Wall clock time and date at job start Wed Apr 1 2020 04:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48504 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46894 * 299.99542 * 3 2 1 6 6 H 1.48492 * 109.47309 * 59.99926 * 3 2 1 7 7 C 1.38815 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00276 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99496 * 0.02562 * 7 2 1 10 10 C 1.46510 * 119.99628 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46482 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47014 * 65.00587 * 11 10 9 13 13 N 1.46499 * 109.47493 * 304.99988 * 11 10 9 14 14 C 1.34777 * 119.99665 * 155.28120 * 13 11 10 15 15 O 1.21603 * 120.00257 * 359.72088 * 14 13 11 16 16 C 1.47425 * 119.99743 * 179.72398 * 14 13 11 17 17 C 1.41291 * 126.41772 * 359.68438 * 16 14 13 18 18 N 1.30442 * 108.02776 * 179.87824 * 17 16 14 19 19 N 1.39937 * 108.89295 * 0.38423 * 18 17 16 20 20 C 1.46507 * 125.74950 * 179.72891 * 19 18 17 21 21 C 1.53006 * 109.46792 * 215.02579 * 20 19 18 22 22 C 1.52997 * 109.46722 * 180.02562 * 21 20 19 23 23 C 1.52998 * 109.47506 * 60.00120 * 22 21 20 24 24 C 1.53006 * 109.47032 * 299.99690 * 23 22 21 25 25 C 1.52997 * 109.46722 * 59.99830 * 24 23 22 26 26 C 1.34251 * 108.49202 * 359.75100 * 19 18 17 27 27 C 1.52999 * 109.46645 * 185.00036 * 11 10 9 28 28 C 1.53009 * 117.50162 * 248.74970 * 27 11 10 29 29 C 1.53004 * 117.50286 * 180.09147 * 27 11 10 30 30 H 0.97003 * 120.00485 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00283 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46604 * 59.99973 * 10 9 7 33 33 H 1.08988 * 109.46867 * 299.99676 * 10 9 7 34 34 H 0.97001 * 119.99790 * 334.99833 * 13 11 10 35 35 H 1.08008 * 125.98679 * 0.02562 * 17 16 14 36 36 H 1.08998 * 109.47101 * 335.02488 * 20 19 18 37 37 H 1.09003 * 109.46995 * 300.00284 * 21 20 19 38 38 H 1.08999 * 109.47166 * 60.00439 * 21 20 19 39 39 H 1.09003 * 109.47270 * 299.99690 * 22 21 20 40 40 H 1.09006 * 109.46846 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.47340 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.47207 * 59.99532 * 23 22 21 43 43 H 1.09003 * 109.46995 * 299.99972 * 24 23 22 44 44 H 1.08999 * 109.47166 * 179.97438 * 24 23 22 45 45 H 1.09006 * 109.46846 * 179.97438 * 25 24 23 46 46 H 1.09003 * 109.47270 * 60.00309 * 25 24 23 47 47 H 1.07999 * 126.29046 * 180.02562 * 26 19 18 48 48 H 1.08997 * 115.55354 * 34.41855 * 27 11 10 49 49 H 1.08999 * 117.49124 * 0.02562 * 28 27 11 50 50 H 1.09001 * 117.50171 * 145.01715 * 28 27 11 51 51 H 1.08993 * 117.50276 * 214.98380 * 29 27 11 52 52 H 1.09005 * 117.49316 * 359.97364 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.4974 -4.8138 -0.9300 13 7 0.1448 -4.6758 1.1329 14 6 -1.0776 -5.2414 1.0843 15 8 -1.4195 -5.8669 0.0991 16 6 -2.0002 -5.1018 2.2257 17 6 -1.7429 -4.4145 3.4330 18 7 -2.8017 -4.5151 4.1883 19 7 -3.7694 -5.2680 3.5140 20 6 -5.0979 -5.6112 4.0276 21 6 -5.4883 -7.0077 3.5393 22 6 -6.8759 -7.3658 4.0751 23 6 -7.8971 -6.3449 3.5694 24 6 -7.5067 -4.9484 4.0578 25 6 -6.1191 -4.5902 3.5219 26 6 -3.2751 -5.6232 2.3174 27 6 1.8248 -6.1411 0.1269 28 6 1.8339 -7.0696 -1.0892 29 6 1.0023 -7.4311 0.1440 30 1 -0.4851 0.8400 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6848 -3.7144 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 0.4176 -4.1769 1.9188 35 1 -0.8304 -3.8946 3.6853 36 1 -5.0805 -5.5990 5.1174 37 1 -5.5057 -7.0199 2.4495 38 1 -4.7606 -7.7350 3.8992 39 1 -6.8589 -7.3536 5.1649 40 1 -7.1538 -8.3609 3.7276 41 1 -8.8856 -6.5998 3.9516 42 1 -7.9141 -6.3571 2.4796 43 1 -7.4897 -4.9361 5.1476 44 1 -8.2340 -4.2209 3.6972 45 1 -5.8412 -3.5951 3.8694 46 1 -6.1361 -4.6025 2.4321 47 1 -3.7819 -6.2088 1.5647 48 1 2.7237 -6.1092 0.7425 49 1 1.2982 -6.7387 -1.9789 50 1 2.7388 -7.6488 -1.2735 51 1 1.3603 -8.2480 0.7706 52 1 -0.0810 -7.3383 0.0661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670540407.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:06 Heat of formation + Delta-G solvation = 58.776065 kcal Electronic energy + Delta-G solvation = -30637.553360 eV Core-core repulsion = 26638.973964 eV Total energy + Delta-G solvation = -3998.579397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.46488 -39.44459 -38.58406 -36.88825 -34.92286 -33.51579 -33.06423 -31.33659 -31.08864 -30.16877 -29.17681 -27.76494 -24.29723 -23.67505 -23.17845 -22.47717 -22.00820 -21.43390 -20.86961 -20.38737 -19.80737 -19.53399 -17.98492 -17.07783 -16.14145 -15.98985 -15.50859 -15.11315 -14.98797 -14.89436 -14.83974 -14.51884 -14.42021 -14.20164 -13.52806 -13.39490 -13.25273 -13.12152 -12.83604 -12.75375 -12.71873 -12.60788 -12.02260 -11.79512 -11.63554 -11.58982 -11.17166 -11.11479 -11.03309 -10.95816 -10.85683 -10.84091 -10.78997 -10.67388 -10.11805 -10.02435 -9.86148 -9.64066 -9.51142 -9.40362 -8.88289 -8.65406 -8.38662 -6.91827 -5.74271 -3.03953 1.64797 2.25150 2.34415 3.44456 3.50114 3.52461 3.58900 3.80208 4.04090 4.21057 4.27245 4.38521 4.54018 4.59234 4.64645 4.72160 4.83437 4.91370 4.94870 4.97550 4.98680 5.11767 5.26162 5.27505 5.30858 5.36956 5.45975 5.53421 5.54304 5.57876 5.59186 5.62872 5.64807 5.74189 5.81335 5.83841 5.92156 5.93662 5.94239 5.99988 6.16982 6.30291 6.43931 6.50968 6.58024 6.61946 6.76597 6.85532 7.07502 7.61375 7.72100 8.06283 8.43229 8.73598 9.55267 10.11788 10.47387 11.47855 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.002825 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.718230 B = 9909.885158 C =12225.234697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.171 3.829 12 H 0.087 0.913 13 N -0.703 5.703 14 C 0.599 3.401 15 O -0.559 6.559 16 C -0.284 4.284 17 C 0.087 3.913 18 N -0.300 5.300 19 N -0.359 5.359 20 C 0.162 3.838 21 C -0.132 4.132 22 C -0.113 4.113 23 C -0.125 4.125 24 C -0.115 4.115 25 C -0.133 4.133 26 C 0.123 3.877 27 C -0.162 4.162 28 C -0.172 4.172 29 C -0.185 4.185 30 H 0.254 0.746 31 H 0.387 0.613 32 H 0.025 0.975 33 H 0.035 0.965 34 H 0.402 0.598 35 H 0.190 0.810 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.182 0.818 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.088 0.912 51 H 0.081 0.919 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.605 -17.716 9.204 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.066 3.934 12 H 0.105 0.895 13 N -0.351 5.351 14 C 0.387 3.613 15 O -0.440 6.440 16 C -0.299 4.299 17 C -0.101 4.101 18 N -0.119 5.119 19 N -0.137 5.137 20 C 0.061 3.939 21 C -0.171 4.171 22 C -0.152 4.152 23 C -0.163 4.163 24 C -0.153 4.153 25 C -0.171 4.171 26 C -0.028 4.028 27 C -0.182 4.182 28 C -0.210 4.210 29 C -0.221 4.221 30 H 0.064 0.936 31 H 0.221 0.779 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.237 0.763 35 H 0.207 0.793 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.199 0.801 48 H 0.120 0.880 49 H 0.112 0.888 50 H 0.106 0.894 51 H 0.099 0.901 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.340 -17.721 9.696 24.208 hybrid contribution 0.819 1.137 -0.430 1.466 sum -12.521 -16.584 9.266 22.752 Atomic orbital electron populations 1.69681 1.05059 1.25476 1.57533 1.24745 0.95489 0.97652 1.02976 0.86138 0.78783 0.84233 0.77142 1.20573 1.21938 1.21917 1.19250 0.91030 0.84046 1.42832 0.91106 1.42367 1.06053 0.99695 1.89519 1.20919 0.93048 0.85160 0.98898 1.20762 0.90067 0.92587 0.89953 0.89450 1.45697 1.14432 1.54335 1.20662 1.17147 0.80868 0.78019 0.85285 1.90652 1.76534 1.43163 1.33624 1.20295 0.97278 1.13660 0.98634 1.24119 0.97508 0.96998 0.91449 1.77164 0.98395 1.15209 1.21104 1.48680 1.12983 1.39804 1.12260 1.21391 0.77177 0.95043 1.00318 1.21976 0.98253 0.94667 1.02200 1.21482 0.93280 0.99346 1.01049 1.21620 0.98726 0.94567 1.01343 1.21505 0.95681 0.97108 1.01043 1.22009 0.94197 0.99042 1.01888 1.22785 0.93886 0.97220 0.88911 1.22654 1.01426 0.91574 1.02509 1.22890 1.01987 1.03287 0.92836 1.23269 1.00831 0.97420 1.00623 0.93602 0.77918 0.95774 0.94752 0.76299 0.79315 0.87813 0.90578 0.90669 0.91448 0.90950 0.91470 0.91527 0.91500 0.91064 0.90632 0.90941 0.80111 0.88000 0.88787 0.89363 0.90089 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.22 5.43 -59.91 -0.33 -18.55 16 10 C 0.15 2.92 5.80 -4.04 -0.02 2.89 16 11 C 0.17 2.96 2.43 -67.93 -0.17 2.79 16 12 H 0.09 1.72 7.34 -51.93 -0.38 1.34 16 13 N -0.70 -11.70 4.49 -54.88 -0.25 -11.95 16 14 C 0.60 10.27 7.14 -12.52 -0.09 10.18 16 15 O -0.56 -10.72 13.91 5.27 0.07 -10.65 16 16 C -0.28 -4.32 6.13 -105.07 -0.64 -4.97 16 17 C 0.09 1.26 11.50 -16.98 -0.20 1.07 16 18 N -0.30 -4.37 12.50 30.86 0.39 -3.98 16 19 N -0.36 -4.39 3.50 -54.31 -0.19 -4.58 16 20 C 0.16 1.43 3.18 -67.92 -0.22 1.21 16 21 C -0.13 -0.89 4.84 -26.73 -0.13 -1.02 16 22 C -0.11 -0.58 5.92 -26.73 -0.16 -0.74 16 23 C -0.13 -0.65 5.92 -26.73 -0.16 -0.81 16 24 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 25 C -0.13 -1.11 5.53 -26.73 -0.15 -1.26 16 26 C 0.12 1.61 10.39 -16.57 -0.17 1.44 16 27 C -0.16 -2.37 5.36 -90.61 -0.49 -2.85 16 28 C -0.17 -2.34 10.18 -26.69 -0.27 -2.61 16 29 C -0.18 -2.62 9.73 -26.69 -0.26 -2.88 16 30 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.39 10.34 7.33 -40.82 -0.30 10.04 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.03 0.69 8.14 -51.94 -0.42 0.27 16 34 H 0.40 6.39 7.56 -40.82 -0.31 6.08 16 35 H 0.19 2.39 7.50 -52.48 -0.39 2.00 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.51 7.13 -51.93 -0.37 0.14 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.18 2.00 7.23 -52.49 -0.38 1.62 16 48 H 0.10 1.39 8.11 -51.93 -0.42 0.97 16 49 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 50 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 51 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 52 H 0.12 1.95 5.00 -51.93 -0.26 1.69 16 LS Contribution 414.61 15.07 6.25 6.25 Total: -1.00 -33.04 414.61 -10.57 -43.61 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -8.70 Total: 15.54 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -3.52 Total: -5.65 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: 0.35 Total: -66.49 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.07 Total: -10.65 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.04 -10.57 -43.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670540407.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.383 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds