Wall clock time and date at job start Wed Apr 1 2020 04:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35039 * 126.39720 * 2 1 4 4 N 1.30498 * 108.69959 * 179.97438 * 3 2 1 5 5 C 1.34134 * 109.25509 * 359.75390 * 4 3 2 6 6 C 1.34670 * 108.01883 * 0.39642 * 5 4 3 7 7 C 1.50696 * 126.58650 * 179.87631 * 6 5 4 8 8 H 1.09005 * 110.30282 * 205.40955 * 7 6 5 9 9 C 1.54380 * 110.34371 * 83.23471 * 7 6 5 10 10 N 1.48147 * 104.61993 * 217.15154 * 9 7 6 11 11 C 1.34768 * 127.84289 * 219.58394 * 10 9 7 12 12 O 1.21279 * 120.00140 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00281 * 179.97438 * 11 10 9 14 14 H 1.08997 * 112.84939 * 70.49654 * 13 11 10 15 15 C 1.53784 * 113.68928 * 299.22925 * 13 11 10 16 16 C 1.53790 * 87.08000 * 220.00453 * 15 13 11 17 17 C 1.53783 * 113.61566 * 201.69406 * 13 11 10 18 18 C 1.52997 * 113.61363 * 254.61324 * 17 13 11 19 19 C 1.52994 * 113.61500 * 25.42962 * 17 13 11 20 20 C 1.48154 * 104.31879 * 39.84626 * 10 9 7 21 21 C 1.54282 * 110.43365 * 327.64182 * 7 6 5 22 22 H 1.08996 * 110.34514 * 0.04407 * 21 7 6 23 23 N 1.46504 * 110.34277 * 237.89421 * 21 7 6 24 24 C 1.36936 * 120.00217 * 155.00142 * 23 21 7 25 25 H 1.08004 * 119.99780 * 359.97438 * 24 23 21 26 26 C 1.38812 * 120.00255 * 180.02562 * 24 23 21 27 27 N 1.31618 * 119.99793 * 180.02562 * 26 24 23 28 28 Si 1.86793 * 120.00037 * 359.97438 * 26 24 23 29 29 H 1.48502 * 109.46854 * 90.00300 * 28 26 24 30 30 H 1.48494 * 109.47423 * 210.00152 * 28 26 24 31 31 H 1.48501 * 109.47295 * 330.00949 * 28 26 24 32 32 H 1.09006 * 109.47065 * 270.00288 * 1 2 3 33 33 H 1.09001 * 109.46806 * 30.00474 * 1 2 3 34 34 H 1.08994 * 109.47295 * 150.00715 * 1 2 3 35 35 H 1.08001 * 125.65100 * 359.97438 * 3 2 1 36 36 H 1.08005 * 125.98834 * 180.24651 * 5 4 3 37 37 H 1.08999 * 110.41175 * 98.36925 * 9 7 6 38 38 H 1.09002 * 110.51074 * 335.98745 * 9 7 6 39 39 H 1.09001 * 113.61278 * 334.55445 * 15 13 11 40 40 H 1.08995 * 113.61606 * 105.46152 * 15 13 11 41 41 H 1.08998 * 113.61496 * 270.88697 * 16 15 13 42 42 H 1.08995 * 113.68755 * 139.98840 * 16 15 13 43 43 H 1.08999 * 109.47104 * 59.99903 * 18 17 13 44 44 H 1.08996 * 109.47598 * 180.02562 * 18 17 13 45 45 H 1.08999 * 109.47430 * 300.00142 * 18 17 13 46 46 H 1.09008 * 109.47094 * 46.29314 * 19 17 13 47 47 H 1.09001 * 109.47261 * 166.28614 * 19 17 13 48 48 H 1.08998 * 109.47755 * 286.29242 * 19 17 13 49 49 H 1.08992 * 110.40637 * 78.94144 * 20 10 9 50 50 H 1.08998 * 110.40236 * 201.36897 * 20 10 9 51 51 H 0.96999 * 120.00230 * 334.99921 * 23 21 7 52 52 H 0.97006 * 119.99684 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6903 0.0006 5 6 3.5460 -0.6506 0.0064 6 6 2.2772 -1.1018 0.0007 7 6 1.8364 -2.5429 0.0014 8 1 0.8450 -2.6354 -0.4422 9 6 1.8349 -3.1029 1.4401 10 7 2.3011 -4.5018 1.2972 11 6 1.8519 -5.5935 1.9474 12 8 0.9590 -5.4898 2.7615 13 6 2.4583 -6.9433 1.6621 14 1 3.4758 -7.0389 2.0412 15 6 2.3006 -7.3951 0.2006 16 6 2.0208 -8.8044 0.7489 17 6 1.5460 -8.1214 2.0423 18 6 1.9830 -8.8488 3.3154 19 6 0.0572 -7.7690 2.0408 20 6 3.3777 -4.4275 0.2821 21 6 2.8507 -3.4168 -0.7652 22 1 3.6696 -2.8044 -1.1425 23 7 2.1884 -4.1162 -1.8691 24 6 2.9140 -4.5174 -2.9589 25 1 3.9744 -4.3178 -3.0049 26 6 2.2864 -5.1795 -4.0051 27 7 2.9840 -5.5655 -5.0524 28 14 0.4522 -5.5241 -3.9260 29 1 -0.2912 -4.3880 -4.5276 30 1 0.1492 -6.7678 -4.6786 31 1 0.0404 -5.6901 -2.5090 32 1 -0.3633 0.0001 1.0277 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3633 -0.8900 -0.5137 35 1 1.9335 2.1144 -0.0004 36 1 4.4369 -1.2612 0.0119 37 1 0.8278 -3.0786 1.8564 38 1 2.5199 -2.5366 2.0711 39 1 1.4460 -6.9458 -0.3055 40 1 3.2210 -7.3270 -0.3793 41 1 2.9186 -9.4087 0.8784 42 1 1.2285 -9.3317 0.2175 43 1 1.9786 -8.1507 4.1525 44 1 1.2933 -9.6675 3.5211 45 1 2.9885 -9.2469 3.1796 46 1 -0.1842 -7.2156 1.1332 47 1 -0.5330 -8.6847 2.0757 48 1 -0.1720 -7.1555 2.9121 49 1 4.3010 -4.0643 0.7333 50 1 3.5359 -5.4037 -0.1762 51 1 1.2360 -4.2952 -1.8280 52 1 2.5455 -6.0286 -5.7833 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070679708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:21 Heat of formation + Delta-G solvation = 73.050706 kcal Electronic energy + Delta-G solvation = -32550.013748 eV Core-core repulsion = 28552.053347 eV Total energy + Delta-G solvation = -3997.960402 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.07436 -40.65937 -38.65080 -37.03383 -34.11549 -33.98715 -32.38384 -31.06488 -30.50566 -28.23954 -27.86208 -27.29731 -26.99465 -26.42064 -24.04473 -22.85048 -22.39616 -21.62253 -20.45039 -19.62607 -19.39564 -17.99183 -17.77938 -17.00069 -16.75749 -15.77078 -15.63796 -15.41050 -15.09026 -14.58990 -14.43403 -14.19549 -13.99615 -13.72137 -13.50934 -13.36851 -13.13575 -13.00105 -12.90383 -12.77388 -12.69519 -12.30682 -12.27253 -12.07887 -11.97017 -11.76355 -11.47022 -11.26439 -11.04655 -10.98786 -10.95204 -10.82067 -10.67450 -10.28000 -10.23569 -9.92389 -9.81652 -9.70678 -9.49120 -9.24380 -9.15418 -8.50790 -8.18820 -7.38217 -5.88427 -3.25666 2.10127 2.78724 2.89575 3.18961 3.26440 3.29355 3.30173 3.36637 4.45559 4.47307 4.54425 4.63159 4.63528 4.68100 4.76293 4.86306 4.92172 4.95290 4.99701 5.18631 5.22795 5.25650 5.30661 5.40134 5.45626 5.50165 5.54965 5.67162 5.68902 5.75033 5.78297 5.80944 5.82092 5.94431 5.95795 5.99183 6.03590 6.07140 6.17797 6.21538 6.28732 6.37238 6.37592 6.47981 6.53171 6.65773 6.68069 6.86706 7.25292 7.82022 7.86193 8.17556 8.29685 8.43007 9.05985 9.78568 9.96470 11.29208 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008138 B = 0.004918 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3439.759346 B = 5692.488909 C = 7903.249997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.459 5.459 3 C 0.172 3.828 4 N -0.493 5.493 5 C -0.019 4.019 6 C 0.001 3.999 7 C -0.040 4.040 8 H 0.085 0.915 9 C 0.119 3.881 10 N -0.614 5.614 11 C 0.547 3.453 12 O -0.551 6.551 13 C -0.124 4.124 14 H 0.112 0.888 15 C -0.120 4.120 16 C -0.136 4.136 17 C -0.060 4.060 18 C -0.134 4.134 19 C -0.128 4.128 20 C 0.067 3.933 21 C 0.185 3.815 22 H 0.085 0.915 23 N -0.736 5.736 24 C -0.248 4.248 25 H 0.094 0.906 26 C 0.014 3.986 27 N -0.927 5.927 28 Si 0.877 3.123 29 H -0.286 1.286 30 H -0.290 1.290 31 H -0.277 1.277 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.201 0.799 36 H 0.170 0.830 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.047 0.953 48 H 0.082 0.918 49 H 0.065 0.935 50 H 0.098 0.902 51 H 0.360 0.640 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.020 2.971 14.614 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.142 5.142 3 C -0.110 4.110 4 N -0.211 5.211 5 C -0.167 4.167 6 C -0.114 4.114 7 C -0.061 4.061 8 H 0.103 0.897 9 C -0.005 4.005 10 N -0.347 5.347 11 C 0.337 3.663 12 O -0.429 6.429 13 C -0.145 4.145 14 H 0.130 0.870 15 C -0.158 4.158 16 C -0.173 4.173 17 C -0.060 4.060 18 C -0.191 4.191 19 C -0.185 4.185 20 C -0.059 4.059 21 C 0.073 3.927 22 H 0.103 0.897 23 N -0.377 5.377 24 C -0.377 4.377 25 H 0.112 0.888 26 C -0.183 4.183 27 N -0.574 5.574 28 Si 0.707 3.293 29 H -0.213 1.213 30 H -0.216 1.216 31 H -0.203 1.203 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.218 0.782 36 H 0.187 0.813 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.101 0.899 49 H 0.083 0.917 50 H 0.116 0.884 51 H 0.194 0.806 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.821 3.398 14.886 15.740 hybrid contribution -2.077 -0.641 -0.279 2.192 sum -5.898 2.757 14.607 15.992 Atomic orbital electron populations 1.22034 0.76978 1.04812 1.03405 1.45252 1.07434 1.06784 1.54774 1.24830 0.85770 0.93224 1.07137 1.70260 1.19304 1.12107 1.19384 1.22023 0.95789 0.90827 1.08067 1.20941 0.91175 0.88752 1.10572 1.20863 1.01233 0.87717 0.96323 0.89694 1.22224 1.00665 0.82218 0.95378 1.48962 1.37594 1.06436 1.41718 1.20173 0.82106 0.84504 0.79478 1.90600 1.31128 1.85852 1.35329 1.22856 1.00690 0.91200 0.99754 0.87038 1.22850 1.03657 0.95672 0.93618 1.23052 1.01308 0.96639 0.96333 1.21656 0.95546 0.93892 0.94944 1.21714 1.00616 0.99821 0.96929 1.21715 0.92720 1.00636 1.03444 1.23725 0.89139 1.03853 0.89147 1.21204 0.93686 0.90664 0.87192 0.89701 1.42787 1.07350 1.68973 1.18593 1.19033 0.94179 1.30726 0.93786 0.88813 1.24613 0.96899 1.00373 0.96406 1.69685 1.34790 1.44343 1.08566 0.86687 0.87445 0.77871 0.77263 1.21264 1.21618 1.20348 0.90589 0.89473 0.89576 0.78206 0.81310 0.90601 0.90997 0.89465 0.89827 0.89959 0.91206 0.92434 0.92628 0.92716 0.93148 0.93436 0.89933 0.91698 0.88376 0.80633 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 11.01 59.85 0.66 1.25 16 2 N -0.46 -5.55 3.15 -121.36 -0.38 -5.93 16 3 C 0.17 2.12 12.56 -90.38 -1.14 0.98 16 4 N -0.49 -7.57 11.25 -14.66 -0.16 -7.74 16 5 C -0.02 -0.29 10.68 -17.81 -0.19 -0.48 16 6 C 0.00 0.01 5.80 -81.60 -0.47 -0.47 16 7 C -0.04 -0.57 3.09 -90.38 -0.28 -0.85 16 8 H 0.08 1.28 6.69 -51.93 -0.35 0.93 16 9 C 0.12 1.64 6.57 -2.41 -0.02 1.63 16 10 N -0.61 -9.20 3.31 -169.06 -0.56 -9.76 16 11 C 0.55 8.69 6.87 -10.99 -0.08 8.61 16 12 O -0.55 -9.90 13.96 5.56 0.08 -9.83 16 13 C -0.12 -1.70 3.13 -90.96 -0.28 -1.99 16 14 H 0.11 1.36 8.10 -51.93 -0.42 0.94 16 15 C -0.12 -1.77 5.79 -25.91 -0.15 -1.92 16 16 C -0.14 -1.71 7.23 -25.91 -0.19 -1.89 16 17 C -0.06 -0.77 1.20 -153.70 -0.18 -0.95 16 18 C -0.13 -1.47 9.19 37.16 0.34 -1.12 16 19 C -0.13 -1.80 7.63 37.15 0.28 -1.51 16 20 C 0.07 1.00 6.56 -2.19 -0.01 0.99 16 21 C 0.18 3.08 3.20 -66.32 -0.21 2.87 16 22 H 0.09 1.48 6.32 -51.93 -0.33 1.15 16 23 N -0.74 -15.34 4.94 -51.86 -0.26 -15.59 16 24 C -0.25 -6.28 10.44 -15.06 -0.16 -6.44 16 25 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 26 C 0.01 0.37 5.50 -17.43 -0.10 0.28 16 27 N -0.93 -27.48 13.97 55.49 0.78 -26.70 16 28 Si 0.88 20.92 27.73 -169.99 -4.71 16.21 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 31 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.77 7.16 -51.93 -0.37 0.40 16 35 H 0.20 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.17 2.34 7.44 -52.48 -0.39 1.95 16 37 H 0.08 1.07 7.88 -51.93 -0.41 0.66 16 38 H 0.07 0.95 7.86 -51.93 -0.41 0.54 16 39 H 0.09 1.51 7.55 -51.93 -0.39 1.11 16 40 H 0.08 1.26 7.25 -51.93 -0.38 0.89 16 41 H 0.08 0.91 7.96 -51.93 -0.41 0.49 16 42 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.53 7.94 -51.93 -0.41 0.12 16 46 H 0.05 0.78 7.16 -51.92 -0.37 0.41 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 1.27 6.23 -51.93 -0.32 0.95 16 49 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.10 1.59 5.26 -51.93 -0.27 1.32 16 51 H 0.36 7.68 5.42 -40.82 -0.22 7.46 16 52 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 403.12 15.07 6.07 6.07 Total: -1.00 -32.24 403.12 -9.76 -41.99 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -8.43 Total: 12.31 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.17 Total: -1.03 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.59 Total: -65.73 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.71 Total: 16.21 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.24 -9.76 -41.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070679708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.043 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds