Wall clock time and date at job start Wed Apr 1 2020 04:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35111 * 125.98731 * 2 1 4 4 N 1.36315 * 106.66945 * 179.97438 * 3 2 1 5 5 C 1.35512 * 107.37197 * 0.02562 * 4 3 2 6 6 N 1.30082 * 108.69718 * 359.96509 * 5 4 3 7 7 C 1.51040 * 123.91055 * 179.97438 * 5 4 3 8 8 H 1.09003 * 109.71998 * 103.65853 * 7 5 4 9 9 C 1.53006 * 109.71669 * 224.25308 * 7 5 4 10 10 N 1.46496 * 109.46963 * 294.40171 * 9 7 5 11 11 C 1.34777 * 119.99611 * 179.97438 * 10 9 7 12 12 O 1.21586 * 120.00367 * 354.92833 * 11 10 9 13 13 N 1.34784 * 120.00019 * 174.92380 * 11 10 9 14 14 C 1.46919 * 120.63049 * 184.75902 * 13 11 10 15 15 C 1.53629 * 108.54615 * 126.36882 * 14 13 11 16 16 C 1.53041 * 109.23935 * 54.85111 * 15 14 13 17 17 C 1.50705 * 109.44575 * 178.49957 * 16 15 14 18 18 H 1.07995 * 119.99754 * 120.06564 * 17 16 15 19 19 C 1.37882 * 119.99924 * 300.06049 * 17 16 15 20 20 N 1.31514 * 119.99742 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99738 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47369 * 59.99979 * 21 19 17 23 23 H 1.48500 * 109.46941 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47253 * 299.99912 * 21 19 17 25 25 C 1.53034 * 109.54101 * 298.51281 * 16 15 14 26 26 C 1.46925 * 120.62657 * 5.03259 * 13 11 10 27 27 C 1.53394 * 108.24289 * 343.95596 * 7 5 4 28 28 C 1.53151 * 109.23975 * 48.87840 * 27 7 5 29 29 C 1.46468 * 127.77536 * 180.02562 * 4 3 2 30 30 H 1.08998 * 109.46935 * 270.03029 * 1 2 3 31 31 H 1.09007 * 109.47141 * 30.02546 * 1 2 3 32 32 H 1.08996 * 109.47307 * 150.03078 * 1 2 3 33 33 H 1.07998 * 126.67466 * 359.96030 * 3 2 1 34 34 H 1.09000 * 109.46548 * 54.39971 * 9 7 5 35 35 H 1.08991 * 109.47486 * 174.39484 * 9 7 5 36 36 H 0.96997 * 120.00645 * 359.97438 * 10 9 7 37 37 H 1.09002 * 109.58694 * 246.19778 * 14 13 11 38 38 H 1.09000 * 109.58948 * 6.62509 * 14 13 11 39 39 H 1.08996 * 109.63314 * 294.86217 * 15 14 13 40 40 H 1.08996 * 109.45724 * 174.73489 * 15 14 13 41 41 H 1.09004 * 109.46032 * 58.53554 * 16 15 14 42 42 H 0.97000 * 119.99591 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.49691 * 301.41571 * 25 16 15 44 44 H 1.09002 * 109.49798 * 181.31849 * 25 16 15 45 45 H 1.09000 * 109.59051 * 353.37646 * 26 13 11 46 46 H 1.09002 * 109.58279 * 113.79786 * 26 13 11 47 47 H 1.08997 * 109.51255 * 168.80789 * 27 7 5 48 48 H 1.09002 * 109.50966 * 288.89864 * 27 7 5 49 49 H 1.08999 * 109.46023 * 50.52982 * 28 27 7 50 50 H 1.08990 * 109.46593 * 170.51320 * 28 27 7 51 51 H 1.09005 * 109.58169 * 43.05414 * 29 4 3 52 52 H 1.08996 * 109.58770 * 282.64086 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3009 1.0932 0.0000 4 7 3.5873 0.6423 0.0006 5 6 3.5413 -0.7120 0.0003 6 7 2.2957 -1.0870 0.0004 7 6 4.7655 -1.5968 0.0003 8 1 4.9216 -2.0088 0.9973 9 6 4.5796 -2.7351 -1.0051 10 7 3.4899 -3.6070 -0.5595 11 6 3.1450 -4.6833 -1.2937 12 8 3.6741 -4.8795 -2.3707 13 7 2.2133 -5.5421 -0.8342 14 6 1.9013 -6.7734 -1.5725 15 6 2.0383 -7.9660 -0.6137 16 6 1.1565 -7.7294 0.6146 17 6 1.2588 -8.9134 1.5412 18 1 1.6209 -8.7800 2.5499 19 6 0.8901 -10.1671 1.1012 20 7 0.4497 -10.3296 -0.1272 21 14 1.0163 -11.6346 2.2501 22 1 0.1594 -11.4060 3.4411 23 1 0.5634 -12.8584 1.5414 24 1 2.4270 -11.8061 2.6809 25 6 1.6239 -6.4685 1.3450 26 6 1.4863 -5.2617 0.4114 27 6 5.9748 -0.7432 -0.4021 28 6 5.9845 0.5424 0.4302 29 6 4.8170 1.4380 0.0013 30 1 -0.3633 0.0005 1.0277 31 1 -0.3634 0.8898 -0.5143 32 1 -0.3634 -0.8902 -0.5133 33 1 1.9791 2.1242 -0.0006 34 1 4.3359 -2.3199 -1.9830 35 1 5.5014 -3.3123 -1.0749 36 1 3.0168 -3.4099 0.2640 37 1 0.8813 -6.7226 -1.9534 38 1 2.5983 -6.8883 -2.4026 39 1 3.0776 -8.0673 -0.3014 40 1 1.7200 -8.8772 -1.1200 41 1 0.1207 -7.6035 0.2992 42 1 0.1899 -11.2114 -0.4366 43 1 2.6672 -6.5839 1.6389 44 1 1.0104 -6.3136 2.2325 45 1 1.9093 -4.3788 0.8906 46 1 0.4331 -5.0900 0.1889 47 1 6.8922 -1.3024 -0.2189 48 1 5.9070 -0.4919 -1.4606 49 1 5.8819 0.2921 1.4861 50 1 6.9247 1.0705 0.2718 51 1 4.7157 2.2664 0.7025 52 1 5.0022 1.8254 -1.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542849508.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:08 Heat of formation + Delta-G solvation = 2.162830 kcal Electronic energy + Delta-G solvation = -31374.142963 eV Core-core repulsion = 27373.108633 eV Total energy + Delta-G solvation = -4001.034331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.26630 -41.28500 -38.68521 -37.92626 -36.25240 -35.33535 -33.86743 -32.79122 -32.35995 -31.64796 -30.31863 -28.14593 -27.76424 -26.62642 -24.67254 -23.94544 -23.41166 -23.03548 -21.66312 -21.17692 -20.43360 -19.84304 -19.08004 -18.28168 -17.73697 -17.26784 -16.94379 -16.53112 -16.46636 -15.81999 -15.58289 -15.33103 -15.13102 -14.95272 -14.88253 -14.60793 -14.55787 -14.34838 -14.04570 -13.91886 -13.75530 -13.49296 -13.34260 -13.14117 -13.03465 -12.95239 -12.76926 -12.48822 -12.43493 -12.17189 -12.13245 -12.00950 -11.90030 -11.85399 -11.41912 -11.28995 -10.92551 -10.81110 -10.76435 -10.39337 -10.38874 -10.09783 -9.31870 -9.08325 -8.04774 -6.19202 1.11893 1.43591 1.44693 1.52114 1.77895 1.92823 2.14409 2.21703 2.45896 3.00187 3.21263 3.23433 3.54875 3.66487 3.72718 4.08074 4.11245 4.13897 4.22488 4.27203 4.34751 4.36610 4.40548 4.46237 4.51768 4.59860 4.62656 4.65246 4.68362 4.72132 4.89673 4.91280 4.92420 4.96321 4.99308 5.01073 5.09524 5.19363 5.21701 5.25499 5.27191 5.43792 5.48465 5.52461 5.61778 5.68697 5.92108 6.00017 6.12324 6.14301 6.32776 6.40388 6.91751 7.06910 7.24106 7.48560 7.63425 8.98645 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.002430 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.405821 B =11518.617865 C =11978.169721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.039 4.039 3 C -0.048 4.048 4 N -0.453 5.453 5 C 0.193 3.807 6 N -0.515 5.515 7 C -0.006 4.006 8 H 0.108 0.892 9 C 0.157 3.843 10 N -0.724 5.724 11 C 0.702 3.298 12 O -0.644 6.644 13 N -0.622 5.622 14 C 0.139 3.861 15 C -0.109 4.109 16 C 0.047 3.953 17 C -0.532 4.532 18 H 0.054 0.946 19 C 0.012 3.988 20 N -0.916 5.916 21 Si 0.953 3.047 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.113 4.113 26 C 0.125 3.875 27 C -0.115 4.115 28 C -0.127 4.127 29 C 0.094 3.906 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.203 0.797 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.408 0.592 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.023 0.977 40 H 0.074 0.926 41 H 0.001 0.999 42 H 0.260 0.740 43 H 0.048 0.952 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.065 0.935 47 H 0.106 0.894 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.122 0.878 51 H 0.111 0.889 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.300 30.133 2.871 31.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.168 4.168 3 C -0.182 4.182 4 N -0.135 5.135 5 C -0.070 4.070 6 N -0.235 5.235 7 C -0.027 4.027 8 H 0.126 0.874 9 C 0.032 3.968 10 N -0.382 5.382 11 C 0.403 3.597 12 O -0.528 6.528 13 N -0.358 5.358 14 C 0.016 3.984 15 C -0.147 4.147 16 C 0.029 3.971 17 C -0.570 4.570 18 H 0.072 0.928 19 C -0.187 4.187 20 N -0.556 5.556 21 Si 0.779 3.221 22 H -0.195 1.195 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.151 4.151 26 C 0.002 3.998 27 C -0.154 4.154 28 C -0.164 4.164 29 C -0.027 4.027 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.220 0.780 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.019 0.981 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.084 0.916 47 H 0.124 0.876 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.140 0.860 51 H 0.129 0.871 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.477 29.193 2.012 31.081 hybrid contribution -0.448 -0.438 0.548 0.832 sum 10.029 28.755 2.560 30.562 Atomic orbital electron populations 1.20005 0.87053 1.02548 1.02390 1.21319 0.97433 0.88834 1.09217 1.22799 0.82773 1.01047 1.11532 1.45577 1.07497 1.06911 1.53501 1.23368 0.94542 0.82717 1.06413 1.69835 1.00938 1.31865 1.20841 1.20153 0.89496 0.92195 1.00852 0.87405 1.21080 0.89356 0.89805 0.96588 1.45093 1.38934 1.26393 1.27771 1.16010 0.79778 0.80509 0.83358 1.90801 1.60227 1.78136 1.23607 1.47335 1.40191 1.22149 1.26107 1.21501 0.99477 0.83004 0.94410 1.21848 0.98039 0.97038 0.97823 1.18582 0.93660 0.92269 0.92635 1.21545 1.43161 0.93629 0.98699 0.92823 1.25739 0.94920 1.01505 0.96504 1.69986 1.44741 1.23505 1.17353 0.85698 0.78481 0.78791 0.79180 1.19511 1.21156 1.19948 1.21859 1.00617 0.94681 0.97944 1.21672 0.96433 0.97898 0.83805 1.21708 0.96633 0.96110 1.00931 1.21906 0.98651 0.95233 1.00622 1.22363 0.81072 0.94645 1.04582 0.91021 0.89561 0.93214 0.77999 0.93816 0.90559 0.75258 0.92681 0.91451 0.95770 0.90800 0.98060 0.93050 0.93325 0.91038 0.89196 0.91640 0.87571 0.90916 0.90557 0.86012 0.87096 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.19 10.42 71.24 0.74 -0.44 16 2 C -0.04 -0.91 7.11 41.46 0.29 -0.61 16 3 C -0.05 -0.81 11.56 83.28 0.96 0.16 16 4 N -0.45 -7.13 3.14 -513.51 -1.61 -8.74 16 5 C 0.19 4.13 6.91 138.21 0.96 5.08 16 6 N -0.51 -13.98 9.70 -175.45 -1.70 -15.69 16 7 C -0.01 -0.11 2.62 -11.30 -0.03 -0.14 16 8 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 9 C 0.16 3.92 5.05 86.38 0.44 4.36 16 10 N -0.72 -22.72 4.88 -478.54 -2.33 -25.06 16 11 C 0.70 28.29 8.30 179.05 1.49 29.77 16 12 O -0.64 -30.27 15.78 -3.99 -0.06 -30.33 16 13 N -0.62 -25.23 2.97 -836.05 -2.48 -27.71 16 14 C 0.14 6.25 6.45 86.51 0.56 6.81 16 15 C -0.11 -5.46 5.17 30.82 0.16 -5.30 16 16 C 0.05 2.38 2.06 -11.51 -0.02 2.36 16 17 C -0.53 -29.46 8.56 25.60 0.22 -29.24 16 18 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 19 C 0.01 0.66 5.30 84.66 0.45 1.11 16 20 N -0.92 -53.52 11.30 21.45 0.24 -53.28 16 21 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 25 C -0.11 -4.60 5.30 30.67 0.16 -4.43 16 26 C 0.12 4.45 6.43 86.36 0.56 5.01 16 27 C -0.12 -1.04 5.28 30.78 0.16 -0.88 16 28 C -0.13 -0.57 5.94 30.74 0.18 -0.38 16 29 C 0.09 0.60 6.98 86.48 0.60 1.21 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.41 12.01 4.93 -92.71 -0.46 11.55 16 37 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.07 3.11 7.03 -2.39 -0.02 3.09 16 39 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 4.14 6.03 -2.39 -0.01 4.12 16 41 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 42 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 43 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.09 2.73 5.57 -2.39 -0.01 2.72 16 46 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 49 H 0.08 0.41 8.12 -2.39 -0.02 0.39 16 50 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 51 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 52 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -76.97 402.21 2.41 -74.57 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.45 Total: 25.69 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 7.88 Total: 14.43 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -7.88 Total: -130.47 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.06 Total: -30.33 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -76.97 2.41 -74.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542849508.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.729 kcal (2) G-P(sol) polarization free energy of solvation -76.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds