23 -3.21 16 12 C -0.12 -2.95 6.48 31.78 0.21 -2.75 16 13 C 0.15 4.87 3.23 45.34 0.15 5.02 16 14 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 15 C -0.11 -3.24 4.72 30.59 0.14 -3.10 16 16 C -0.13 -3.84 4.65 30.59 0.14 -3.70 16 17 C 0.13 3.43 5.67 86.38 0.49 3.92 16 18 N -0.72 -16.39 5.46 -463.06 -2.53 -18.92 16 19 C 0.52 12.24 7.14 87.66 0.63 12.86 16 20 O -0.57 -17.75 15.81 -3.01 -0.05 -17.80 16 21 C -0.11 -1.94 2.52 -11.39 -0.03 -1.97 16 22 H 0.12 1.91 8.11 -2.39 -0.02 1.89 16 23 C -0.10 -1.69 4.68 30.80 0.14 -1.55 16 24 C -0.04 -0.56 6.31 30.02 0.19 -0.37 16 25 C -0.03 -0.54 6.57 40.73 0.27 -0.27 16 26 C -0.05 -1.02 11.84 83.30 0.99 -0.04 16 27 N -0.54 -13.28 11.27 -200.97 -2.26 -15.55 16 28 C 0.18 3.51 12.66 180.38 2.28 5.79 16 29 N -0.46 -8.12 3.13 -514.77 -1.61 -9.73 16 30 C 0.12 1.63 6.13 86.49 0.53 2.16 16 31 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.02 0.81 5.40 -2.39 -0.01 0.80 16 33 H 0.03 1.48 6.20 -2.39 -0.01 1.46 16 34 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 1.76 7.85 -2.39 -0.02 1.75 16 37 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 2.76 4.94 -2.39 -0.01 2.75 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.41 8.06 8.11 -92.71 -0.75 7.30 16 45 H 0.07 1.22 8.12 -2.38 -0.02 1.20 16 46 H 0.08 1.52 7.77 -2.38 -0.02 1.50 16 47 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 50 H 0.23 2.73 8.06 -2.91 -0.02 2.71 16 51 H 0.10 1.28 8.12 -2.39 -0.02 1.26 16 52 H 0.12 1.23 7.85 -2.39 -0.02 1.21 16 Total: -1.00 -73.68 397.95 1.46 -72.21 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.01 Total: 22.41 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 7.93 Total: 5.49 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -8.09 Total: -130.25 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.05 Total: -17.80 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.66 Total: 47.93 kcal Total: -73.68 1.46 -72.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480823747.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.251 kcal (2) G-P(sol) polarization free energy of solvation -73.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds