Wall clock time and date at job start Wed Apr 1 2020 04:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34954 * 126.03493 * 2 1 4 4 C 1.35322 * 107.74134 * 179.83670 * 3 2 1 5 5 C 1.50700 * 126.03656 * 180.16425 * 4 3 2 6 6 H 1.08998 * 112.41521 * 330.30466 * 5 4 3 7 7 N 1.46357 * 113.04726 * 200.82611 * 5 4 3 8 8 C 1.46508 * 134.66630 * 64.54796 * 7 5 4 9 9 N 1.46896 * 109.47078 * 89.99226 * 8 7 5 10 10 C 1.46898 * 110.99860 * 204.99772 * 9 8 7 11 11 C 1.50698 * 109.46872 * 75.62981 * 10 9 8 12 12 H 1.07998 * 120.00288 * 355.52283 * 11 10 9 13 13 C 1.37878 * 119.99952 * 175.52565 * 11 10 9 14 14 N 1.31518 * 119.99975 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00097 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46958 * 89.99884 * 15 13 11 17 17 H 1.48497 * 109.47176 * 209.99812 * 15 13 11 18 18 H 1.48495 * 109.47054 * 329.99795 * 15 13 11 19 19 C 1.46904 * 110.99422 * 81.05039 * 9 8 7 20 20 C 1.53005 * 109.46759 * 195.70931 * 19 9 8 21 21 C 1.53001 * 117.49756 * 244.05049 * 20 19 9 22 22 C 1.53001 * 117.49707 * 175.38932 * 20 19 9 23 23 C 1.34595 * 90.66755 * 244.54330 * 7 5 4 24 24 O 1.21285 * 131.84791 * 180.02562 * 23 7 5 25 25 C 1.50563 * 96.30804 * 0.02562 * 23 7 5 26 26 C 1.53006 * 114.38399 * 246.60343 * 25 23 7 27 27 C 1.53003 * 114.37798 * 113.39500 * 25 23 7 28 28 C 1.39863 * 107.92174 * 0.42053 * 4 3 2 29 29 N 1.30842 * 108.20341 * 359.73810 * 28 4 3 30 30 H 1.08996 * 109.47443 * 269.71895 * 1 2 3 31 31 H 1.09006 * 109.47306 * 29.72267 * 1 2 3 32 32 H 1.09003 * 109.47355 * 149.71327 * 1 2 3 33 33 H 1.07995 * 126.12576 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.46908 * 210.00067 * 8 7 5 35 35 H 1.09005 * 109.46583 * 329.99817 * 8 7 5 36 36 H 1.08998 * 109.47082 * 195.62746 * 10 9 8 37 37 H 1.08998 * 109.47166 * 315.62954 * 10 9 8 38 38 H 0.97001 * 119.99857 * 180.02562 * 14 13 11 39 39 H 1.08994 * 109.47425 * 315.70388 * 19 9 8 40 40 H 1.09000 * 109.47180 * 75.71202 * 19 9 8 41 41 H 1.09002 * 115.55200 * 29.71823 * 20 19 9 42 42 H 1.09000 * 117.49812 * 359.97438 * 21 20 19 43 43 H 1.08995 * 117.50015 * 145.02334 * 21 20 19 44 44 H 1.09004 * 117.49488 * 214.97309 * 22 20 19 45 45 H 1.08991 * 117.50003 * 359.97172 * 22 20 19 46 46 H 1.08994 * 109.47326 * 152.68999 * 26 25 23 47 47 H 1.08997 * 109.46986 * 272.70066 * 26 25 23 48 48 H 1.08998 * 109.46585 * 32.69658 * 26 25 23 49 49 H 1.08992 * 109.47195 * 327.30745 * 27 25 23 50 50 H 1.08998 * 109.46896 * 87.30891 * 27 25 23 51 51 H 1.09007 * 109.47109 * 207.30697 * 27 25 23 52 52 H 1.07999 * 125.89983 * 179.71541 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0037 5 6 4.7680 1.5453 0.0085 6 1 4.5968 2.4993 -0.4902 7 7 5.9690 0.8573 -0.4672 8 6 6.3829 0.2725 -1.7451 9 7 7.0669 1.2922 -2.5515 10 6 6.9730 0.9806 -3.9840 11 6 5.5868 1.3044 -4.4786 12 1 4.8285 1.6331 -3.7835 13 6 5.2866 1.1809 -5.8186 14 7 6.2102 0.7810 -6.6653 15 14 3.5681 1.5815 -6.4316 16 1 3.4973 3.0177 -6.8028 17 1 3.2597 0.7472 -7.6207 18 1 2.5813 1.2982 -5.3588 19 6 8.4681 1.4394 -2.1356 20 6 9.0335 2.7438 -2.7012 21 6 10.1782 2.6384 -3.7109 22 6 10.4542 3.1351 -2.2895 23 6 6.5389 0.9801 0.7460 24 8 7.6187 0.6285 1.1720 25 6 5.3879 1.6997 1.3974 26 6 5.6911 3.1455 1.7959 27 6 4.6841 0.9007 2.4961 28 6 3.5347 -0.7320 -0.0038 29 7 2.2891 -1.1327 -0.0059 30 1 -0.3634 -0.0050 1.0276 31 1 -0.3634 0.8925 -0.5095 32 1 -0.3634 -0.8874 -0.5183 33 1 1.9281 2.1193 -0.0004 34 1 7.0613 -0.5604 -1.5607 35 1 5.5046 -0.0862 -2.2819 36 1 7.7029 1.5749 -4.5337 37 1 7.1760 -0.0789 -4.1395 38 1 5.9991 0.6945 -7.6080 39 1 8.5237 1.4611 -1.0473 40 1 9.0494 0.5979 -2.5125 41 1 8.3109 3.5476 -2.8417 42 1 10.5287 1.6399 -3.9719 43 1 10.2089 3.3731 -4.5154 44 1 10.6663 4.1964 -2.1597 45 1 10.9858 2.4636 -1.6154 46 1 4.7676 3.7243 1.7936 47 1 6.1286 3.1631 2.7941 48 1 6.3933 3.5789 1.0838 49 1 4.7156 -0.1607 2.2504 50 1 5.1888 1.0685 3.4475 51 1 3.6463 1.2251 2.5732 52 1 4.4054 -1.3709 -0.0075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808155364.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:54 Heat of formation + Delta-G solvation = 114.739287 kcal Electronic energy + Delta-G solvation = -32079.585895 eV Core-core repulsion = 28083.433246 eV Total energy + Delta-G solvation = -3996.152649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76654 -40.41709 -37.68109 -36.36276 -35.44770 -33.18903 -32.95698 -32.16364 -30.46023 -27.75607 -27.60894 -27.59164 -26.83216 -24.55075 -23.73174 -22.18639 -21.81822 -21.05181 -20.73576 -20.27741 -19.57379 -17.68238 -16.77849 -16.60508 -16.35554 -16.09599 -15.48171 -15.40169 -15.28003 -14.64268 -14.40619 -14.14102 -13.90210 -13.81494 -13.51768 -13.36031 -13.00911 -12.83667 -12.64677 -12.53128 -12.49636 -12.30710 -12.08567 -12.01705 -11.90101 -11.39670 -11.30969 -11.23747 -11.11145 -10.91471 -10.79497 -10.71870 -10.67327 -10.55332 -10.05203 -9.83368 -9.42350 -9.38050 -9.34636 -9.19773 -8.58805 -8.44527 -8.27187 -7.36055 -6.04573 -4.05821 1.88676 2.51069 2.74420 2.85272 3.28034 3.34396 3.36580 3.41169 3.97704 4.27229 4.39949 4.45690 4.69576 4.81812 4.86009 4.91586 4.98533 5.09289 5.16158 5.24824 5.29850 5.32865 5.38942 5.40713 5.57077 5.59409 5.60794 5.67791 5.74938 5.82302 5.87265 5.90698 5.96482 5.99897 6.06480 6.06703 6.12371 6.23323 6.28980 6.32497 6.37180 6.52768 6.64328 6.77959 6.88247 6.99479 7.11060 7.27025 7.34087 7.71752 7.79221 8.06716 8.13750 8.48514 8.61031 9.01561 9.58159 11.05754 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007311 B = 0.005114 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3828.664408 B = 5473.924506 C = 8510.755718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.378 5.378 3 C 0.069 3.931 4 C -0.232 4.232 5 C 0.214 3.786 6 H 0.100 0.900 7 N -0.599 5.599 8 C 0.308 3.692 9 N -0.546 5.546 10 C 0.198 3.802 11 C -0.504 4.504 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.894 3.106 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.086 3.914 20 C -0.126 4.126 21 C -0.178 4.178 22 C -0.189 4.189 23 C 0.522 3.478 24 O -0.528 6.528 25 C -0.113 4.113 26 C -0.120 4.120 27 C -0.110 4.110 28 C 0.071 3.929 29 N -0.298 5.298 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.174 0.826 34 H 0.046 0.954 35 H 0.104 0.896 36 H 0.044 0.956 37 H -0.011 1.011 38 H 0.261 0.739 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.065 0.935 52 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.148 3.482 16.078 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.160 5.160 3 C -0.077 4.077 4 C -0.245 4.245 5 C 0.109 3.891 6 H 0.118 0.882 7 N -0.333 5.333 8 C 0.099 3.901 9 N -0.272 5.272 10 C 0.073 3.927 11 C -0.543 4.543 12 H 0.079 0.921 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.042 4.042 20 C -0.144 4.144 21 C -0.215 4.215 22 C -0.227 4.227 23 C 0.307 3.693 24 O -0.403 6.403 25 C -0.117 4.117 26 C -0.178 4.178 27 C -0.168 4.168 28 C -0.115 4.115 29 N -0.119 5.119 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.192 0.808 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.062 0.938 37 H 0.006 0.994 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.084 0.916 52 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.657 2.546 15.916 17.845 hybrid contribution -0.004 0.194 -1.022 1.040 sum -7.661 2.740 14.894 16.972 Atomic orbital electron populations 1.21814 0.74411 1.04526 1.03026 1.48417 1.06510 1.03868 1.57205 1.22170 0.90489 0.93398 1.01678 1.19947 0.93812 0.94092 1.16616 1.20273 0.83333 0.94249 0.91283 0.88207 1.50218 1.16501 1.56774 1.09856 1.21702 0.98700 0.89156 0.80557 1.61812 1.11587 1.46654 1.07171 1.19731 0.98351 0.94683 0.79965 1.21126 0.96156 1.44368 0.92606 0.92060 1.24950 0.97075 0.95503 0.96857 1.69953 1.33106 1.47372 1.03154 0.86558 0.84699 0.78230 0.78251 1.20701 1.21392 1.20076 1.21634 0.89535 0.94137 0.98901 1.22203 0.90282 0.99935 1.02024 1.22970 1.03923 1.02282 0.92307 1.22939 1.00235 1.00953 0.98524 1.22010 0.86587 0.78044 0.82630 1.90651 1.23357 1.53196 1.73125 1.22359 0.95548 0.97942 0.95847 1.21450 1.02219 0.92001 1.02085 1.21389 0.99788 0.99458 0.96178 1.23611 0.94869 0.94416 0.98624 1.77375 1.01605 1.08095 1.24807 0.90950 0.89546 0.89422 0.80844 0.93575 0.87767 0.93785 0.99359 0.92953 0.91484 0.95725 0.87222 0.89277 0.89195 0.89396 0.89469 0.91260 0.91575 0.91698 0.92217 0.92036 0.91602 0.80658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 11.47 59.85 0.69 1.44 16 2 N -0.38 -4.44 4.01 -68.16 -0.27 -4.71 16 3 C 0.07 0.77 11.40 -17.22 -0.20 0.57 16 4 C -0.23 -3.02 3.93 -105.05 -0.41 -3.43 16 5 C 0.21 2.89 4.41 -81.50 -0.36 2.53 16 6 H 0.10 1.35 7.99 -51.93 -0.42 0.93 16 7 N -0.60 -9.83 2.99 -197.28 -0.59 -10.42 16 8 C 0.31 5.87 6.42 -63.31 -0.41 5.47 16 9 N -0.55 -11.44 4.48 -239.98 -1.08 -12.52 16 10 C 0.20 4.93 4.54 -4.98 -0.02 4.91 16 11 C -0.50 -13.54 8.51 -34.44 -0.29 -13.83 16 12 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 15 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 C 0.09 1.67 5.09 -3.82 -0.02 1.65 16 20 C -0.13 -2.27 4.97 -90.62 -0.45 -2.72 16 21 C -0.18 -2.97 9.98 -26.69 -0.27 -3.24 16 22 C -0.19 -2.85 10.26 -26.69 -0.27 -3.12 16 23 C 0.52 8.55 7.58 -23.41 -0.18 8.37 16 24 O -0.53 -10.41 17.41 5.55 0.10 -10.31 16 25 C -0.11 -1.37 1.57 -155.78 -0.24 -1.62 16 26 C -0.12 -1.22 9.24 37.16 0.34 -0.87 16 27 C -0.11 -1.17 8.10 37.16 0.30 -0.87 16 28 C 0.07 1.02 10.52 -17.37 -0.18 0.84 16 29 N -0.30 -4.35 12.58 30.62 0.39 -3.96 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.05 0.88 7.92 -51.93 -0.41 0.47 16 35 H 0.10 2.13 7.24 -51.93 -0.38 1.75 16 36 H 0.04 1.19 6.94 -51.93 -0.36 0.83 16 37 H -0.01 -0.31 8.00 -51.93 -0.42 -0.72 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.07 1.32 6.64 -51.93 -0.35 0.98 16 40 H 0.02 0.49 7.79 -51.93 -0.40 0.09 16 41 H 0.11 2.11 8.14 -51.93 -0.42 1.68 16 42 H 0.09 1.51 8.03 -51.93 -0.42 1.09 16 43 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 44 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 48 H 0.06 0.75 8.03 -51.93 -0.42 0.33 16 49 H 0.06 0.71 6.94 -51.93 -0.36 0.35 16 50 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 51 H 0.07 0.61 7.82 -51.93 -0.41 0.21 16 52 H 0.18 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 426.04 15.07 6.42 6.42 Total: -1.00 -32.98 426.04 -10.34 -43.32 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.95 Total: 3.68 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -2.07 Total: -2.44 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.82 Total: -56.91 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.10 Total: -10.31 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -32.98 -10.34 -43.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808155364.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.061 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds