Wall clock time and date at job start Wed Apr 1 2020 04:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48504 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46894 * 299.99542 * 3 2 1 6 6 H 1.48492 * 109.47309 * 59.99926 * 3 2 1 7 7 C 1.38815 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00276 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99496 * 0.02562 * 7 2 1 10 10 C 1.46510 * 119.99628 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46482 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47014 * 65.00587 * 11 10 9 13 13 N 1.46499 * 109.47493 * 304.99988 * 11 10 9 14 14 C 1.34777 * 119.99665 * 155.28120 * 13 11 10 15 15 O 1.21603 * 120.00257 * 359.72088 * 14 13 11 16 16 C 1.47425 * 119.99743 * 179.72398 * 14 13 11 17 17 C 1.41291 * 126.41772 * 359.68438 * 16 14 13 18 18 N 1.30442 * 108.02776 * 179.87824 * 17 16 14 19 19 N 1.39937 * 108.89295 * 0.38423 * 18 17 16 20 20 C 1.46507 * 125.74950 * 179.72891 * 19 18 17 21 21 C 1.53006 * 109.46792 * 215.02579 * 20 19 18 22 22 C 1.52997 * 109.46722 * 180.02562 * 21 20 19 23 23 C 1.52998 * 109.47506 * 60.00120 * 22 21 20 24 24 C 1.53006 * 109.47032 * 299.99690 * 23 22 21 25 25 C 1.52997 * 109.46722 * 59.99830 * 24 23 22 26 26 C 1.34251 * 108.49202 * 359.75100 * 19 18 17 27 27 C 1.52999 * 109.46645 * 185.00036 * 11 10 9 28 28 C 1.53009 * 117.50162 * 248.74970 * 27 11 10 29 29 C 1.53004 * 117.50286 * 180.09147 * 27 11 10 30 30 H 0.97003 * 120.00485 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00283 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46604 * 59.99973 * 10 9 7 33 33 H 1.08988 * 109.46867 * 299.99676 * 10 9 7 34 34 H 0.97001 * 119.99790 * 334.99833 * 13 11 10 35 35 H 1.08008 * 125.98679 * 0.02562 * 17 16 14 36 36 H 1.08998 * 109.47101 * 335.02488 * 20 19 18 37 37 H 1.09003 * 109.46995 * 300.00284 * 21 20 19 38 38 H 1.08999 * 109.47166 * 60.00439 * 21 20 19 39 39 H 1.09003 * 109.47270 * 299.99690 * 22 21 20 40 40 H 1.09006 * 109.46846 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.47340 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.47207 * 59.99532 * 23 22 21 43 43 H 1.09003 * 109.46995 * 299.99972 * 24 23 22 44 44 H 1.08999 * 109.47166 * 179.97438 * 24 23 22 45 45 H 1.09006 * 109.46846 * 179.97438 * 25 24 23 46 46 H 1.09003 * 109.47270 * 60.00309 * 25 24 23 47 47 H 1.07999 * 126.29046 * 180.02562 * 26 19 18 48 48 H 1.08997 * 115.55354 * 34.41855 * 27 11 10 49 49 H 1.08999 * 117.49124 * 0.02562 * 28 27 11 50 50 H 1.09001 * 117.50171 * 145.01715 * 28 27 11 51 51 H 1.08993 * 117.50276 * 214.98380 * 29 27 11 52 52 H 1.09005 * 117.49316 * 359.97364 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.4974 -4.8138 -0.9300 13 7 0.1448 -4.6758 1.1329 14 6 -1.0776 -5.2414 1.0843 15 8 -1.4195 -5.8669 0.0991 16 6 -2.0002 -5.1018 2.2257 17 6 -1.7429 -4.4145 3.4330 18 7 -2.8017 -4.5151 4.1883 19 7 -3.7694 -5.2680 3.5140 20 6 -5.0979 -5.6112 4.0276 21 6 -5.4883 -7.0077 3.5393 22 6 -6.8759 -7.3658 4.0751 23 6 -7.8971 -6.3449 3.5694 24 6 -7.5067 -4.9484 4.0578 25 6 -6.1191 -4.5902 3.5219 26 6 -3.2751 -5.6232 2.3174 27 6 1.8248 -6.1411 0.1269 28 6 1.8339 -7.0696 -1.0892 29 6 1.0023 -7.4311 0.1440 30 1 -0.4851 0.8400 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6848 -3.7144 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 0.4176 -4.1769 1.9188 35 1 -0.8304 -3.8946 3.6853 36 1 -5.0805 -5.5990 5.1174 37 1 -5.5057 -7.0199 2.4495 38 1 -4.7606 -7.7350 3.8992 39 1 -6.8589 -7.3536 5.1649 40 1 -7.1538 -8.3609 3.7276 41 1 -8.8856 -6.5998 3.9516 42 1 -7.9141 -6.3571 2.4796 43 1 -7.4897 -4.9361 5.1476 44 1 -8.2340 -4.2209 3.6972 45 1 -5.8412 -3.5951 3.8694 46 1 -6.1361 -4.6025 2.4321 47 1 -3.7819 -6.2088 1.5647 48 1 2.7237 -6.1092 0.7425 49 1 1.2982 -6.7387 -1.9789 50 1 2.7388 -7.6488 -1.2735 51 1 1.3603 -8.2480 0.7706 52 1 -0.0810 -7.3383 0.0661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670540407.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:05 Heat of formation + Delta-G solvation = 39.205772 kcal Electronic energy + Delta-G solvation = -30638.401992 eV Core-core repulsion = 26638.973964 eV Total energy + Delta-G solvation = -3999.428028 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.51947 -40.72052 -39.28650 -38.19298 -36.57650 -34.95760 -34.09975 -32.93257 -31.90676 -31.31643 -30.19701 -29.23125 -26.00358 -24.85039 -23.81259 -23.47649 -23.12585 -23.00675 -21.73073 -21.45990 -21.07817 -20.37433 -19.36612 -18.80326 -17.32973 -17.12167 -16.67655 -16.58868 -16.18360 -15.90217 -15.79847 -15.72260 -15.18230 -15.13756 -15.03137 -14.83077 -14.73269 -14.29139 -13.97663 -13.74783 -13.65751 -13.42265 -13.24438 -13.15685 -12.82126 -12.66419 -12.46384 -12.42784 -12.24701 -12.16512 -12.07378 -12.01466 -11.82404 -11.56908 -11.42290 -11.28603 -11.19612 -11.04394 -10.97080 -10.70423 -10.53268 -9.93820 -9.59333 -8.98724 -7.91902 -5.21382 0.54464 1.16312 1.31984 1.48940 1.49515 1.59537 2.30735 2.52227 2.57684 3.09023 3.33841 3.42559 3.60737 3.63441 3.69261 3.76377 3.87714 4.01396 4.06015 4.11848 4.15483 4.19337 4.22489 4.25727 4.37319 4.38435 4.42200 4.46339 4.52106 4.58361 4.69098 4.74720 4.85572 4.87025 4.95211 4.97107 5.00012 5.09657 5.11831 5.13637 5.17333 5.27252 5.30731 5.34281 5.39610 5.44664 5.47735 5.53109 5.68416 5.89006 6.28198 6.50825 6.73456 7.35779 7.39544 8.09616 8.33678 9.31103 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.002825 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.718230 B = 9909.885158 C =12225.234697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.298 1.298 6 H -0.294 1.294 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.182 3.818 12 H 0.058 0.942 13 N -0.701 5.701 14 C 0.597 3.403 15 O -0.584 6.584 16 C -0.310 4.310 17 C 0.082 3.918 18 N -0.320 5.320 19 N -0.350 5.350 20 C 0.155 3.845 21 C -0.127 4.127 22 C -0.109 4.109 23 C -0.123 4.123 24 C -0.111 4.111 25 C -0.129 4.129 26 C 0.132 3.868 27 C -0.165 4.165 28 C -0.164 4.164 29 C -0.182 4.182 30 H 0.248 0.752 31 H 0.374 0.626 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.405 0.595 35 H 0.200 0.800 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.201 0.799 48 H 0.120 0.880 49 H 0.081 0.919 50 H 0.115 0.885 51 H 0.101 0.899 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.300 -19.129 10.022 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.225 1.225 6 H -0.222 1.222 7 C -0.371 4.371 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.077 3.923 12 H 0.077 0.923 13 N -0.349 5.349 14 C 0.387 3.613 15 O -0.467 6.467 16 C -0.325 4.325 17 C -0.105 4.105 18 N -0.139 5.139 19 N -0.128 5.128 20 C 0.055 3.945 21 C -0.166 4.166 22 C -0.147 4.147 23 C -0.160 4.160 24 C -0.149 4.149 25 C -0.168 4.168 26 C -0.021 4.021 27 C -0.185 4.185 28 C -0.201 4.201 29 C -0.219 4.219 30 H 0.057 0.943 31 H 0.206 0.794 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.241 0.759 35 H 0.217 0.783 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.217 0.783 48 H 0.138 0.862 49 H 0.100 0.900 50 H 0.133 0.867 51 H 0.120 0.880 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.001 -19.160 10.540 25.441 hybrid contribution 0.679 1.515 -0.684 1.795 sum -12.322 -17.646 9.855 23.671 Atomic orbital electron populations 1.69846 1.06644 1.25753 1.59605 1.25546 0.96286 1.01032 1.03871 0.85093 0.78378 0.79982 0.76409 1.18805 1.22546 1.22173 1.19662 0.91581 0.85040 1.40826 0.90225 1.42540 1.05666 1.00918 1.89434 1.21050 0.93364 0.83862 0.99423 1.20528 0.89462 0.93305 0.89048 0.92342 1.45658 1.14462 1.54336 1.20486 1.17392 0.80985 0.77498 0.85467 1.90632 1.76987 1.44387 1.34709 1.20269 0.98062 1.15585 0.98559 1.24303 0.98016 0.96948 0.91208 1.77111 0.98911 1.16065 1.21848 1.49006 1.13522 1.38475 1.11755 1.21760 0.75584 0.96498 1.00638 1.21980 0.99382 0.92948 1.02266 1.21486 0.91867 0.99876 1.01460 1.21619 0.99451 0.93752 1.01228 1.21497 0.93977 0.97965 1.01428 1.21977 0.95577 0.97868 1.01379 1.23063 0.93280 0.96385 0.89332 1.22564 1.01789 0.90149 1.03966 1.22975 1.02637 1.02572 0.91934 1.23200 0.99573 0.97601 1.01480 0.94272 0.79383 0.94118 0.94474 0.75916 0.78348 0.87379 0.90521 0.90727 0.90729 0.89679 0.90050 0.91805 0.90753 0.90746 0.92694 0.91727 0.78275 0.86194 0.89999 0.86681 0.88023 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 2 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 3 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 7 C -0.24 -13.17 9.99 84.03 0.84 -12.33 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.74 -37.28 5.43 -343.45 -1.87 -39.14 16 10 C 0.15 5.83 5.80 86.38 0.50 6.34 16 11 C 0.18 6.31 2.43 44.99 0.11 6.42 16 12 H 0.06 2.38 7.34 -2.39 -0.02 2.36 16 13 N -0.70 -23.76 4.49 -445.81 -2.00 -25.76 16 14 C 0.60 21.04 7.14 86.66 0.62 21.66 16 15 O -0.58 -23.08 13.91 -4.04 -0.06 -23.14 16 16 C -0.31 -9.63 6.13 -20.15 -0.12 -9.76 16 17 C 0.08 2.44 11.50 85.65 0.99 3.43 16 18 N -0.32 -9.40 12.50 -56.27 -0.70 -10.11 16 19 N -0.35 -8.52 3.50 -325.74 -1.14 -9.66 16 20 C 0.16 2.62 3.18 44.99 0.14 2.77 16 21 C -0.13 -1.53 4.84 30.60 0.15 -1.38 16 22 C -0.11 -0.86 5.92 30.59 0.18 -0.68 16 23 C -0.12 -1.02 5.92 30.60 0.18 -0.84 16 24 C -0.11 -1.20 5.92 30.60 0.18 -1.01 16 25 C -0.13 -2.13 5.53 30.59 0.17 -1.96 16 26 C 0.13 3.47 10.39 84.28 0.88 4.34 16 27 C -0.17 -4.61 5.36 -10.79 -0.06 -4.67 16 28 C -0.16 -4.18 10.18 30.62 0.31 -3.86 16 29 C -0.18 -4.94 9.73 30.62 0.30 -4.64 16 30 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.37 20.54 7.33 -92.71 -0.68 19.86 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.41 13.08 7.56 -92.71 -0.70 12.38 16 35 H 0.20 5.17 7.50 -2.91 -0.02 5.15 16 36 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 0.93 7.13 -2.39 -0.02 0.91 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 0.51 8.14 -2.39 -0.02 0.50 16 40 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 46 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.20 4.34 7.23 -2.91 -0.02 4.32 16 48 H 0.12 2.95 8.11 -2.39 -0.02 2.93 16 49 H 0.08 2.29 8.05 -2.39 -0.02 2.27 16 50 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 51 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 52 H 0.10 3.13 5.00 -2.38 -0.01 3.12 16 Total: -1.00 -71.40 414.61 1.92 -69.48 By element: Atomic # 1 Polarization: 50.06 SS G_CDS: -0.45 Total: 49.60 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 5.83 Total: -0.02 kcal Atomic # 7 Polarization: -138.79 SS G_CDS: -5.43 Total: -144.22 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.06 Total: -23.14 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -71.40 1.92 -69.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670540407.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.683 kcal (2) G-P(sol) polarization free energy of solvation -71.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds