Wall clock time and date at job start Wed Apr 1 2020 04:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34954 * 126.03493 * 2 1 4 4 C 1.35322 * 107.74134 * 179.83670 * 3 2 1 5 5 C 1.50700 * 126.03656 * 180.16425 * 4 3 2 6 6 H 1.08998 * 112.41521 * 330.30466 * 5 4 3 7 7 N 1.46357 * 113.04726 * 200.82611 * 5 4 3 8 8 C 1.46508 * 134.66630 * 64.54796 * 7 5 4 9 9 N 1.46896 * 109.47078 * 89.99226 * 8 7 5 10 10 C 1.46898 * 110.99860 * 204.99772 * 9 8 7 11 11 C 1.50698 * 109.46872 * 75.62981 * 10 9 8 12 12 H 1.07998 * 120.00288 * 355.52283 * 11 10 9 13 13 C 1.37878 * 119.99952 * 175.52565 * 11 10 9 14 14 N 1.31518 * 119.99975 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00097 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46958 * 89.99884 * 15 13 11 17 17 H 1.48497 * 109.47176 * 209.99812 * 15 13 11 18 18 H 1.48495 * 109.47054 * 329.99795 * 15 13 11 19 19 C 1.46904 * 110.99422 * 81.05039 * 9 8 7 20 20 C 1.53005 * 109.46759 * 195.70931 * 19 9 8 21 21 C 1.53001 * 117.49756 * 244.05049 * 20 19 9 22 22 C 1.53001 * 117.49707 * 175.38932 * 20 19 9 23 23 C 1.34595 * 90.66755 * 244.54330 * 7 5 4 24 24 O 1.21285 * 131.84791 * 180.02562 * 23 7 5 25 25 C 1.50563 * 96.30804 * 0.02562 * 23 7 5 26 26 C 1.53006 * 114.38399 * 246.60343 * 25 23 7 27 27 C 1.53003 * 114.37798 * 113.39500 * 25 23 7 28 28 C 1.39863 * 107.92174 * 0.42053 * 4 3 2 29 29 N 1.30842 * 108.20341 * 359.73810 * 28 4 3 30 30 H 1.08996 * 109.47443 * 269.71895 * 1 2 3 31 31 H 1.09006 * 109.47306 * 29.72267 * 1 2 3 32 32 H 1.09003 * 109.47355 * 149.71327 * 1 2 3 33 33 H 1.07995 * 126.12576 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.46908 * 210.00067 * 8 7 5 35 35 H 1.09005 * 109.46583 * 329.99817 * 8 7 5 36 36 H 1.08998 * 109.47082 * 195.62746 * 10 9 8 37 37 H 1.08998 * 109.47166 * 315.62954 * 10 9 8 38 38 H 0.97001 * 119.99857 * 180.02562 * 14 13 11 39 39 H 1.08994 * 109.47425 * 315.70388 * 19 9 8 40 40 H 1.09000 * 109.47180 * 75.71202 * 19 9 8 41 41 H 1.09002 * 115.55200 * 29.71823 * 20 19 9 42 42 H 1.09000 * 117.49812 * 359.97438 * 21 20 19 43 43 H 1.08995 * 117.50015 * 145.02334 * 21 20 19 44 44 H 1.09004 * 117.49488 * 214.97309 * 22 20 19 45 45 H 1.08991 * 117.50003 * 359.97172 * 22 20 19 46 46 H 1.08994 * 109.47326 * 152.68999 * 26 25 23 47 47 H 1.08997 * 109.46986 * 272.70066 * 26 25 23 48 48 H 1.08998 * 109.46585 * 32.69658 * 26 25 23 49 49 H 1.08992 * 109.47195 * 327.30745 * 27 25 23 50 50 H 1.08998 * 109.46896 * 87.30891 * 27 25 23 51 51 H 1.09007 * 109.47109 * 207.30697 * 27 25 23 52 52 H 1.07999 * 125.89983 * 179.71541 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0037 5 6 4.7680 1.5453 0.0085 6 1 4.5968 2.4993 -0.4902 7 7 5.9690 0.8573 -0.4672 8 6 6.3829 0.2725 -1.7451 9 7 7.0669 1.2922 -2.5515 10 6 6.9730 0.9806 -3.9840 11 6 5.5868 1.3044 -4.4786 12 1 4.8285 1.6331 -3.7835 13 6 5.2866 1.1809 -5.8186 14 7 6.2102 0.7810 -6.6653 15 14 3.5681 1.5815 -6.4316 16 1 3.4973 3.0177 -6.8028 17 1 3.2597 0.7472 -7.6207 18 1 2.5813 1.2982 -5.3588 19 6 8.4681 1.4394 -2.1356 20 6 9.0335 2.7438 -2.7012 21 6 10.1782 2.6384 -3.7109 22 6 10.4542 3.1351 -2.2895 23 6 6.5389 0.9801 0.7460 24 8 7.6187 0.6285 1.1720 25 6 5.3879 1.6997 1.3974 26 6 5.6911 3.1455 1.7959 27 6 4.6841 0.9007 2.4961 28 6 3.5347 -0.7320 -0.0038 29 7 2.2891 -1.1327 -0.0059 30 1 -0.3634 -0.0050 1.0276 31 1 -0.3634 0.8925 -0.5095 32 1 -0.3634 -0.8874 -0.5183 33 1 1.9281 2.1193 -0.0004 34 1 7.0613 -0.5604 -1.5607 35 1 5.5046 -0.0862 -2.2819 36 1 7.7029 1.5749 -4.5337 37 1 7.1760 -0.0789 -4.1395 38 1 5.9991 0.6945 -7.6080 39 1 8.5237 1.4611 -1.0473 40 1 9.0494 0.5979 -2.5125 41 1 8.3109 3.5476 -2.8417 42 1 10.5287 1.6399 -3.9719 43 1 10.2089 3.3731 -4.5154 44 1 10.6663 4.1964 -2.1597 45 1 10.9858 2.4636 -1.6154 46 1 4.7676 3.7243 1.7936 47 1 6.1286 3.1631 2.7941 48 1 6.3933 3.5789 1.0838 49 1 4.7156 -0.1607 2.2504 50 1 5.1888 1.0685 3.4475 51 1 3.6463 1.2251 2.5732 52 1 4.4054 -1.3709 -0.0075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808155364.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:53 Heat of formation + Delta-G solvation = 94.907995 kcal Electronic energy + Delta-G solvation = -32080.445844 eV Core-core repulsion = 28083.433246 eV Total energy + Delta-G solvation = -3997.012598 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.84472 -41.49553 -39.23910 -37.72362 -36.98593 -34.76836 -34.01712 -33.62542 -31.44406 -29.63617 -28.99770 -28.44487 -27.70704 -26.16162 -25.01185 -23.71756 -23.19383 -22.19987 -21.96559 -21.32162 -21.12260 -18.79082 -18.55054 -17.90444 -17.77084 -17.41851 -16.78598 -16.69403 -16.37636 -16.24242 -15.67473 -15.38793 -15.25560 -15.19384 -14.67891 -14.44554 -14.34782 -14.17026 -13.78445 -13.65031 -13.48774 -13.37438 -13.30677 -13.26962 -13.17085 -12.86024 -12.79267 -12.67972 -12.55065 -12.39190 -12.23884 -12.14876 -12.00776 -11.88672 -11.55845 -11.43781 -11.16189 -10.77316 -10.64654 -10.56818 -10.31142 -9.95509 -9.25307 -9.14671 -8.17335 -6.26345 0.98602 1.40019 1.41224 1.51008 1.53453 1.66365 1.75541 2.12504 2.40537 2.85040 2.89581 3.14572 3.26590 3.60599 3.68918 3.89572 3.98335 4.02247 4.04711 4.10393 4.16066 4.19906 4.34247 4.38923 4.43443 4.46608 4.51633 4.60667 4.71821 4.74304 4.75667 4.76067 4.85832 4.91564 4.92747 4.97078 4.99495 5.06952 5.09165 5.14127 5.20370 5.24035 5.27302 5.37420 5.44495 5.58890 5.62288 5.73726 5.84759 6.07437 6.20261 6.27955 6.53584 6.74953 6.87193 7.26122 7.42498 8.93217 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007311 B = 0.005114 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3828.664408 B = 5473.924506 C = 8510.755718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.376 5.376 3 C 0.086 3.914 4 C -0.251 4.251 5 C 0.217 3.783 6 H 0.106 0.894 7 N -0.606 5.606 8 C 0.317 3.683 9 N -0.543 5.543 10 C 0.217 3.783 11 C -0.511 4.511 12 H 0.062 0.938 13 C 0.005 3.995 14 N -0.933 5.933 15 Si 0.963 3.037 16 H -0.272 1.272 17 H -0.287 1.287 18 H -0.266 1.266 19 C 0.096 3.904 20 C -0.149 4.149 21 C -0.184 4.184 22 C -0.155 4.155 23 C 0.509 3.491 24 O -0.569 6.569 25 C -0.087 4.087 26 C -0.118 4.118 27 C -0.105 4.105 28 C 0.056 3.944 29 N -0.333 5.333 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.217 0.783 34 H 0.036 0.964 35 H 0.087 0.913 36 H 0.021 0.979 37 H -0.042 1.042 38 H 0.262 0.738 39 H 0.064 0.936 40 H 0.012 0.988 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.113 0.887 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.077 0.923 48 H 0.048 0.952 49 H 0.040 0.960 50 H 0.073 0.927 51 H 0.088 0.912 52 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.651 6.087 17.638 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.158 5.158 3 C -0.062 4.062 4 C -0.264 4.264 5 C 0.113 3.887 6 H 0.124 0.876 7 N -0.340 5.340 8 C 0.107 3.893 9 N -0.269 5.269 10 C 0.091 3.909 11 C -0.549 4.549 12 H 0.080 0.920 13 C -0.193 4.193 14 N -0.573 5.573 15 Si 0.789 3.211 16 H -0.197 1.197 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.032 4.032 20 C -0.168 4.168 21 C -0.221 4.221 22 C -0.193 4.193 23 C 0.297 3.703 24 O -0.447 6.447 25 C -0.091 4.091 26 C -0.176 4.176 27 C -0.162 4.162 28 C -0.129 4.129 29 N -0.155 5.155 30 H 0.112 0.888 31 H 0.133 0.867 32 H 0.101 0.899 33 H 0.233 0.767 34 H 0.054 0.946 35 H 0.105 0.895 36 H 0.039 0.961 37 H -0.024 1.024 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.030 0.970 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.114 0.886 44 H 0.132 0.868 45 H 0.113 0.887 46 H 0.121 0.879 47 H 0.096 0.904 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.092 0.908 51 H 0.106 0.894 52 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.197 5.154 17.511 20.909 hybrid contribution 0.752 -0.664 -1.476 1.785 sum -9.444 4.490 16.035 19.143 Atomic orbital electron populations 1.22203 0.71868 1.05705 1.04853 1.48797 1.07939 1.03252 1.55773 1.22757 0.89482 0.94859 0.99094 1.19920 0.94570 0.93304 1.18604 1.20431 0.82502 0.94082 0.91722 0.87641 1.50278 1.18118 1.56759 1.08819 1.21363 0.97523 0.88833 0.81589 1.61817 1.12831 1.46961 1.05309 1.19332 0.97205 0.92186 0.82206 1.21354 0.96684 1.43992 0.92885 0.91978 1.25812 1.01147 0.95266 0.97050 1.70087 1.35311 1.48474 1.03468 0.85469 0.79782 0.78222 0.77654 1.19724 1.21339 1.19042 1.21549 0.88459 0.94714 0.98523 1.22105 0.91532 0.98855 1.04301 1.22993 1.03328 1.02287 0.93523 1.23018 0.96886 1.02545 0.96822 1.22999 0.86986 0.77584 0.82739 1.90614 1.25387 1.54859 1.73869 1.22387 0.92205 0.98879 0.95609 1.21524 1.03631 0.90305 1.02102 1.21386 1.00965 0.98062 0.95807 1.23514 0.94696 0.95225 0.99470 1.77305 1.01995 1.10029 1.26168 0.88772 0.86737 0.89931 0.76670 0.94592 0.89506 0.96058 1.02426 0.92875 0.91793 0.96987 0.88392 0.90088 0.88639 0.86845 0.88651 0.87887 0.90430 0.93320 0.94091 0.90815 0.89361 0.82167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 11.47 127.77 1.47 2.52 16 2 N -0.38 -7.90 4.01 -369.56 -1.48 -9.38 16 3 C 0.09 1.63 11.40 83.54 0.95 2.58 16 4 C -0.25 -6.21 3.93 -20.14 -0.08 -6.29 16 5 C 0.22 5.61 4.41 36.28 0.16 5.77 16 6 H 0.11 2.62 7.99 -2.39 -0.02 2.60 16 7 N -0.61 -20.48 2.99 -896.56 -2.68 -23.16 16 8 C 0.32 12.85 6.42 170.80 1.10 13.95 16 9 N -0.54 -23.87 4.48 -913.16 -4.09 -27.97 16 10 C 0.22 11.40 4.54 85.56 0.39 11.79 16 11 C -0.51 -28.06 8.51 25.60 0.22 -27.85 16 12 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 13 C 0.01 0.30 5.46 84.65 0.46 0.76 16 14 N -0.93 -55.46 13.29 21.45 0.28 -55.18 16 15 Si 0.96 43.50 29.54 68.60 2.03 45.52 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 C 0.10 3.88 5.09 86.30 0.44 4.32 16 20 C -0.15 -5.47 4.97 -10.79 -0.05 -5.52 16 21 C -0.18 -6.22 9.98 30.62 0.31 -5.92 16 22 C -0.16 -4.49 10.26 30.62 0.31 -4.18 16 23 C 0.51 16.96 7.58 79.69 0.60 17.56 16 24 O -0.57 -23.16 17.41 -3.04 -0.05 -23.21 16 25 C -0.09 -1.97 1.57 -53.01 -0.08 -2.06 16 26 C -0.12 -2.05 9.24 71.98 0.67 -1.39 16 27 C -0.10 -1.99 8.10 71.98 0.58 -1.41 16 28 C 0.06 1.64 10.52 85.23 0.90 2.54 16 29 N -0.33 -9.61 12.58 -57.03 -0.72 -10.32 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.22 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.04 1.50 7.92 -2.39 -0.02 1.49 16 35 H 0.09 3.79 7.24 -2.38 -0.02 3.78 16 36 H 0.02 1.21 6.94 -2.39 -0.02 1.19 16 37 H -0.04 -2.42 8.00 -2.39 -0.02 -2.44 16 38 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 39 H 0.06 2.62 6.64 -2.39 -0.02 2.61 16 40 H 0.01 0.51 7.79 -2.39 -0.02 0.49 16 41 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 42 H 0.08 2.84 8.03 -2.39 -0.02 2.82 16 43 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 45 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 48 H 0.05 1.02 8.03 -2.39 -0.02 1.00 16 49 H 0.04 0.95 6.94 -2.39 -0.02 0.93 16 50 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 51 H 0.09 1.32 7.82 -2.38 -0.02 1.30 16 52 H 0.16 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -74.99 426.04 2.51 -72.48 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.89 Total: 24.04 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 8.34 Total: 7.17 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -8.69 Total: -126.01 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.05 Total: -23.21 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -74.99 2.51 -72.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808155364.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.392 kcal (2) G-P(sol) polarization free energy of solvation -74.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds