Wall clock time and date at job start Wed Apr 1 2020 04:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38623 * 120.32028 * 2 1 4 4 C 1.38592 * 118.48481 * 179.70830 * 3 2 1 5 5 C 1.39310 * 119.05730 * 0.54826 * 4 3 2 6 6 C 1.48171 * 119.72154 * 179.70962 * 5 4 3 7 7 O 1.21516 * 120.00260 * 6.51300 * 6 5 4 8 8 N 1.34777 * 120.00005 * 186.51230 * 6 5 4 9 9 C 1.46500 * 119.99888 * 4.80225 * 8 6 5 10 10 C 1.46503 * 120.00391 * 184.80477 * 8 6 5 11 11 C 1.52999 * 109.46982 * 89.99642 * 10 8 6 12 12 N 1.46904 * 109.46894 * 180.02562 * 11 10 8 13 13 C 1.46899 * 111.00011 * 170.00139 * 12 11 10 14 14 C 1.53236 * 109.33868 * 172.74942 * 13 12 11 15 15 N 1.47080 * 108.52580 * 53.82646 * 14 13 12 16 16 C 1.36937 * 120.88061 * 128.79330 * 15 14 13 17 17 H 1.07998 * 120.00226 * 213.37572 * 16 15 14 18 18 C 1.38812 * 119.99891 * 33.37339 * 16 15 14 19 19 N 1.31618 * 120.00225 * 13.92895 * 18 16 15 20 20 Si 1.86801 * 119.99855 * 193.92916 * 18 16 15 21 21 H 1.48500 * 109.47157 * 89.99968 * 20 18 16 22 22 H 1.48499 * 109.47101 * 209.99951 * 20 18 16 23 23 H 1.48496 * 109.47262 * 330.00122 * 20 18 16 24 24 C 1.47075 * 118.23578 * 308.81770 * 15 14 13 25 25 C 1.46903 * 110.99794 * 45.70000 * 12 11 10 26 26 N 1.32716 * 120.55276 * 359.43887 * 5 4 3 27 27 C 1.31515 * 121.64351 * 0.27417 * 26 5 4 28 28 C 1.50706 * 119.54998 * 180.02562 * 27 26 5 29 29 H 1.09003 * 109.46999 * 270.02489 * 1 2 3 30 30 H 1.09001 * 109.47087 * 30.02253 * 1 2 3 31 31 H 1.08995 * 109.47151 * 150.02212 * 1 2 3 32 32 H 1.08000 * 120.75974 * 359.97425 * 3 2 1 33 33 H 1.08005 * 120.47510 * 180.28569 * 4 3 2 34 34 H 1.08998 * 109.47142 * 276.16759 * 9 8 6 35 35 H 1.08997 * 109.47490 * 36.16615 * 9 8 6 36 36 H 1.09000 * 109.47278 * 156.16740 * 9 8 6 37 37 H 1.09002 * 109.46682 * 330.00174 * 10 8 6 38 38 H 1.08999 * 109.47143 * 210.00181 * 10 8 6 39 39 H 1.08993 * 109.47087 * 60.00573 * 11 10 8 40 40 H 1.08992 * 109.47247 * 300.00117 * 11 10 8 41 41 H 1.08996 * 109.49127 * 52.78252 * 13 12 11 42 42 H 1.08996 * 109.49162 * 292.70525 * 13 12 11 43 43 H 1.08997 * 109.62720 * 173.53972 * 14 13 12 44 44 H 1.09005 * 109.62637 * 293.91861 * 14 13 12 45 45 H 0.97001 * 120.00380 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.62843 * 170.89166 * 24 15 14 47 47 H 1.09000 * 109.63041 * 291.47265 * 24 15 14 48 48 H 1.09002 * 109.49282 * 67.29391 * 25 12 11 49 49 H 1.09002 * 109.49452 * 307.21233 * 25 12 11 50 50 H 1.08995 * 109.47255 * 89.99522 * 28 27 26 51 51 H 1.08992 * 109.46884 * 210.00029 * 28 27 26 52 52 H 1.09001 * 109.46631 * 329.99685 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1522 0.0062 5 6 4.2294 -0.0865 0.0005 6 6 5.7097 -0.1511 0.0005 7 8 6.3623 0.8664 0.1248 8 7 6.3324 -1.3384 -0.1373 9 6 5.5501 -2.5506 -0.3923 10 6 7.7915 -1.4169 -0.0321 11 6 8.1849 -1.6691 1.4248 12 7 9.6481 -1.7472 1.5304 13 6 10.0750 -1.7511 2.9360 14 6 11.5827 -2.0149 3.0077 15 7 12.2697 -1.0357 2.1517 16 6 13.3135 -0.2915 2.6331 17 1 13.4642 0.7184 2.2812 18 6 14.1779 -0.8350 3.5735 19 7 14.1719 -2.1313 3.8011 20 14 15.3496 0.2734 4.5158 21 1 14.6909 0.7462 5.7599 22 1 16.5774 -0.4860 4.8637 23 1 15.7119 1.4412 3.6731 24 6 11.8054 -0.8768 0.7653 25 6 10.2888 -0.6577 0.7819 26 7 3.5217 -1.2093 0.0005 27 6 2.2066 -1.1960 0.0005 28 6 1.4501 -2.4994 0.0011 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6846 2.1419 -0.0004 33 1 4.1693 2.0651 0.0110 34 1 5.1821 -2.9509 0.5524 35 1 4.7059 -2.3091 -1.0380 36 1 6.1804 -3.2937 -0.8809 37 1 8.2311 -0.4784 -0.3699 38 1 8.1572 -2.2341 -0.6539 39 1 7.7453 -2.6075 1.7626 40 1 7.8192 -0.8520 2.0466 41 1 9.5425 -2.5342 3.4757 42 1 9.8533 -0.7835 3.3861 43 1 11.9251 -1.9055 4.0367 44 1 11.7948 -3.0249 2.6567 45 1 14.7762 -2.5112 4.4580 46 1 12.2949 -0.0149 0.3117 47 1 12.0392 -1.7761 0.1955 48 1 10.0641 0.2948 1.2620 49 1 9.9115 -0.6479 -0.2407 50 1 1.2678 -2.8132 1.0289 51 1 0.4981 -2.3672 -0.5128 52 1 2.0376 -3.2606 -0.5124 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713743708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:18 Heat of formation + Delta-G solvation = 51.914303 kcal Electronic energy + Delta-G solvation = -30475.894460 eV Core-core repulsion = 26477.017515 eV Total energy + Delta-G solvation = -3998.876945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.19852 -39.52860 -38.05586 -35.93077 -34.60636 -34.03727 -33.41559 -31.40557 -30.27754 -29.22093 -28.69310 -27.78712 -26.80512 -25.72960 -23.77020 -23.22141 -22.65894 -22.22690 -21.21046 -19.78996 -19.00041 -17.74967 -17.04325 -16.75936 -16.17022 -15.77524 -15.66323 -15.19944 -14.83435 -14.76272 -14.36224 -14.29741 -13.99163 -13.74242 -13.49985 -13.40863 -13.36768 -13.32467 -13.20459 -13.09251 -12.82396 -12.69436 -12.60241 -12.31655 -12.11535 -11.85307 -11.77146 -11.27815 -11.09377 -10.81340 -10.64088 -10.44089 -10.39545 -10.23786 -10.15974 -10.03361 -9.71647 -9.55488 -9.51967 -9.22997 -8.67478 -8.44516 -7.74787 -6.50217 -5.72596 -3.20376 0.28825 0.80127 2.48108 2.79112 3.41530 3.46572 3.47913 3.49660 3.66830 4.17568 4.28358 4.37117 4.42844 4.53069 4.59082 4.78482 4.95649 5.07515 5.10521 5.11868 5.15155 5.19293 5.20579 5.24466 5.40559 5.45252 5.51188 5.59252 5.60516 5.63758 5.65067 5.77473 5.87523 5.91809 6.02239 6.05571 6.08860 6.22658 6.25796 6.34496 6.40929 6.49219 6.62698 6.77890 7.02955 7.18714 7.28157 7.39292 7.65484 7.69377 7.77193 7.88297 7.99933 8.54046 9.28288 9.89775 10.52875 11.35918 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025528 B = 0.001920 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.557039 B =14580.719132 C =14933.463035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.117 4.117 3 C -0.082 4.082 4 C -0.112 4.112 5 C 0.080 3.920 6 C 0.566 3.434 7 O -0.530 6.530 8 N -0.595 5.595 9 C 0.091 3.909 10 C 0.109 3.891 11 C 0.043 3.957 12 N -0.528 5.528 13 C 0.037 3.963 14 C 0.183 3.817 15 N -0.594 5.594 16 C -0.255 4.255 17 H 0.062 0.938 18 C 0.006 3.994 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.149 3.851 25 C 0.036 3.964 26 N -0.447 5.447 27 C 0.118 3.882 28 C -0.107 4.107 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.059 0.941 42 H 0.025 0.975 43 H 0.077 0.923 44 H 0.029 0.971 45 H 0.253 0.747 46 H 0.055 0.945 47 H 0.025 0.975 48 H 0.029 0.971 49 H 0.066 0.934 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.333 -0.151 -9.971 32.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.119 4.119 3 C -0.107 4.107 4 C -0.133 4.133 5 C -0.058 4.058 6 C 0.353 3.647 7 O -0.406 6.406 8 N -0.327 5.327 9 C -0.052 4.052 10 C -0.013 4.013 11 C -0.086 4.086 12 N -0.254 5.254 13 C -0.093 4.093 14 C 0.057 3.943 15 N -0.317 5.317 16 C -0.385 4.385 17 H 0.080 0.920 18 C -0.193 4.193 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.023 3.977 25 C -0.093 4.093 26 N -0.159 5.159 27 C -0.022 4.022 28 C -0.164 4.164 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.048 0.952 49 H 0.084 0.916 50 H 0.099 0.901 51 H 0.097 0.903 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -30.196 -0.948 -10.006 31.825 hybrid contribution -0.110 2.026 1.068 2.293 sum -30.306 1.078 -8.938 31.615 Atomic orbital electron populations 1.20876 0.89912 1.03513 1.02999 1.20959 0.97770 0.93612 0.99596 1.21512 0.93575 0.98468 0.97160 1.22111 0.94916 0.99047 0.97233 1.21113 0.94154 0.89666 1.00894 1.17941 0.85847 0.83611 0.77340 1.90813 1.65795 1.34051 1.49942 1.47725 1.07670 1.07913 1.69366 1.22122 0.95639 0.85474 1.01984 1.21826 0.77928 1.03998 0.97512 1.22401 0.90126 1.00415 0.95684 1.62068 1.03948 1.45717 1.13637 1.22890 1.00739 0.98845 0.86776 1.20746 0.84916 0.92098 0.96574 1.44023 1.36042 1.45714 1.05919 1.19144 1.03479 0.94040 1.21811 0.92002 1.25204 0.97214 0.95244 1.01626 1.70015 1.39531 1.09477 1.35452 0.86295 0.80349 0.79963 0.80163 1.21469 1.21709 1.20386 1.21003 0.90082 0.98541 0.88102 1.22764 0.97894 0.91818 0.96828 1.67932 1.07503 1.29600 1.10870 1.21286 0.89508 0.95312 0.96069 1.20801 0.99296 0.92827 1.03438 0.90425 0.91094 0.90484 0.84082 0.83419 0.92266 0.89346 0.91973 0.89095 0.89322 0.91186 0.95308 0.92252 0.95682 0.90424 0.95326 0.93653 0.92647 0.95672 0.95248 0.91612 0.90109 0.90265 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.40 9.62 36.01 0.35 -0.06 16 2 C -0.12 -0.79 5.91 -104.36 -0.62 -1.40 16 3 C -0.08 -0.60 9.85 -39.31 -0.39 -0.99 16 4 C -0.11 -1.13 9.63 -39.05 -0.38 -1.51 16 5 C 0.08 0.95 6.57 -83.01 -0.55 0.40 16 6 C 0.57 8.16 7.65 -12.18 -0.09 8.07 16 7 O -0.53 -9.30 15.90 5.35 0.09 -9.21 16 8 N -0.60 -7.72 2.87 -182.57 -0.52 -8.24 16 9 C 0.09 0.89 9.15 59.85 0.55 1.44 16 10 C 0.11 1.54 4.74 -4.04 -0.02 1.52 16 11 C 0.04 0.69 5.59 -3.82 -0.02 0.67 16 12 N -0.53 -10.08 4.78 -234.32 -1.12 -11.20 16 13 C 0.04 0.77 5.58 -3.70 -0.02 0.75 16 14 C 0.18 4.60 5.36 -3.60 -0.02 4.58 16 15 N -0.59 -15.75 3.00 -172.02 -0.52 -16.27 16 16 C -0.25 -7.29 9.57 -15.06 -0.14 -7.44 16 17 H 0.06 1.75 7.87 -52.49 -0.41 1.34 16 18 C 0.01 0.18 4.96 -17.43 -0.09 0.10 16 19 N -0.90 -26.90 11.48 55.49 0.64 -26.26 16 20 Si 0.90 22.31 29.58 -169.99 -5.03 17.28 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.15 3.37 6.69 -3.60 -0.02 3.35 16 25 C 0.04 0.71 5.04 -3.70 -0.02 0.69 16 26 N -0.45 -4.55 6.07 -6.06 -0.04 -4.58 16 27 C 0.12 0.93 6.78 -82.61 -0.56 0.37 16 28 C -0.11 -0.50 9.77 36.01 0.35 -0.15 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.19 8.09 -51.93 -0.42 -0.23 16 31 H 0.08 0.18 5.95 -51.93 -0.31 -0.13 16 32 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.15 1.48 7.66 -52.48 -0.40 1.08 16 34 H 0.06 0.58 7.98 -51.93 -0.41 0.17 16 35 H 0.09 0.84 5.80 -51.93 -0.30 0.54 16 36 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 37 H 0.09 1.43 5.40 -51.93 -0.28 1.15 16 38 H 0.09 1.12 7.85 -51.93 -0.41 0.72 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.06 1.12 8.11 -51.93 -0.42 0.70 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 2.13 6.56 -51.93 -0.34 1.79 16 44 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.06 1.21 7.95 -51.93 -0.41 0.80 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.07 1.11 5.73 -51.93 -0.30 0.81 16 50 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 51 H 0.08 0.22 5.93 -51.93 -0.31 -0.09 16 52 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 405.75 15.07 6.11 6.11 Total: -1.00 -34.10 405.75 -10.57 -44.67 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -8.49 Total: -2.68 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -1.69 Total: 10.39 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -1.56 Total: -66.55 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.10 -10.57 -44.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713743708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.580 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds