Wall clock time and date at job start Wed Apr 1 2020 04:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35039 * 126.39720 * 2 1 4 4 N 1.30498 * 108.69959 * 179.97438 * 3 2 1 5 5 C 1.34134 * 109.25509 * 359.75390 * 4 3 2 6 6 C 1.34670 * 108.01883 * 0.39642 * 5 4 3 7 7 C 1.50696 * 126.58650 * 179.87631 * 6 5 4 8 8 H 1.09005 * 110.30282 * 205.40955 * 7 6 5 9 9 C 1.54380 * 110.34371 * 83.23471 * 7 6 5 10 10 N 1.48147 * 104.61993 * 217.15154 * 9 7 6 11 11 C 1.34768 * 127.84289 * 219.58394 * 10 9 7 12 12 O 1.21279 * 120.00140 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00281 * 179.97438 * 11 10 9 14 14 H 1.08997 * 112.84939 * 70.49654 * 13 11 10 15 15 C 1.53784 * 113.68928 * 299.22925 * 13 11 10 16 16 C 1.53790 * 87.08000 * 220.00453 * 15 13 11 17 17 C 1.53783 * 113.61566 * 201.69406 * 13 11 10 18 18 C 1.52997 * 113.61363 * 254.61324 * 17 13 11 19 19 C 1.52994 * 113.61500 * 25.42962 * 17 13 11 20 20 C 1.48154 * 104.31879 * 39.84626 * 10 9 7 21 21 C 1.54282 * 110.43365 * 327.64182 * 7 6 5 22 22 H 1.08996 * 110.34514 * 0.04407 * 21 7 6 23 23 N 1.46504 * 110.34277 * 237.89421 * 21 7 6 24 24 C 1.36936 * 120.00217 * 155.00142 * 23 21 7 25 25 H 1.08004 * 119.99780 * 359.97438 * 24 23 21 26 26 C 1.38812 * 120.00255 * 180.02562 * 24 23 21 27 27 N 1.31618 * 119.99793 * 180.02562 * 26 24 23 28 28 Si 1.86793 * 120.00037 * 359.97438 * 26 24 23 29 29 H 1.48502 * 109.46854 * 90.00300 * 28 26 24 30 30 H 1.48494 * 109.47423 * 210.00152 * 28 26 24 31 31 H 1.48501 * 109.47295 * 330.00949 * 28 26 24 32 32 H 1.09006 * 109.47065 * 270.00288 * 1 2 3 33 33 H 1.09001 * 109.46806 * 30.00474 * 1 2 3 34 34 H 1.08994 * 109.47295 * 150.00715 * 1 2 3 35 35 H 1.08001 * 125.65100 * 359.97438 * 3 2 1 36 36 H 1.08005 * 125.98834 * 180.24651 * 5 4 3 37 37 H 1.08999 * 110.41175 * 98.36925 * 9 7 6 38 38 H 1.09002 * 110.51074 * 335.98745 * 9 7 6 39 39 H 1.09001 * 113.61278 * 334.55445 * 15 13 11 40 40 H 1.08995 * 113.61606 * 105.46152 * 15 13 11 41 41 H 1.08998 * 113.61496 * 270.88697 * 16 15 13 42 42 H 1.08995 * 113.68755 * 139.98840 * 16 15 13 43 43 H 1.08999 * 109.47104 * 59.99903 * 18 17 13 44 44 H 1.08996 * 109.47598 * 180.02562 * 18 17 13 45 45 H 1.08999 * 109.47430 * 300.00142 * 18 17 13 46 46 H 1.09008 * 109.47094 * 46.29314 * 19 17 13 47 47 H 1.09001 * 109.47261 * 166.28614 * 19 17 13 48 48 H 1.08998 * 109.47755 * 286.29242 * 19 17 13 49 49 H 1.08992 * 110.40637 * 78.94144 * 20 10 9 50 50 H 1.08998 * 110.40236 * 201.36897 * 20 10 9 51 51 H 0.96999 * 120.00230 * 334.99921 * 23 21 7 52 52 H 0.97006 * 119.99684 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6903 0.0006 5 6 3.5460 -0.6506 0.0064 6 6 2.2772 -1.1018 0.0007 7 6 1.8364 -2.5429 0.0014 8 1 0.8450 -2.6354 -0.4422 9 6 1.8349 -3.1029 1.4401 10 7 2.3011 -4.5018 1.2972 11 6 1.8519 -5.5935 1.9474 12 8 0.9590 -5.4898 2.7615 13 6 2.4583 -6.9433 1.6621 14 1 3.4758 -7.0389 2.0412 15 6 2.3006 -7.3951 0.2006 16 6 2.0208 -8.8044 0.7489 17 6 1.5460 -8.1214 2.0423 18 6 1.9830 -8.8488 3.3154 19 6 0.0572 -7.7690 2.0408 20 6 3.3777 -4.4275 0.2821 21 6 2.8507 -3.4168 -0.7652 22 1 3.6696 -2.8044 -1.1425 23 7 2.1884 -4.1162 -1.8691 24 6 2.9140 -4.5174 -2.9589 25 1 3.9744 -4.3178 -3.0049 26 6 2.2864 -5.1795 -4.0051 27 7 2.9840 -5.5655 -5.0524 28 14 0.4522 -5.5241 -3.9260 29 1 -0.2912 -4.3880 -4.5276 30 1 0.1492 -6.7678 -4.6786 31 1 0.0404 -5.6901 -2.5090 32 1 -0.3633 0.0001 1.0277 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3633 -0.8900 -0.5137 35 1 1.9335 2.1144 -0.0004 36 1 4.4369 -1.2612 0.0119 37 1 0.8278 -3.0786 1.8564 38 1 2.5199 -2.5366 2.0711 39 1 1.4460 -6.9458 -0.3055 40 1 3.2210 -7.3270 -0.3793 41 1 2.9186 -9.4087 0.8784 42 1 1.2285 -9.3317 0.2175 43 1 1.9786 -8.1507 4.1525 44 1 1.2933 -9.6675 3.5211 45 1 2.9885 -9.2469 3.1796 46 1 -0.1842 -7.2156 1.1332 47 1 -0.5330 -8.6847 2.0757 48 1 -0.1720 -7.1555 2.9121 49 1 4.3010 -4.0643 0.7333 50 1 3.5359 -5.4037 -0.1762 51 1 1.2360 -4.2952 -1.8280 52 1 2.5455 -6.0286 -5.7833 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070679708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:20 Heat of formation + Delta-G solvation = 54.959501 kcal Electronic energy + Delta-G solvation = -32550.798242 eV Core-core repulsion = 28552.053347 eV Total energy + Delta-G solvation = -3998.744895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.09675 -41.81841 -39.86633 -38.33170 -35.84398 -34.91973 -33.78194 -32.79231 -31.55061 -29.44914 -29.21512 -28.31116 -27.79728 -27.54613 -25.64082 -24.24923 -23.50127 -22.77010 -21.66469 -20.89473 -20.60233 -19.47097 -19.09338 -18.18788 -17.93351 -16.98297 -16.71204 -16.54618 -16.48628 -16.05446 -15.69539 -15.44793 -15.23101 -14.83944 -14.71560 -14.57296 -14.42448 -14.15800 -14.07926 -13.81964 -13.71023 -13.63919 -13.44265 -13.29964 -13.18463 -12.96532 -12.77017 -12.53224 -12.46162 -12.42740 -12.36411 -12.11172 -11.93205 -11.79252 -11.74088 -11.32977 -11.09641 -10.96988 -10.89361 -10.46238 -10.42555 -9.86027 -9.39843 -9.09619 -7.99651 -5.32436 1.08367 1.34567 1.35199 1.42772 1.64255 1.87621 2.03949 2.23495 2.46829 3.28298 3.36077 3.38865 3.45958 3.57807 3.69025 3.75083 3.85493 3.87456 3.93827 3.99831 4.08163 4.16269 4.31350 4.33993 4.40895 4.48744 4.54687 4.57845 4.62071 4.64534 4.67711 4.72358 4.76671 4.84235 4.90094 4.92722 4.97337 4.98706 5.02639 5.11202 5.13344 5.22288 5.27246 5.37151 5.43891 5.51333 5.57057 5.78611 5.81796 6.23364 6.34864 6.58622 7.07889 7.15480 7.18442 7.82661 8.00363 9.21396 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008138 B = 0.004918 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3439.759346 B = 5692.488909 C = 7903.249997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.459 5.459 3 C 0.183 3.817 4 N -0.532 5.532 5 C -0.037 4.037 6 C -0.011 4.011 7 C -0.023 4.023 8 H 0.080 0.920 9 C 0.125 3.875 10 N -0.615 5.615 11 C 0.542 3.458 12 O -0.573 6.573 13 C -0.121 4.121 14 H 0.132 0.868 15 C -0.124 4.124 16 C -0.126 4.126 17 C -0.060 4.060 18 C -0.129 4.129 19 C -0.123 4.123 20 C 0.077 3.923 21 C 0.179 3.821 22 H 0.078 0.922 23 N -0.737 5.737 24 C -0.216 4.216 25 H 0.069 0.931 26 C -0.049 4.049 27 N -0.977 5.977 28 Si 0.936 3.064 29 H -0.286 1.286 30 H -0.300 1.300 31 H -0.259 1.259 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.241 0.759 36 H 0.169 0.831 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.027 0.973 47 H 0.063 0.937 48 H 0.067 0.933 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.360 0.640 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.978 3.374 16.697 17.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.141 5.141 3 C -0.099 4.099 4 N -0.251 5.251 5 C -0.184 4.184 6 C -0.127 4.127 7 C -0.044 4.044 8 H 0.098 0.902 9 C 0.002 3.998 10 N -0.347 5.347 11 C 0.333 3.667 12 O -0.454 6.454 13 C -0.142 4.142 14 H 0.150 0.850 15 C -0.162 4.162 16 C -0.163 4.163 17 C -0.060 4.060 18 C -0.186 4.186 19 C -0.180 4.180 20 C -0.048 4.048 21 C 0.069 3.931 22 H 0.096 0.904 23 N -0.379 5.379 24 C -0.346 4.346 25 H 0.086 0.914 26 C -0.241 4.241 27 N -0.628 5.628 28 Si 0.766 3.234 29 H -0.213 1.213 30 H -0.227 1.227 31 H -0.184 1.184 32 H 0.112 0.888 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.257 0.743 36 H 0.186 0.814 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.046 0.954 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.109 0.891 50 H 0.105 0.895 51 H 0.193 0.807 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.798 3.831 17.031 18.104 hybrid contribution -1.739 -0.626 -0.877 2.046 sum -6.537 3.205 16.154 17.719 Atomic orbital electron populations 1.22332 0.74675 1.05823 1.04966 1.45468 1.08839 1.06004 1.53815 1.25611 0.85020 0.94692 1.04606 1.70238 1.21302 1.12233 1.21309 1.22158 0.96329 0.91217 1.08730 1.20784 0.91385 0.88978 1.11583 1.20583 0.99942 0.87814 0.96067 0.90187 1.22229 1.00926 0.81636 0.95015 1.49014 1.37476 1.06886 1.41358 1.20574 0.81806 0.85227 0.79124 1.90593 1.32090 1.86247 1.36441 1.22963 1.01882 0.90370 0.98955 0.85029 1.22741 1.01961 0.97542 0.93944 1.23060 1.02196 0.95479 0.95559 1.21666 0.94511 0.93612 0.96228 1.21681 1.01859 0.99728 0.95316 1.21638 0.94118 1.00797 1.01476 1.23533 0.89991 1.02599 0.88726 1.21362 0.94040 0.91070 0.86675 0.90376 1.42746 1.07170 1.69276 1.18662 1.18971 0.93248 1.28108 0.94323 0.91356 1.25214 1.00746 1.01652 0.96525 1.69841 1.36494 1.46749 1.09729 0.85700 0.82825 0.76973 0.77906 1.21272 1.22701 1.18416 0.88750 0.86714 0.90387 0.74306 0.81388 0.90638 0.89893 0.92447 0.90662 0.87746 0.91259 0.93119 0.91529 0.91019 0.95422 0.91799 0.91422 0.89114 0.89545 0.80669 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.87 11.01 127.77 1.41 2.28 16 2 N -0.46 -10.07 3.15 -537.88 -1.70 -11.77 16 3 C 0.18 4.05 12.56 180.26 2.26 6.32 16 4 N -0.53 -15.75 11.25 -200.31 -2.25 -18.00 16 5 C -0.04 -1.08 10.68 83.52 0.89 -0.19 16 6 C -0.01 -0.31 5.80 40.95 0.24 -0.07 16 7 C -0.02 -0.62 3.09 -10.64 -0.03 -0.66 16 8 H 0.08 2.32 6.69 -2.38 -0.02 2.31 16 9 C 0.13 3.29 6.57 86.53 0.57 3.86 16 10 N -0.61 -17.76 3.31 -807.18 -2.67 -20.43 16 11 C 0.54 16.66 6.87 87.66 0.60 17.26 16 12 O -0.57 -20.19 13.96 -3.03 -0.04 -20.24 16 13 C -0.12 -3.15 3.13 -11.01 -0.03 -3.18 16 14 H 0.13 2.89 8.10 -2.39 -0.02 2.87 16 15 C -0.12 -3.57 5.79 31.12 0.18 -3.39 16 16 C -0.13 -2.92 7.23 31.12 0.22 -2.69 16 17 C -0.06 -1.43 1.20 -51.66 -0.06 -1.49 16 18 C -0.13 -2.47 9.19 71.98 0.66 -1.81 16 19 C -0.12 -3.34 7.63 71.98 0.55 -2.80 16 20 C 0.08 2.22 6.56 86.67 0.57 2.79 16 21 C 0.18 5.90 3.20 46.03 0.15 6.04 16 22 H 0.08 2.73 6.32 -2.39 -0.02 2.71 16 23 N -0.74 -30.69 4.94 -318.00 -1.57 -32.26 16 24 C -0.22 -11.12 10.44 84.03 0.88 -10.25 16 25 H 0.07 3.85 8.06 -2.91 -0.02 3.82 16 26 C -0.05 -2.74 5.50 84.86 0.47 -2.27 16 27 N -0.98 -59.74 13.97 21.65 0.30 -59.44 16 28 Si 0.94 43.95 27.73 68.60 1.90 45.85 16 29 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 30 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 31 H -0.26 -11.18 6.52 99.48 0.65 -10.53 16 32 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.23 7.16 -2.39 -0.02 1.22 16 35 H 0.24 3.02 8.06 -2.91 -0.02 2.99 16 36 H 0.17 4.68 7.44 -2.91 -0.02 4.66 16 37 H 0.08 2.03 7.88 -2.39 -0.02 2.01 16 38 H 0.08 2.04 7.86 -2.39 -0.02 2.02 16 39 H 0.06 1.99 7.55 -2.39 -0.02 1.98 16 40 H 0.07 2.26 7.25 -2.39 -0.02 2.24 16 41 H 0.10 1.99 7.96 -2.39 -0.02 1.97 16 42 H 0.07 1.63 8.10 -2.39 -0.02 1.61 16 43 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.14 7.94 -2.39 -0.02 1.12 16 46 H 0.03 0.85 7.16 -2.38 -0.02 0.83 16 47 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.07 2.04 6.23 -2.39 -0.01 2.03 16 49 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.09 2.77 5.26 -2.39 -0.01 2.75 16 51 H 0.36 15.15 5.42 -92.71 -0.50 14.64 16 52 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -71.54 403.12 3.85 -67.69 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: 0.36 Total: 38.85 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 9.52 Total: 9.75 kcal Atomic # 7 Polarization: -134.02 SS G_CDS: -7.89 Total: -141.91 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.04 Total: -20.24 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.90 Total: 45.85 kcal Total: -71.54 3.85 -67.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070679708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.650 kcal (2) G-P(sol) polarization free energy of solvation -71.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds