Wall clock time and date at job start Wed Apr 1 2020 03:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00182 * 2 1 4 4 H 1.48500 * 109.46701 * 269.99683 * 3 2 1 5 5 H 1.48493 * 109.47214 * 29.99586 * 3 2 1 6 6 H 1.48499 * 109.47169 * 150.00256 * 3 2 1 7 7 C 1.38815 * 119.99654 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00010 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.47752 * 125.82013 * 346.85716 * 9 7 2 11 11 C 1.54911 * 104.83784 * 204.24616 * 10 9 7 12 12 C 1.55159 * 101.58245 * 322.90631 * 11 10 9 13 13 C 1.47019 * 125.65040 * 166.85172 * 9 7 2 14 14 H 1.08999 * 109.87893 * 59.32610 * 13 9 7 15 15 C 1.53001 * 109.88286 * 298.31700 * 13 9 7 16 16 C 1.52998 * 109.47032 * 176.67833 * 15 13 9 17 17 C 1.53001 * 109.47202 * 185.08445 * 16 15 13 18 18 N 1.46501 * 109.47365 * 179.97438 * 17 16 15 19 19 C 1.34777 * 120.00264 * 179.97438 * 18 17 16 20 20 O 1.21279 * 119.99610 * 0.02562 * 19 18 17 21 21 C 1.50700 * 120.00109 * 179.97438 * 19 18 17 22 22 H 1.09003 * 109.42819 * 60.00526 * 21 19 18 23 23 C 1.53116 * 109.42893 * 179.90424 * 21 19 18 24 24 C 1.53513 * 109.29444 * 190.03180 * 23 21 19 25 25 C 1.50719 * 108.02308 * 311.21004 * 24 23 21 26 26 C 1.33853 * 128.67817 * 195.87613 * 25 24 23 27 27 N 1.34426 * 107.79699 * 179.85201 * 26 25 24 28 28 C 1.30784 * 109.32174 * 0.02562 * 27 26 25 29 29 N 1.34409 * 108.55106 * 0.03701 * 28 27 26 30 30 C 1.46475 * 128.44315 * 179.87732 * 29 28 27 31 31 H 0.97004 * 119.99841 * 0.02562 * 1 2 3 32 32 H 1.09004 * 110.43323 * 85.37107 * 10 9 7 33 33 H 1.08993 * 110.38192 * 323.09859 * 10 9 7 34 34 H 1.08996 * 111.00232 * 204.83074 * 11 10 9 35 35 H 1.08999 * 111.03498 * 80.99618 * 11 10 9 36 36 H 1.09001 * 110.71993 * 277.13522 * 12 11 10 37 37 H 1.09001 * 110.87114 * 153.93595 * 12 11 10 38 38 H 1.08996 * 109.47231 * 56.67960 * 15 13 9 39 39 H 1.08997 * 109.46894 * 296.67631 * 15 13 9 40 40 H 1.09004 * 109.47640 * 65.08375 * 16 15 13 41 41 H 1.08998 * 109.47230 * 305.08330 * 16 15 13 42 42 H 1.08998 * 109.46934 * 300.00066 * 17 16 15 43 43 H 1.09001 * 109.47340 * 60.00065 * 17 16 15 44 44 H 0.96998 * 119.99923 * 0.02562 * 18 17 16 45 45 H 1.08998 * 109.49976 * 309.93322 * 23 21 19 46 46 H 1.09001 * 109.49429 * 70.03450 * 23 21 19 47 47 H 1.09004 * 109.73451 * 191.60397 * 24 23 21 48 48 H 1.08999 * 109.83229 * 70.88385 * 24 23 21 49 49 H 1.07999 * 126.10747 * 359.83694 * 26 25 24 50 50 H 1.07995 * 125.72567 * 180.02562 * 28 27 26 51 51 H 1.08996 * 109.60025 * 77.51650 * 30 29 28 52 52 H 1.09004 * 109.59810 * 317.04594 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1174 -2.5535 0.2724 11 6 -0.2636 -4.0156 0.7630 12 6 0.7705 -4.7492 -0.1315 13 6 1.9046 -3.7119 -0.2707 14 1 2.6934 -3.9262 0.4503 15 6 2.4733 -3.7501 -1.6906 16 6 3.1463 -5.1024 -1.9341 17 6 3.8244 -5.0949 -3.3057 18 7 4.4694 -6.3895 -3.5387 19 6 5.1326 -6.6144 -4.6902 20 8 5.1958 -5.7449 -5.5333 21 6 5.7965 -7.9459 -4.9296 22 1 5.0462 -8.7360 -4.8987 23 6 6.4720 -7.9385 -6.3037 24 6 6.9279 -9.3622 -6.6525 25 6 7.6753 -9.9163 -5.4667 26 6 8.4863 -10.9797 -5.4115 27 7 8.9300 -11.0929 -4.1476 28 6 8.4178 -10.1331 -3.4217 29 7 7.6290 -9.3783 -4.2057 30 6 6.8447 -8.1965 -3.8400 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6964 -2.3992 -0.6382 33 1 -0.4395 -1.8591 1.0483 34 1 -1.2713 -4.3894 0.5823 35 1 0.0001 -4.1029 1.8170 36 1 0.3405 -4.9835 -1.1053 37 1 1.1331 -5.6540 0.3561 38 1 3.2066 -2.9526 -1.8098 39 1 1.6656 -3.6116 -2.4093 40 1 2.3960 -5.8924 -1.9041 41 1 3.8932 -5.2811 -1.1606 42 1 3.0775 -4.9162 -4.0792 43 1 4.5748 -4.3049 -3.3357 44 1 4.4185 -7.0850 -2.8645 45 1 5.7640 -7.5894 -7.0553 46 1 7.3360 -7.2743 -6.2807 47 1 7.5848 -9.3357 -7.5220 48 1 6.0603 -9.9866 -6.8655 49 1 8.7389 -11.6309 -6.2352 50 1 8.5982 -9.9739 -2.3688 51 1 7.5027 -7.3312 -3.7606 52 1 6.3469 -8.3689 -2.8858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480823749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:13 Heat of formation + Delta-G solvation = 9.977924 kcal Electronic energy + Delta-G solvation = -29815.946621 eV Core-core repulsion = 25815.251178 eV Total energy + Delta-G solvation = -4000.695443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.30162 -41.04696 -39.46310 -37.40295 -36.66056 -34.71658 -34.02354 -33.63348 -31.82820 -31.21559 -29.57257 -28.65766 -26.67247 -26.06823 -25.32047 -23.60528 -22.69538 -22.37822 -21.85740 -21.48891 -20.68934 -20.06244 -18.72605 -18.37066 -17.94510 -17.02386 -16.94156 -16.77666 -16.61381 -16.05263 -15.84954 -15.64807 -15.15784 -15.08724 -14.90807 -14.76976 -14.62192 -14.24951 -14.03955 -13.85301 -13.69152 -13.57251 -13.14298 -13.01213 -12.95355 -12.77835 -12.74323 -12.66149 -12.24052 -12.17248 -11.99954 -11.98995 -11.82120 -11.67046 -11.52707 -11.30475 -11.16912 -11.03471 -10.83748 -10.66069 -10.50185 -10.16299 -9.27699 -8.77908 -7.84741 -5.19850 1.11842 1.41894 1.43965 1.45295 1.53406 1.80220 2.10496 2.20937 2.49708 3.26674 3.33505 3.48697 3.53787 3.70801 3.76549 3.95145 3.95646 4.02161 4.10016 4.14681 4.18116 4.24389 4.27505 4.35771 4.36393 4.44585 4.46322 4.61947 4.64063 4.78246 4.82210 4.83581 4.87330 4.93059 5.00405 5.04493 5.05514 5.14607 5.15681 5.25006 5.34048 5.39457 5.41918 5.51349 5.53848 5.68882 5.72330 5.80304 5.80873 6.28055 6.28590 6.47928 7.12773 7.12842 7.16259 7.83112 8.50366 9.26521 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.001786 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.097964 B =15677.534716 C =16212.178461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.069 4.069 3 Si 0.970 3.030 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.620 5.620 10 C 0.172 3.828 11 C -0.138 4.138 12 C -0.110 4.110 13 C 0.151 3.849 14 H 0.036 0.964 15 C -0.113 4.113 16 C -0.108 4.108 17 C 0.124 3.876 18 N -0.710 5.710 19 C 0.519 3.481 20 O -0.578 6.578 21 C -0.108 4.108 22 H 0.130 0.870 23 C -0.105 4.105 24 C -0.038 4.038 25 C -0.027 4.027 26 C -0.049 4.049 27 N -0.538 5.538 28 C 0.184 3.816 29 N -0.456 5.456 30 C 0.114 3.886 31 H 0.245 0.755 32 H -0.010 1.010 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.036 0.964 39 H 0.039 0.961 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.419 0.581 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.101 0.899 48 H 0.100 0.900 49 H 0.178 0.822 50 H 0.235 0.765 51 H 0.089 0.911 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.500 -24.175 -7.920 27.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.799 3.201 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.344 5.344 10 C 0.047 3.953 11 C -0.176 4.176 12 C -0.148 4.148 13 C 0.045 3.955 14 H 0.054 0.946 15 C -0.153 4.153 16 C -0.146 4.146 17 C 0.000 4.000 18 N -0.362 5.362 19 C 0.305 3.695 20 O -0.457 6.457 21 C -0.130 4.130 22 H 0.148 0.852 23 C -0.143 4.143 24 C -0.077 4.077 25 C -0.142 4.142 26 C -0.195 4.195 27 N -0.257 5.257 28 C -0.098 4.098 29 N -0.139 5.139 30 C -0.008 4.008 31 H 0.054 0.946 32 H 0.008 0.992 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.256 0.744 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.195 0.805 50 H 0.251 0.749 51 H 0.107 0.893 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.966 -23.812 -8.124 27.861 hybrid contribution -0.375 2.092 -0.100 2.128 sum 11.591 -21.720 -8.224 25.957 Atomic orbital electron populations 1.70149 1.06280 1.25048 1.58466 1.25656 0.96509 1.00939 1.03063 0.85199 0.77863 0.79753 0.77305 1.21678 1.22246 1.19300 1.19293 0.90694 0.83729 1.41949 0.90510 1.44934 1.05713 1.02327 1.81463 1.21286 0.84574 0.93342 0.96081 1.22877 0.99696 0.95710 0.99351 1.22583 0.95010 0.97284 0.99918 1.21230 0.95087 0.85274 0.93902 0.94595 1.21823 0.98951 0.96645 0.97917 1.21635 1.00371 0.97528 0.95080 1.21265 0.96142 0.84860 0.97760 1.45939 1.53924 1.17035 1.19351 1.20657 0.78310 0.89090 0.81414 1.90748 1.61779 1.47388 1.45771 1.21561 0.98626 0.95567 0.97218 0.85206 1.21467 1.00720 0.96988 0.95148 1.20302 0.99795 0.94361 0.93197 1.21494 1.05771 0.98937 0.87981 1.22145 1.01691 1.00125 0.95580 1.70478 1.26599 1.24064 1.04549 1.25430 0.94508 0.90001 0.99891 1.45465 1.36111 1.23558 1.08766 1.22021 0.93086 0.86419 0.99264 0.94591 0.99234 0.95028 0.90186 0.91825 0.91064 0.88354 0.94520 0.94210 0.89124 0.89733 0.92968 0.93142 0.74363 0.90017 0.92289 0.88036 0.88179 0.80503 0.74929 0.89279 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.50 10.54 21.65 0.23 -57.27 16 2 C -0.07 -3.92 5.47 84.86 0.46 -3.46 16 3 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.23 -12.48 9.75 84.03 0.82 -11.66 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.62 -30.60 3.14 -667.44 -2.09 -32.69 16 10 C 0.17 8.35 5.46 86.79 0.47 8.83 16 11 C -0.14 -4.72 7.09 31.99 0.23 -4.50 16 12 C -0.11 -3.14 5.61 31.78 0.18 -2.96 16 13 C 0.15 5.46 3.18 45.34 0.14 5.60 16 14 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 15 C -0.11 -3.63 4.69 30.59 0.14 -3.48 16 16 C -0.11 -2.10 5.07 30.59 0.16 -1.95 16 17 C 0.12 2.55 5.67 86.38 0.49 3.04 16 18 N -0.71 -9.60 5.46 -463.06 -2.53 -12.13 16 19 C 0.52 8.81 7.14 87.66 0.63 9.44 16 20 O -0.58 -15.94 15.81 -3.03 -0.05 -15.99 16 21 C -0.11 -1.08 2.52 -11.42 -0.03 -1.11 16 22 H 0.13 0.82 8.11 -2.39 -0.02 0.80 16 23 C -0.10 -1.30 4.69 30.81 0.14 -1.16 16 24 C -0.04 -0.36 6.31 30.03 0.19 -0.18 16 25 C -0.03 -0.38 6.57 40.73 0.27 -0.12 16 26 C -0.05 -0.86 11.84 83.30 0.99 0.13 16 27 N -0.54 -10.98 11.27 -200.98 -2.26 -13.24 16 28 C 0.18 2.58 12.66 180.38 2.28 4.87 16 29 N -0.46 -5.55 3.13 -514.90 -1.61 -7.16 16 30 C 0.11 0.86 6.12 86.47 0.53 1.39 16 31 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 32 H -0.01 -0.56 8.10 -2.38 -0.02 -0.58 16 33 H 0.03 1.75 6.83 -2.39 -0.02 1.74 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 1.91 7.79 -2.39 -0.02 1.89 16 37 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.04 1.36 7.89 -2.39 -0.02 1.34 16 39 H 0.04 1.42 8.07 -2.39 -0.02 1.40 16 40 H 0.09 1.39 7.57 -2.39 -0.02 1.37 16 41 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.42 2.41 8.10 -92.71 -0.75 1.66 16 45 H 0.08 1.17 7.77 -2.39 -0.02 1.15 16 46 H 0.06 0.92 8.12 -2.39 -0.02 0.90 16 47 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 50 H 0.23 1.48 8.06 -2.91 -0.02 1.46 16 51 H 0.09 0.78 8.12 -2.39 -0.02 0.76 16 52 H 0.13 0.15 7.85 -2.38 -0.02 0.13 16 Total: -1.00 -80.17 409.93 1.95 -78.22 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.15 Total: 9.44 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 8.09 Total: 2.74 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -8.27 Total: -122.49 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.05 Total: -15.99 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -80.17 1.95 -78.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480823749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.201 kcal (2) G-P(sol) polarization free energy of solvation -80.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds