Wall clock time and date at job start Wed Apr 1 2020 03:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00182 * 2 1 4 4 H 1.48500 * 109.46701 * 269.99683 * 3 2 1 5 5 H 1.48493 * 109.47214 * 29.99586 * 3 2 1 6 6 H 1.48499 * 109.47169 * 150.00256 * 3 2 1 7 7 C 1.38815 * 119.99654 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00010 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.47752 * 125.82013 * 346.85716 * 9 7 2 11 11 C 1.54911 * 104.83784 * 204.24616 * 10 9 7 12 12 C 1.55159 * 101.58245 * 322.90631 * 11 10 9 13 13 C 1.47019 * 125.65040 * 166.85172 * 9 7 2 14 14 H 1.08999 * 109.87893 * 59.32610 * 13 9 7 15 15 C 1.53001 * 109.88286 * 298.31700 * 13 9 7 16 16 C 1.52998 * 109.47032 * 176.67833 * 15 13 9 17 17 C 1.53001 * 109.47202 * 185.08445 * 16 15 13 18 18 N 1.46501 * 109.47365 * 179.97438 * 17 16 15 19 19 C 1.34777 * 120.00264 * 179.97438 * 18 17 16 20 20 O 1.21279 * 119.99610 * 0.02562 * 19 18 17 21 21 C 1.50700 * 120.00109 * 179.97438 * 19 18 17 22 22 H 1.09003 * 109.42819 * 60.00526 * 21 19 18 23 23 C 1.53116 * 109.42893 * 179.90424 * 21 19 18 24 24 C 1.53513 * 109.29444 * 190.03180 * 23 21 19 25 25 C 1.50719 * 108.02308 * 311.21004 * 24 23 21 26 26 C 1.33853 * 128.67817 * 195.87613 * 25 24 23 27 27 N 1.34426 * 107.79699 * 179.85201 * 26 25 24 28 28 C 1.30784 * 109.32174 * 0.02562 * 27 26 25 29 29 N 1.34409 * 108.55106 * 0.03701 * 28 27 26 30 30 C 1.46475 * 128.44315 * 179.87732 * 29 28 27 31 31 H 0.97004 * 119.99841 * 0.02562 * 1 2 3 32 32 H 1.09004 * 110.43323 * 85.37107 * 10 9 7 33 33 H 1.08993 * 110.38192 * 323.09859 * 10 9 7 34 34 H 1.08996 * 111.00232 * 204.83074 * 11 10 9 35 35 H 1.08999 * 111.03498 * 80.99618 * 11 10 9 36 36 H 1.09001 * 110.71993 * 277.13522 * 12 11 10 37 37 H 1.09001 * 110.87114 * 153.93595 * 12 11 10 38 38 H 1.08996 * 109.47231 * 56.67960 * 15 13 9 39 39 H 1.08997 * 109.46894 * 296.67631 * 15 13 9 40 40 H 1.09004 * 109.47640 * 65.08375 * 16 15 13 41 41 H 1.08998 * 109.47230 * 305.08330 * 16 15 13 42 42 H 1.08998 * 109.46934 * 300.00066 * 17 16 15 43 43 H 1.09001 * 109.47340 * 60.00065 * 17 16 15 44 44 H 0.96998 * 119.99923 * 0.02562 * 18 17 16 45 45 H 1.08998 * 109.49976 * 309.93322 * 23 21 19 46 46 H 1.09001 * 109.49429 * 70.03450 * 23 21 19 47 47 H 1.09004 * 109.73451 * 191.60397 * 24 23 21 48 48 H 1.08999 * 109.83229 * 70.88385 * 24 23 21 49 49 H 1.07999 * 126.10747 * 359.83694 * 26 25 24 50 50 H 1.07995 * 125.72567 * 180.02562 * 28 27 26 51 51 H 1.08996 * 109.60025 * 77.51650 * 30 29 28 52 52 H 1.09004 * 109.59810 * 317.04594 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1174 -2.5535 0.2724 11 6 -0.2636 -4.0156 0.7630 12 6 0.7705 -4.7492 -0.1315 13 6 1.9046 -3.7119 -0.2707 14 1 2.6934 -3.9262 0.4503 15 6 2.4733 -3.7501 -1.6906 16 6 3.1463 -5.1024 -1.9341 17 6 3.8244 -5.0949 -3.3057 18 7 4.4694 -6.3895 -3.5387 19 6 5.1326 -6.6144 -4.6902 20 8 5.1958 -5.7449 -5.5333 21 6 5.7965 -7.9459 -4.9296 22 1 5.0462 -8.7360 -4.8987 23 6 6.4720 -7.9385 -6.3037 24 6 6.9279 -9.3622 -6.6525 25 6 7.6753 -9.9163 -5.4667 26 6 8.4863 -10.9797 -5.4115 27 7 8.9300 -11.0929 -4.1476 28 6 8.4178 -10.1331 -3.4217 29 7 7.6290 -9.3783 -4.2057 30 6 6.8447 -8.1965 -3.8400 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6964 -2.3992 -0.6382 33 1 -0.4395 -1.8591 1.0483 34 1 -1.2713 -4.3894 0.5823 35 1 0.0001 -4.1029 1.8170 36 1 0.3405 -4.9835 -1.1053 37 1 1.1331 -5.6540 0.3561 38 1 3.2066 -2.9526 -1.8098 39 1 1.6656 -3.6116 -2.4093 40 1 2.3960 -5.8924 -1.9041 41 1 3.8932 -5.2811 -1.1606 42 1 3.0775 -4.9162 -4.0792 43 1 4.5748 -4.3049 -3.3357 44 1 4.4185 -7.0850 -2.8645 45 1 5.7640 -7.5894 -7.0553 46 1 7.3360 -7.2743 -6.2807 47 1 7.5848 -9.3357 -7.5220 48 1 6.0603 -9.9866 -6.8655 49 1 8.7389 -11.6309 -6.2352 50 1 8.5982 -9.9739 -2.3688 51 1 7.5027 -7.3312 -3.7606 52 1 6.3469 -8.3689 -2.8858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480823749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:14 Heat of formation + Delta-G solvation = 30.363975 kcal Electronic energy + Delta-G solvation = -29815.062615 eV Core-core repulsion = 25815.251178 eV Total energy + Delta-G solvation = -3999.811437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.74130 -40.27194 -37.92405 -36.75331 -35.67585 -33.51972 -33.04060 -32.26511 -31.12835 -29.43998 -28.53379 -27.82795 -25.45188 -24.81810 -24.14011 -22.85509 -21.80674 -21.65150 -20.69670 -20.15473 -19.53144 -19.18804 -17.81921 -17.29130 -16.79375 -16.25579 -16.02076 -15.87303 -15.21861 -14.95445 -14.62875 -14.52626 -14.40031 -14.26839 -14.07418 -13.85305 -13.76702 -13.52447 -12.93547 -12.57213 -12.33665 -12.18933 -12.10966 -11.96260 -11.77873 -11.69639 -11.51064 -11.46529 -11.07661 -10.86384 -10.78702 -10.63459 -10.36790 -10.15113 -10.08851 -10.02838 -9.93329 -9.80776 -9.64878 -9.63241 -9.32993 -8.70345 -8.60242 -6.79980 -5.75269 -3.10257 1.67037 2.10136 2.38372 2.79568 2.84196 3.37851 3.43330 3.44730 3.76889 3.99701 4.06877 4.26400 4.39578 4.47175 4.56054 4.63215 4.67577 4.85423 4.90901 4.95974 5.06284 5.08439 5.29157 5.32754 5.36371 5.41558 5.53791 5.55983 5.56937 5.66857 5.67981 5.79614 5.86295 5.94304 5.97120 6.02320 6.17507 6.25625 6.30000 6.36995 6.37318 6.52919 6.65180 6.68876 6.80209 6.90268 7.11540 7.15542 7.53681 7.60537 7.71115 7.79339 7.84827 8.27878 9.18897 9.80826 10.49934 11.36813 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.001786 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.097964 B =15677.534716 C =16212.178461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.074 0.926 9 N -0.597 5.597 10 C 0.171 3.829 11 C -0.150 4.150 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.030 0.970 15 C -0.122 4.122 16 C -0.127 4.127 17 C 0.116 3.884 18 N -0.726 5.726 19 C 0.517 3.483 20 O -0.528 6.528 21 C -0.120 4.120 22 H 0.108 0.892 23 C -0.106 4.106 24 C -0.046 4.046 25 C -0.025 4.025 26 C -0.025 4.025 27 N -0.496 5.496 28 C 0.185 3.815 29 N -0.456 5.456 30 C 0.114 3.886 31 H 0.252 0.748 32 H 0.022 0.978 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.399 0.601 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.092 0.908 48 H 0.084 0.916 49 H 0.169 0.831 50 H 0.206 0.794 51 H 0.092 0.908 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.743 -21.355 -8.648 25.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.046 3.954 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.166 4.166 17 C -0.006 4.006 18 N -0.378 5.378 19 C 0.301 3.699 20 O -0.403 6.403 21 C -0.142 4.142 22 H 0.126 0.874 23 C -0.144 4.144 24 C -0.085 4.085 25 C -0.139 4.139 26 C -0.172 4.172 27 N -0.214 5.214 28 C -0.097 4.097 29 N -0.140 5.140 30 C -0.009 4.009 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.233 0.767 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.111 0.889 48 H 0.102 0.898 49 H 0.186 0.814 50 H 0.222 0.778 51 H 0.111 0.889 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.185 -20.928 -8.876 25.335 hybrid contribution -0.166 1.226 0.127 1.244 sum 11.019 -19.702 -8.748 24.210 Atomic orbital electron populations 1.69933 1.04964 1.25093 1.56532 1.24881 0.95676 0.97752 1.02007 0.86172 0.78683 0.83617 0.77618 1.21546 1.21704 1.20681 1.18954 0.90289 0.82340 1.43836 0.90796 1.44615 1.05311 1.00966 1.81175 1.21485 0.84991 0.90221 0.98660 1.23007 0.97395 0.99759 0.98728 1.22585 0.97140 0.97074 0.99405 1.20912 0.93800 0.87016 0.92795 0.95224 1.22033 1.00064 0.94198 0.99941 1.21841 0.99685 1.00343 0.94691 1.21573 0.96942 0.83869 0.98260 1.46177 1.54864 1.17663 1.19077 1.20169 0.78987 0.88625 0.82078 1.90757 1.59974 1.45533 1.44068 1.21647 0.98122 0.97179 0.97260 0.87359 1.21514 1.01526 0.96603 0.94762 1.20278 0.99263 0.95236 0.93677 1.21221 1.06145 0.99309 0.87200 1.21851 1.00854 0.99020 0.95449 1.70516 1.25017 1.22305 1.03552 1.24854 0.95237 0.90735 0.98833 1.45363 1.36189 1.23367 1.09059 1.21879 0.93461 0.87165 0.98399 0.93728 0.95951 0.90970 0.92555 0.92473 0.92106 0.92685 0.91684 0.92178 0.91670 0.91740 0.91261 0.91186 0.76709 0.89188 0.90633 0.88939 0.89757 0.81361 0.77776 0.88942 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.54 55.49 0.58 -26.02 16 2 C -0.01 -0.18 5.47 -17.43 -0.10 -0.28 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.08 9.75 -15.06 -0.15 -6.23 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.60 -14.58 3.14 -162.31 -0.51 -15.09 16 10 C 0.17 4.06 5.46 -2.35 -0.01 4.04 16 11 C -0.15 -2.74 7.09 -24.58 -0.17 -2.91 16 12 C -0.12 -2.00 5.61 -24.90 -0.14 -2.14 16 13 C 0.16 3.09 3.18 -66.96 -0.21 2.87 16 14 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 15 C -0.12 -2.02 4.69 -26.73 -0.13 -2.15 16 16 C -0.13 -1.45 5.07 -26.73 -0.14 -1.59 16 17 C 0.12 1.30 5.67 -4.04 -0.02 1.28 16 18 N -0.73 -6.03 5.46 -60.29 -0.33 -6.36 16 19 C 0.52 4.90 7.14 -10.99 -0.08 4.82 16 20 O -0.53 -7.37 15.81 5.56 0.09 -7.28 16 21 C -0.12 -0.76 2.52 -91.58 -0.23 -0.99 16 22 H 0.11 0.56 8.11 -51.93 -0.42 0.14 16 23 C -0.11 -0.73 4.69 -26.41 -0.12 -0.85 16 24 C -0.05 -0.26 6.31 -27.61 -0.17 -0.44 16 25 C -0.02 -0.20 6.57 -81.73 -0.54 -0.73 16 26 C -0.02 -0.23 11.84 -17.96 -0.21 -0.44 16 27 N -0.50 -5.33 11.27 -14.88 -0.17 -5.50 16 28 C 0.19 1.51 12.66 -90.71 -1.15 0.36 16 29 N -0.46 -3.36 3.13 -114.10 -0.36 -3.72 16 30 C 0.11 0.61 6.12 -3.92 -0.02 0.59 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.02 0.58 8.10 -51.93 -0.42 0.15 16 33 H 0.07 1.92 6.83 -51.93 -0.35 1.57 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.94 7.79 -51.93 -0.40 0.53 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.20 7.89 -51.93 -0.41 0.79 16 39 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 40 H 0.06 0.67 7.57 -51.93 -0.39 0.28 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.40 2.12 8.10 -40.82 -0.33 1.79 16 45 H 0.09 0.68 7.77 -51.93 -0.40 0.27 16 46 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 50 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 51 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 52 H 0.10 0.30 7.85 -51.93 -0.41 -0.10 16 LS Contribution 409.93 15.07 6.18 6.18 Total: -1.00 -34.31 409.93 -12.14 -46.44 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -9.00 Total: -0.69 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -3.59 Total: -4.78 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.78 Total: -56.68 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.09 Total: -7.28 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.31 -12.14 -46.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480823749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.808 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds