Wall clock time and date at job start Wed Apr 1 2020 04:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35111 * 125.98731 * 2 1 4 4 N 1.36315 * 106.66945 * 179.97438 * 3 2 1 5 5 C 1.35512 * 107.37197 * 0.02562 * 4 3 2 6 6 N 1.30082 * 108.69718 * 359.96509 * 5 4 3 7 7 C 1.51040 * 123.91055 * 179.97438 * 5 4 3 8 8 H 1.09003 * 109.71998 * 103.65853 * 7 5 4 9 9 C 1.53006 * 109.71669 * 224.25308 * 7 5 4 10 10 N 1.46496 * 109.46963 * 294.40171 * 9 7 5 11 11 C 1.34777 * 119.99611 * 179.97438 * 10 9 7 12 12 O 1.21586 * 120.00367 * 354.92833 * 11 10 9 13 13 N 1.34784 * 120.00019 * 174.92380 * 11 10 9 14 14 C 1.46919 * 120.63049 * 184.75902 * 13 11 10 15 15 C 1.53629 * 108.54615 * 126.36882 * 14 13 11 16 16 C 1.53041 * 109.23935 * 54.85111 * 15 14 13 17 17 C 1.50705 * 109.44575 * 178.49957 * 16 15 14 18 18 H 1.07995 * 119.99754 * 120.06564 * 17 16 15 19 19 C 1.37882 * 119.99924 * 300.06049 * 17 16 15 20 20 N 1.31514 * 119.99742 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99738 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47369 * 59.99979 * 21 19 17 23 23 H 1.48500 * 109.46941 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47253 * 299.99912 * 21 19 17 25 25 C 1.53034 * 109.54101 * 298.51281 * 16 15 14 26 26 C 1.46925 * 120.62657 * 5.03259 * 13 11 10 27 27 C 1.53394 * 108.24289 * 343.95596 * 7 5 4 28 28 C 1.53151 * 109.23975 * 48.87840 * 27 7 5 29 29 C 1.46468 * 127.77536 * 180.02562 * 4 3 2 30 30 H 1.08998 * 109.46935 * 270.03029 * 1 2 3 31 31 H 1.09007 * 109.47141 * 30.02546 * 1 2 3 32 32 H 1.08996 * 109.47307 * 150.03078 * 1 2 3 33 33 H 1.07998 * 126.67466 * 359.96030 * 3 2 1 34 34 H 1.09000 * 109.46548 * 54.39971 * 9 7 5 35 35 H 1.08991 * 109.47486 * 174.39484 * 9 7 5 36 36 H 0.96997 * 120.00645 * 359.97438 * 10 9 7 37 37 H 1.09002 * 109.58694 * 246.19778 * 14 13 11 38 38 H 1.09000 * 109.58948 * 6.62509 * 14 13 11 39 39 H 1.08996 * 109.63314 * 294.86217 * 15 14 13 40 40 H 1.08996 * 109.45724 * 174.73489 * 15 14 13 41 41 H 1.09004 * 109.46032 * 58.53554 * 16 15 14 42 42 H 0.97000 * 119.99591 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.49691 * 301.41571 * 25 16 15 44 44 H 1.09002 * 109.49798 * 181.31849 * 25 16 15 45 45 H 1.09000 * 109.59051 * 353.37646 * 26 13 11 46 46 H 1.09002 * 109.58279 * 113.79786 * 26 13 11 47 47 H 1.08997 * 109.51255 * 168.80789 * 27 7 5 48 48 H 1.09002 * 109.50966 * 288.89864 * 27 7 5 49 49 H 1.08999 * 109.46023 * 50.52982 * 28 27 7 50 50 H 1.08990 * 109.46593 * 170.51320 * 28 27 7 51 51 H 1.09005 * 109.58169 * 43.05414 * 29 4 3 52 52 H 1.08996 * 109.58770 * 282.64086 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3009 1.0932 0.0000 4 7 3.5873 0.6423 0.0006 5 6 3.5413 -0.7120 0.0003 6 7 2.2957 -1.0870 0.0004 7 6 4.7655 -1.5968 0.0003 8 1 4.9216 -2.0088 0.9973 9 6 4.5796 -2.7351 -1.0051 10 7 3.4899 -3.6070 -0.5595 11 6 3.1450 -4.6833 -1.2937 12 8 3.6741 -4.8795 -2.3707 13 7 2.2133 -5.5421 -0.8342 14 6 1.9013 -6.7734 -1.5725 15 6 2.0383 -7.9660 -0.6137 16 6 1.1565 -7.7294 0.6146 17 6 1.2588 -8.9134 1.5412 18 1 1.6209 -8.7800 2.5499 19 6 0.8901 -10.1671 1.1012 20 7 0.4497 -10.3296 -0.1272 21 14 1.0163 -11.6346 2.2501 22 1 0.1594 -11.4060 3.4411 23 1 0.5634 -12.8584 1.5414 24 1 2.4270 -11.8061 2.6809 25 6 1.6239 -6.4685 1.3450 26 6 1.4863 -5.2617 0.4114 27 6 5.9748 -0.7432 -0.4021 28 6 5.9845 0.5424 0.4302 29 6 4.8170 1.4380 0.0013 30 1 -0.3633 0.0005 1.0277 31 1 -0.3634 0.8898 -0.5143 32 1 -0.3634 -0.8902 -0.5133 33 1 1.9791 2.1242 -0.0006 34 1 4.3359 -2.3199 -1.9830 35 1 5.5014 -3.3123 -1.0749 36 1 3.0168 -3.4099 0.2640 37 1 0.8813 -6.7226 -1.9534 38 1 2.5983 -6.8883 -2.4026 39 1 3.0776 -8.0673 -0.3014 40 1 1.7200 -8.8772 -1.1200 41 1 0.1207 -7.6035 0.2992 42 1 0.1899 -11.2114 -0.4366 43 1 2.6672 -6.5839 1.6389 44 1 1.0104 -6.3136 2.2325 45 1 1.9093 -4.3788 0.8906 46 1 0.4331 -5.0900 0.1889 47 1 6.8922 -1.3024 -0.2189 48 1 5.9070 -0.4919 -1.4606 49 1 5.8819 0.2921 1.4861 50 1 6.9247 1.0705 0.2718 51 1 4.7157 2.2664 0.7025 52 1 5.0022 1.8254 -1.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542849508.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:09 Heat of formation + Delta-G solvation = 21.758417 kcal Electronic energy + Delta-G solvation = -31373.293235 eV Core-core repulsion = 27373.108633 eV Total energy + Delta-G solvation = -4000.184602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.55862 -39.70473 -37.53978 -36.70203 -35.21021 -33.44964 -32.76645 -31.68158 -30.89259 -30.08923 -29.37508 -27.25421 -26.35574 -25.44230 -23.01319 -22.75932 -22.54529 -21.82733 -20.47889 -19.94294 -19.41974 -18.55515 -17.53693 -17.06729 -16.30678 -16.20630 -15.81454 -15.33819 -14.80157 -14.63822 -14.52862 -14.45303 -14.11372 -14.03496 -13.57844 -13.45583 -13.08483 -12.92359 -12.87481 -12.64619 -12.51238 -12.37680 -12.27853 -11.92984 -11.83314 -11.68311 -11.54650 -11.47386 -11.32804 -10.98470 -10.84989 -10.60555 -10.29954 -10.02517 -9.95476 -9.68151 -9.55746 -9.44663 -9.05091 -8.81801 -8.64615 -8.34633 -8.27620 -7.67313 -5.93458 -4.00090 1.82869 2.49891 2.94477 3.23460 3.35084 3.40024 3.42320 3.81195 3.89336 4.04576 4.12122 4.14510 4.47717 4.50971 4.62281 4.72075 4.82579 4.86479 4.99842 5.06760 5.15969 5.23616 5.26668 5.35767 5.38279 5.59319 5.62686 5.64021 5.66961 5.75708 5.89175 5.95228 5.97475 6.03963 6.13595 6.23859 6.43149 6.56515 6.63590 6.64829 6.77410 6.92526 6.95846 7.01137 7.12702 7.33010 7.40101 7.68917 7.81680 8.00196 8.04564 8.16913 8.50030 8.57744 9.03125 9.20201 9.64261 11.11734 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.002430 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.405821 B =11518.617865 C =11978.169721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.001 3.999 3 C -0.060 4.060 4 N -0.457 5.457 5 C 0.211 3.789 6 N -0.471 5.471 7 C -0.015 4.015 8 H 0.101 0.899 9 C 0.159 3.841 10 N -0.739 5.739 11 C 0.707 3.293 12 O -0.610 6.610 13 N -0.617 5.617 14 C 0.127 3.873 15 C -0.122 4.122 16 C 0.050 3.950 17 C -0.512 4.512 18 H 0.053 0.947 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.890 3.110 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.123 4.123 26 C 0.116 3.884 27 C -0.119 4.119 28 C -0.134 4.134 29 C 0.103 3.897 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.171 0.829 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.403 0.597 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.102 0.898 41 H 0.027 0.973 42 H 0.260 0.740 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.089 0.911 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.089 0.911 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.814 27.455 1.293 28.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.128 4.128 3 C -0.192 4.192 4 N -0.140 5.140 5 C -0.051 4.051 6 N -0.190 5.190 7 C -0.035 4.035 8 H 0.119 0.881 9 C 0.033 3.967 10 N -0.399 5.399 11 C 0.409 3.591 12 O -0.491 6.491 13 N -0.354 5.354 14 C 0.005 3.995 15 C -0.160 4.160 16 C 0.031 3.969 17 C -0.551 4.551 18 H 0.071 0.929 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.718 3.282 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.161 4.161 26 C -0.007 4.007 27 C -0.157 4.157 28 C -0.171 4.171 29 C -0.019 4.019 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.189 0.811 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.242 0.758 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.120 0.880 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.107 0.893 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.110 0.890 51 H 0.107 0.893 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.966 26.461 0.396 27.941 hybrid contribution 0.013 0.332 1.066 1.116 sum 8.979 26.793 1.462 28.295 Atomic orbital electron populations 1.20015 0.87686 1.02643 1.02134 1.20889 0.96481 0.88207 1.07251 1.22320 0.82860 1.00243 1.13779 1.45322 1.06383 1.07341 1.54949 1.23136 0.94721 0.81331 1.05918 1.69934 0.99478 1.30144 1.19405 1.20131 0.88532 0.93169 1.01703 0.88103 1.20894 0.90481 0.89133 0.96219 1.45099 1.38761 1.27560 1.28432 1.15815 0.80113 0.79751 0.83423 1.90832 1.59099 1.77150 1.21998 1.47369 1.39734 1.22634 1.25616 1.21817 0.99630 0.82910 0.95131 1.22088 0.99259 0.97072 0.97624 1.18614 0.94985 0.90786 0.92477 1.21168 1.43186 0.92453 0.98257 0.92871 1.24965 0.95167 0.98775 0.95090 1.69845 1.44141 1.23024 1.15888 0.86693 0.78362 0.82153 0.80965 1.20383 1.21355 1.20409 1.22012 1.00857 0.95784 0.97494 1.21665 0.96029 0.98010 0.84989 1.21670 0.97813 0.95474 1.00785 1.21891 0.97705 0.96264 1.01264 1.21976 0.82503 0.94346 1.03093 0.91468 0.91650 0.90995 0.81146 0.91945 0.91119 0.75846 0.92769 0.90735 0.94450 0.88007 0.95521 0.92959 0.93045 0.92365 0.91979 0.92148 0.89275 0.90564 0.90435 0.88968 0.89312 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.42 36.00 0.38 -0.27 16 2 C 0.00 0.01 7.11 -82.63 -0.59 -0.57 16 3 C -0.06 -0.57 11.56 -16.67 -0.19 -0.76 16 4 N -0.46 -4.14 3.14 -113.66 -0.36 -4.50 16 5 C 0.21 2.40 6.91 -155.17 -1.07 1.33 16 6 N -0.47 -6.49 9.70 -6.81 -0.07 -6.55 16 7 C -0.01 -0.14 2.62 -91.40 -0.24 -0.38 16 8 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 9 C 0.16 2.02 5.05 -4.04 -0.02 2.00 16 10 N -0.74 -11.71 4.88 -65.23 -0.32 -12.03 16 11 C 0.71 14.14 8.30 -86.91 -0.72 13.42 16 12 O -0.61 -14.06 15.78 5.29 0.08 -13.98 16 13 N -0.62 -12.41 2.97 -178.23 -0.53 -12.94 16 14 C 0.13 2.77 6.45 -3.49 -0.02 2.75 16 15 C -0.12 -2.96 5.17 -26.38 -0.14 -3.09 16 16 C 0.05 1.23 2.06 -91.73 -0.19 1.05 16 17 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 20 N -0.89 -25.40 11.30 55.43 0.63 -24.77 16 21 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 26 C 0.12 2.11 6.43 -3.71 -0.02 2.09 16 27 C -0.12 -0.70 5.28 -26.45 -0.14 -0.84 16 28 C -0.13 -0.55 5.94 -26.51 -0.16 -0.71 16 29 C 0.10 0.52 6.98 -3.92 -0.03 0.49 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.40 6.08 4.93 -40.82 -0.20 5.88 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.66 7.03 -51.93 -0.37 1.29 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 2.73 6.03 -51.93 -0.31 2.41 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.06 0.99 5.57 -51.93 -0.29 0.70 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 49 H 0.08 0.35 8.12 -51.93 -0.42 -0.07 16 50 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 51 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 52 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 402.21 15.07 6.06 6.06 Total: -1.00 -34.38 402.21 -11.94 -46.33 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -8.74 Total: 4.90 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -3.68 Total: 1.11 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.64 Total: -60.79 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.08 Total: -13.98 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.38 -11.94 -46.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542849508.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.084 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds