Wall clock time and date at job start Wed Apr 1 2020 04:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00158 * 2 1 4 4 H 1.48497 * 109.47002 * 269.99977 * 3 2 1 5 5 H 1.48503 * 109.47066 * 29.99721 * 3 2 1 6 6 H 1.48495 * 109.47239 * 150.00017 * 3 2 1 7 7 C 1.38810 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99785 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00563 * 180.02562 * 7 2 1 10 10 C 1.46495 * 120.00206 * 179.72187 * 9 7 2 11 11 C 1.53003 * 109.46971 * 174.98198 * 10 9 7 12 12 H 1.09000 * 109.58966 * 59.67654 * 11 10 9 13 13 C 1.53191 * 109.58574 * 299.24301 * 11 10 9 14 14 C 1.53042 * 109.31024 * 185.57755 * 13 11 10 15 15 C 1.53036 * 109.53990 * 61.36888 * 14 13 11 16 16 C 1.53195 * 109.31291 * 298.63446 * 15 14 13 17 17 N 1.46927 * 108.77574 * 54.63243 * 16 15 14 18 18 C 1.34778 * 120.63245 * 126.36832 * 17 16 15 19 19 O 1.21274 * 120.00003 * 185.45553 * 18 17 16 20 20 C 1.50702 * 119.99536 * 5.45596 * 18 17 16 21 21 C 1.50699 * 109.46840 * 179.97438 * 20 18 17 22 22 C 1.40064 * 126.10105 * 265.02387 * 21 20 18 23 23 N 1.31026 * 108.25875 * 179.97438 * 22 21 20 24 24 N 1.39650 * 108.12437 * 359.97055 * 23 22 21 25 25 C 1.34749 * 126.10369 * 84.71237 * 21 20 18 26 26 C 1.50868 * 127.75841 * 0.67592 * 25 21 20 27 27 C 1.53441 * 108.22856 * 163.85626 * 26 25 21 28 28 C 1.53150 * 109.19487 * 48.35134 * 27 26 25 29 29 C 1.46590 * 127.55038 * 180.10465 * 24 23 22 30 30 H 0.97000 * 120.00194 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99539 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47326 * 294.98075 * 10 9 7 33 33 H 1.08996 * 109.47059 * 54.98142 * 10 9 7 34 34 H 1.08997 * 109.50434 * 305.52970 * 13 11 10 35 35 H 1.08995 * 109.49508 * 65.63323 * 13 11 10 36 36 H 1.08997 * 109.46349 * 301.34808 * 14 13 11 37 37 H 1.09004 * 109.44900 * 181.38193 * 14 13 11 38 38 H 1.08998 * 109.50091 * 178.68095 * 15 14 13 39 39 H 1.09000 * 109.52200 * 58.60078 * 15 14 13 40 40 H 1.08991 * 109.58300 * 294.84444 * 16 15 14 41 41 H 1.09000 * 109.58442 * 174.41698 * 16 15 14 42 42 H 1.08999 * 109.47212 * 299.99670 * 20 18 17 43 43 H 1.09001 * 109.47331 * 60.00021 * 20 18 17 44 44 H 1.08000 * 125.86883 * 359.96426 * 22 21 20 45 45 H 1.09001 * 109.86076 * 44.07288 * 26 25 21 46 46 H 1.08997 * 109.57150 * 283.46738 * 26 25 21 47 47 H 1.08994 * 109.51636 * 288.43390 * 27 26 25 48 48 H 1.09000 * 109.51871 * 168.26694 * 27 26 25 49 49 H 1.08998 * 109.45479 * 170.53864 * 28 27 26 50 50 H 1.08993 * 109.45959 * 50.58872 * 28 27 26 51 51 H 1.08997 * 109.58545 * 282.44542 * 29 24 23 52 52 H 1.09000 * 109.58026 * 42.86035 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0056 11 6 5.6116 -2.1946 -0.1212 12 1 5.9412 -1.5768 0.7141 13 6 5.8903 -1.4695 -1.4415 14 6 7.4020 -1.3201 -1.6275 15 6 8.0492 -2.7054 -1.6913 16 6 7.7949 -3.4446 -0.3738 17 7 6.3488 -3.4655 -0.1148 18 6 5.7106 -4.6284 0.1237 19 8 4.5033 -4.6452 0.2378 20 6 6.4972 -5.9078 0.2484 21 6 5.5545 -7.0533 0.5129 22 6 5.2172 -7.5711 1.7698 23 7 4.3730 -8.5577 1.5943 24 7 4.1470 -8.6973 0.2233 25 6 4.8810 -7.7583 -0.4172 26 6 4.9187 -7.5838 -1.9152 27 6 4.3258 -8.8435 -2.5603 28 6 3.0007 -9.1852 -1.8727 29 6 3.2744 -9.6680 -0.4440 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3621 0.0004 32 1 3.9175 -2.9987 0.9393 33 1 3.7833 -3.0839 -0.8336 34 1 5.4774 -2.0475 -2.2683 35 1 5.4273 -0.4830 -1.4196 36 1 7.8180 -0.7634 -0.7879 37 1 7.6023 -0.7828 -2.5545 38 1 9.1227 -2.5987 -1.8472 39 1 7.6165 -3.2721 -2.5157 40 1 8.3044 -2.9277 0.4393 41 1 8.1672 -4.4662 -0.4502 42 1 7.0416 -6.0913 -0.6779 43 1 7.2036 -5.8210 1.0739 44 1 5.5892 -7.2181 2.7203 45 1 5.9485 -7.4507 -2.2467 46 1 4.3264 -6.7130 -2.1964 47 1 5.0216 -9.6743 -2.4436 48 1 4.1496 -8.6612 -3.6204 49 1 2.4945 -9.9726 -2.4311 50 1 2.3682 -8.2981 -1.8420 51 1 3.7655 -10.6406 -0.4740 52 1 2.3335 -9.7482 0.1005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700344607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:42 Heat of formation + Delta-G solvation = 62.673446 kcal Electronic energy + Delta-G solvation = -31891.953719 eV Core-core repulsion = 27893.543326 eV Total energy + Delta-G solvation = -3998.410393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.62608 -40.20962 -37.26928 -36.62106 -34.94628 -33.44806 -32.73928 -31.97998 -30.52587 -30.31504 -29.95747 -26.95100 -25.86958 -24.42678 -24.33733 -22.85306 -22.30589 -21.21474 -20.97551 -20.35321 -19.05615 -18.63388 -17.54114 -16.63913 -16.45179 -15.81170 -15.59453 -15.44144 -14.70394 -14.53279 -14.46469 -14.35253 -14.26039 -14.14500 -13.85933 -13.73740 -13.40491 -13.29280 -13.10848 -12.77489 -12.58363 -12.53863 -12.07866 -12.04238 -11.81818 -11.67540 -11.33829 -11.28463 -11.25891 -11.18480 -10.99581 -10.88256 -10.71916 -10.59704 -10.49328 -10.28895 -10.11332 -9.44845 -9.15349 -8.83024 -8.76305 -8.31853 -8.22384 -7.01834 -5.62153 -2.95422 1.91122 2.47754 2.72788 2.92723 3.25367 3.44345 3.46020 3.51997 4.17773 4.37414 4.44930 4.52448 4.64468 4.70605 4.73957 4.81276 4.86161 4.96009 5.01362 5.06398 5.10293 5.17595 5.24436 5.27728 5.33178 5.34356 5.40288 5.50481 5.51879 5.57665 5.60772 5.62419 5.67735 5.75115 5.76886 5.87678 5.89036 5.92168 5.95506 5.99841 6.14755 6.17724 6.19766 6.47889 6.67248 6.72190 7.02914 7.09046 7.28371 7.65458 7.78100 8.17713 8.52066 8.59726 9.37852 10.09920 10.30526 11.57180 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010056 B = 0.003448 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.835584 B = 8119.692703 C = 9691.232473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.002 4.002 3 Si 0.882 3.118 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.227 4.227 8 H 0.089 0.911 9 N -0.762 5.762 10 C 0.170 3.830 11 C 0.137 3.863 12 H 0.067 0.933 13 C -0.127 4.127 14 C -0.121 4.121 15 C -0.134 4.134 16 C 0.109 3.891 17 N -0.612 5.612 18 C 0.503 3.497 19 O -0.502 6.502 20 C -0.056 4.056 21 C -0.219 4.219 22 C 0.061 3.939 23 N -0.298 5.298 24 N -0.370 5.370 25 C 0.106 3.894 26 C -0.062 4.062 27 C -0.124 4.124 28 C -0.139 4.139 29 C 0.135 3.865 30 H 0.257 0.743 31 H 0.354 0.646 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.179 0.821 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.080 0.920 51 H 0.080 0.920 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.812 -17.907 -5.668 28.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.196 4.196 3 Si 0.713 3.287 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.357 4.357 8 H 0.107 0.893 9 N -0.410 5.410 10 C 0.045 3.955 11 C 0.034 3.966 12 H 0.085 0.915 13 C -0.166 4.166 14 C -0.159 4.159 15 C -0.172 4.172 16 C -0.014 4.014 17 N -0.348 5.348 18 C 0.291 3.709 19 O -0.375 6.375 20 C -0.097 4.097 21 C -0.231 4.231 22 C -0.125 4.125 23 N -0.118 5.118 24 N -0.153 5.153 25 C -0.021 4.021 26 C -0.100 4.100 27 C -0.162 4.162 28 C -0.178 4.178 29 C 0.014 3.986 30 H 0.067 0.933 31 H 0.186 0.814 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.196 0.804 45 H 0.106 0.894 46 H 0.111 0.889 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.109 0.891 50 H 0.099 0.901 51 H 0.098 0.902 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.090 -19.077 -5.062 27.459 hybrid contribution 1.070 2.052 -0.266 2.330 sum 20.160 -17.025 -5.328 26.919 Atomic orbital electron populations 1.69704 1.05043 1.25451 1.58697 1.24652 0.95209 0.96935 1.02823 0.86564 0.79216 0.85304 0.77604 1.21246 1.21881 1.20472 1.19071 0.80661 0.94646 1.41347 0.89291 1.42984 1.04173 1.02467 1.91338 1.21251 0.85867 0.87317 1.01101 1.21577 0.94486 0.83616 0.96942 0.91531 1.21939 0.95085 1.01615 0.97935 1.21551 0.96103 0.96391 1.01830 1.21910 1.00593 0.97037 0.97675 1.21694 0.81154 1.01313 0.97263 1.48165 1.08320 1.06649 1.71622 1.20739 0.88613 0.84518 0.77077 1.90860 1.13755 1.85152 1.47743 1.19928 0.96564 0.89843 1.03360 1.18933 1.08607 1.03222 0.92299 1.23725 0.96063 0.94283 0.98398 1.77245 1.20249 1.21775 0.92525 1.48466 1.35743 1.26978 1.04109 1.20630 0.94405 0.91856 0.95238 1.20471 1.02770 0.99343 0.87449 1.21655 0.96492 0.97685 1.00336 1.21981 0.98738 1.03322 0.93723 1.21743 0.93941 0.90312 0.92587 0.93302 0.81365 0.93369 0.93871 0.91355 0.90539 0.91986 0.91894 0.91076 0.91505 0.91562 0.89871 0.89118 0.88603 0.80374 0.89375 0.88902 0.91374 0.90231 0.89117 0.90145 0.90201 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.99 13.97 55.49 0.78 -30.21 16 2 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 3 Si 0.88 22.97 27.74 -169.99 -4.71 18.25 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 7 C -0.23 -6.92 10.47 -15.06 -0.16 -7.07 16 8 H 0.09 2.97 8.06 -52.48 -0.42 2.55 16 9 N -0.76 -19.52 5.08 -59.91 -0.30 -19.83 16 10 C 0.17 3.78 4.10 -4.04 -0.02 3.76 16 11 C 0.14 2.26 3.04 -67.60 -0.21 2.05 16 12 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.13 -1.89 5.12 -26.61 -0.14 -2.02 16 14 C -0.12 -1.29 5.88 -26.69 -0.16 -1.45 16 15 C -0.13 -1.13 6.08 -26.61 -0.16 -1.29 16 16 C 0.11 0.95 6.33 -3.71 -0.02 0.93 16 17 N -0.61 -8.09 2.97 -165.22 -0.49 -8.58 16 18 C 0.50 7.36 7.60 -10.98 -0.08 7.28 16 19 O -0.50 -9.94 11.44 5.56 0.06 -9.88 16 20 C -0.06 -0.58 4.39 -29.03 -0.13 -0.71 16 21 C -0.22 -2.84 4.59 -105.17 -0.48 -3.32 16 22 C 0.06 0.84 11.97 -17.21 -0.21 0.64 16 23 N -0.30 -4.52 12.62 30.70 0.39 -4.13 16 24 N -0.37 -4.90 4.04 -56.93 -0.23 -5.13 16 25 C 0.11 1.35 6.59 -82.22 -0.54 0.80 16 26 C -0.06 -0.59 6.02 -27.57 -0.17 -0.76 16 27 C -0.12 -0.90 5.97 -26.42 -0.16 -1.06 16 28 C -0.14 -1.08 5.93 -26.51 -0.16 -1.24 16 29 C 0.14 1.28 7.28 -3.85 -0.03 1.25 16 30 H 0.26 8.03 8.31 -40.82 -0.34 7.70 16 31 H 0.35 8.63 4.66 -40.82 -0.19 8.44 16 32 H 0.05 1.20 6.45 -51.93 -0.33 0.86 16 33 H 0.04 1.05 7.04 -51.93 -0.37 0.68 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.26 7.20 -51.93 -0.37 0.88 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.51 5.96 -51.93 -0.31 0.20 16 42 H 0.09 0.71 7.21 -51.93 -0.37 0.34 16 43 H 0.10 0.78 8.12 -51.93 -0.42 0.36 16 44 H 0.18 1.97 8.06 -52.49 -0.42 1.55 16 45 H 0.09 0.67 7.94 -51.93 -0.41 0.25 16 46 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 51 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 52 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -38.76 398.38 -10.13 -48.89 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -8.71 Total: 6.97 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.90 Total: -2.36 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: 0.14 Total: -67.88 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.06 Total: -9.88 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.71 Total: 18.25 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.76 -10.13 -48.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700344607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.564 kcal (2) G-P(sol) polarization free energy of solvation -38.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds