Wall clock time and date at job start Wed Apr 1 2020 04:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34954 * 126.03700 * 2 1 4 4 C 1.35311 * 107.74601 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.04042 * 180.02562 * 4 3 2 6 6 H 1.08999 * 112.41902 * 329.98182 * 5 4 3 7 7 N 1.46358 * 113.05280 * 200.49661 * 5 4 3 8 8 C 1.46499 * 134.66491 * 64.54470 * 7 5 4 9 9 N 1.46497 * 109.47272 * 89.99876 * 8 7 5 10 10 C 1.36934 * 120.00239 * 270.00344 * 9 8 7 11 11 H 1.08004 * 120.00242 * 141.60190 * 10 9 8 12 12 C 1.38810 * 120.00277 * 321.59568 * 10 9 8 13 13 N 1.31627 * 119.99859 * 339.13674 * 12 10 9 14 14 Si 1.86792 * 120.00428 * 159.13486 * 12 10 9 15 15 H 1.48506 * 109.47170 * 60.00271 * 14 12 10 16 16 H 1.48502 * 109.47585 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47259 * 300.00360 * 14 12 10 18 18 C 1.46506 * 119.99745 * 90.00189 * 9 8 7 19 19 C 1.54264 * 110.02899 * 242.18685 * 18 9 8 20 20 C 1.54972 * 104.15922 * 217.13491 * 19 18 9 21 21 C 1.54885 * 102.77408 * 37.88935 * 20 19 18 22 22 C 1.53876 * 110.03268 * 124.97058 * 18 9 8 23 23 C 1.34598 * 90.67076 * 244.54810 * 7 5 4 24 24 O 1.21280 * 131.85237 * 180.02562 * 23 7 5 25 25 C 1.50566 * 96.30380 * 359.97438 * 23 7 5 26 26 C 1.52999 * 114.37907 * 246.60604 * 25 23 7 27 27 C 1.53007 * 114.37922 * 113.40060 * 25 23 7 28 28 C 1.39868 * 107.92194 * 0.26545 * 4 3 2 29 29 N 1.30843 * 108.19894 * 359.55316 * 28 4 3 30 30 H 1.09006 * 109.47033 * 89.99444 * 1 2 3 31 31 H 1.08996 * 109.47709 * 209.99954 * 1 2 3 32 32 H 1.09000 * 109.47274 * 330.00372 * 1 2 3 33 33 H 1.08007 * 126.12725 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.47419 * 210.00541 * 8 7 5 35 35 H 1.09005 * 109.47128 * 330.00494 * 8 7 5 36 36 H 0.96992 * 120.00025 * 175.01436 * 13 12 10 37 37 H 1.08992 * 110.01596 * 3.57381 * 18 9 8 38 38 H 1.09002 * 110.49191 * 335.78315 * 19 18 9 39 39 H 1.09002 * 110.48873 * 98.42978 * 19 18 9 40 40 H 1.09001 * 110.71589 * 279.57433 * 20 19 18 41 41 H 1.09000 * 110.76266 * 156.22331 * 20 19 18 42 42 H 1.09002 * 110.48616 * 203.40645 * 21 20 19 43 43 H 1.09005 * 110.48633 * 80.76493 * 21 20 19 44 44 H 1.08995 * 110.02963 * 238.57026 * 22 18 9 45 45 H 1.09003 * 110.03173 * 359.97438 * 22 18 9 46 46 H 1.08998 * 109.47229 * 152.69873 * 26 25 23 47 47 H 1.09005 * 109.47071 * 272.69961 * 26 25 23 48 48 H 1.08994 * 109.47559 * 32.69517 * 26 25 23 49 49 H 1.09000 * 109.46677 * 327.30305 * 27 25 23 50 50 H 1.08998 * 109.47406 * 87.29705 * 27 25 23 51 51 H 1.08996 * 109.47152 * 207.30649 * 27 25 23 52 52 H 1.08003 * 125.90448 * 179.73086 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5454 0.0013 6 1 4.5972 2.4966 -0.5027 7 7 5.9694 0.8548 -0.4697 8 6 6.3841 0.2630 -1.7441 9 7 7.0668 1.2753 -2.5535 10 6 6.3491 2.0617 -3.4146 11 1 6.6037 3.1046 -3.5332 12 6 5.2944 1.5185 -4.1353 13 7 5.2268 0.2175 -4.3235 14 14 3.9709 2.6337 -4.8380 15 1 4.5881 3.6017 -5.7800 16 1 2.9641 1.8140 -5.5589 17 1 3.3079 3.3722 -3.7333 18 6 8.5175 1.4464 -2.4415 19 6 8.8444 2.8646 -1.9301 20 6 10.1252 3.2619 -2.7069 21 6 9.8741 2.6602 -4.1118 22 6 9.1722 1.3162 -3.8280 23 6 6.5385 0.9842 0.7431 24 8 7.6179 0.6350 1.1719 25 6 5.3875 1.7085 1.3894 26 6 5.6916 3.1563 1.7796 27 6 4.6822 0.9165 2.4923 28 6 3.5347 -0.7320 -0.0052 29 7 2.2891 -1.1327 0.0006 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.9281 2.1194 0.0004 34 1 7.0624 -0.5689 -1.5547 35 1 5.5062 -0.0987 -2.2795 36 1 4.4540 -0.1693 -4.7638 37 1 8.9299 0.7004 -1.7623 38 1 8.0298 3.5509 -2.1616 39 1 9.0376 2.8483 -0.8575 40 1 11.0081 2.8167 -2.2481 41 1 10.2226 4.3461 -2.7627 42 1 10.8185 2.4953 -4.6305 43 1 9.2259 3.3133 -4.6962 44 1 9.9028 0.5074 -3.8214 45 1 8.4106 1.1252 -4.5841 46 1 4.7685 3.7359 1.7733 47 1 6.1283 3.1794 2.7781 48 1 6.3947 3.5851 1.0656 49 1 4.7131 -0.1464 2.2528 50 1 5.1864 1.0894 3.4431 51 1 3.6447 1.2421 2.5667 52 1 4.4054 -1.3710 -0.0104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808162737.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:02 Heat of formation + Delta-G solvation = 93.608016 kcal Electronic energy + Delta-G solvation = -33083.733421 eV Core-core repulsion = 29086.664451 eV Total energy + Delta-G solvation = -3997.068970 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.43806 -40.06030 -37.66230 -35.92899 -34.46669 -32.99619 -32.35694 -30.90369 -30.19168 -27.80059 -27.45433 -27.34656 -26.69228 -26.15515 -23.82807 -22.98425 -20.96033 -20.81811 -20.02045 -19.92009 -19.04408 -17.38777 -16.84226 -16.29332 -15.89870 -15.58321 -15.34683 -15.20817 -14.84070 -14.73527 -14.25648 -14.14883 -13.61855 -13.32385 -13.19585 -13.10994 -12.83703 -12.66281 -12.51409 -12.38514 -12.30574 -12.13660 -11.85345 -11.67453 -11.45575 -11.21926 -11.02054 -10.99316 -10.81759 -10.61691 -10.47129 -10.37120 -10.34449 -10.27997 -10.19331 -10.00181 -9.75040 -9.53161 -9.16384 -8.99033 -8.55850 -8.16504 -7.92304 -6.76813 -5.92723 -3.51980 2.09214 2.70055 3.01831 3.25213 3.29725 3.34917 3.35882 3.97706 4.34902 4.40792 4.62969 4.99292 5.03871 5.10964 5.16614 5.22754 5.33462 5.34514 5.39087 5.41205 5.47571 5.53843 5.69791 5.75977 5.79850 5.87650 5.95942 6.03082 6.08762 6.16313 6.20887 6.26644 6.28451 6.31810 6.33324 6.36625 6.45897 6.58365 6.60956 6.64217 6.66967 6.88079 6.89884 7.03933 7.06493 7.17073 7.18556 7.38168 7.63495 7.72345 7.78052 7.93489 8.41913 9.06299 9.09893 9.67671 10.26939 11.08068 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010037 B = 0.005173 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.957006 B = 5411.500611 C = 7116.581834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.382 5.382 3 C 0.060 3.940 4 C -0.219 4.219 5 C 0.208 3.792 6 H 0.092 0.908 7 N -0.602 5.602 8 C 0.366 3.634 9 N -0.564 5.564 10 C -0.253 4.253 11 H 0.061 0.939 12 C 0.021 3.979 13 N -0.883 5.883 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.292 1.292 17 H -0.282 1.282 18 C 0.167 3.833 19 C -0.131 4.131 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.129 4.129 23 C 0.515 3.485 24 O -0.542 6.542 25 C -0.122 4.122 26 C -0.117 4.117 27 C -0.108 4.108 28 C 0.076 3.924 29 N -0.301 5.301 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.171 0.829 34 H 0.051 0.949 35 H 0.121 0.879 36 H 0.256 0.744 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.058 0.942 50 H 0.057 0.943 51 H 0.061 0.939 52 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.069 3.815 9.325 11.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.164 5.164 3 C -0.086 4.086 4 C -0.232 4.232 5 C 0.101 3.899 6 H 0.110 0.890 7 N -0.339 5.339 8 C 0.161 3.839 9 N -0.283 5.283 10 C -0.382 4.382 11 H 0.079 0.921 12 C -0.179 4.179 13 N -0.525 5.525 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.218 1.218 17 H -0.209 1.209 18 C 0.060 3.940 19 C -0.170 4.170 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.168 4.168 23 C 0.299 3.701 24 O -0.419 6.419 25 C -0.126 4.126 26 C -0.175 4.175 27 C -0.166 4.166 28 C -0.111 4.111 29 N -0.122 5.122 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.188 0.812 34 H 0.069 0.931 35 H 0.138 0.862 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.080 0.920 52 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.440 2.353 9.060 11.362 hybrid contribution -0.355 1.347 -0.660 1.542 sum -6.795 3.700 8.400 11.420 Atomic orbital electron populations 1.21757 0.74773 1.03953 1.03119 1.48361 1.06284 1.03928 1.57833 1.22132 0.90684 0.93193 1.02597 1.20020 0.93872 0.94142 1.15160 1.20212 0.84187 0.94255 0.91220 0.88996 1.52115 1.15186 1.55350 1.11271 1.21280 0.98363 0.87312 0.76977 1.44532 1.00614 1.41556 1.41624 1.18844 1.11910 0.91235 1.16248 0.92138 1.25117 1.01160 0.95409 0.96264 1.69986 1.28881 1.10239 1.43353 0.86556 0.82097 0.80376 0.78897 1.20683 1.21782 1.20860 1.21137 0.84961 0.94067 0.93850 1.22778 0.96640 0.99631 0.97953 1.22445 0.98046 0.99024 0.96555 1.22247 0.98868 0.97978 0.96323 1.22494 0.99001 0.95093 1.00200 1.21937 0.86344 0.78348 0.83437 1.90599 1.23570 1.54319 1.73387 1.22483 0.96505 0.97641 0.95989 1.21411 1.01805 0.92571 1.01742 1.21357 0.99508 0.99555 0.96195 1.23606 0.94704 0.94529 0.98224 1.77335 1.01680 1.08008 1.25218 0.91083 0.89630 0.89818 0.81221 0.93081 0.86215 0.93371 0.93191 0.91106 0.93445 0.92649 0.92961 0.93405 0.92039 0.94013 0.89530 0.91733 0.91942 0.91962 0.92341 0.92403 0.92010 0.80659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.94 11.47 59.85 0.69 1.62 16 2 N -0.38 -5.24 4.01 -68.16 -0.27 -5.52 16 3 C 0.06 0.82 11.40 -17.22 -0.20 0.62 16 4 C -0.22 -3.48 3.92 -105.06 -0.41 -3.89 16 5 C 0.21 3.48 4.41 -81.48 -0.36 3.13 16 6 H 0.09 1.60 7.99 -51.93 -0.42 1.19 16 7 N -0.60 -11.83 3.08 -197.46 -0.61 -12.44 16 8 C 0.37 8.20 7.01 -63.76 -0.45 7.76 16 9 N -0.56 -13.01 2.62 -168.07 -0.44 -13.45 16 10 C -0.25 -6.23 7.77 -15.06 -0.12 -6.35 16 11 H 0.06 1.54 6.92 -52.48 -0.36 1.17 16 12 C 0.02 0.54 4.96 -17.43 -0.09 0.45 16 13 N -0.88 -23.44 11.49 55.49 0.64 -22.80 16 14 Si 0.89 20.29 29.61 -169.99 -5.03 15.26 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 C 0.17 3.55 3.42 -66.81 -0.23 3.32 16 19 C -0.13 -2.54 6.43 -25.03 -0.16 -2.70 16 20 C -0.12 -2.05 6.91 -24.70 -0.17 -2.22 16 21 C -0.12 -2.04 6.83 -25.08 -0.17 -2.21 16 22 C -0.13 -2.60 6.25 -25.61 -0.16 -2.76 16 23 C 0.51 10.03 8.20 -23.39 -0.19 9.84 16 24 O -0.54 -12.34 18.03 5.56 0.10 -12.24 16 25 C -0.12 -1.84 1.57 -155.78 -0.24 -2.09 16 26 C -0.12 -1.52 9.24 37.16 0.34 -1.18 16 27 C -0.11 -1.42 8.10 37.16 0.30 -1.12 16 28 C 0.08 1.28 10.54 -17.36 -0.18 1.09 16 29 N -0.30 -5.01 12.58 30.63 0.39 -4.62 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.17 1.77 8.06 -52.48 -0.42 1.34 16 34 H 0.05 1.17 7.91 -51.93 -0.41 0.76 16 35 H 0.12 2.96 5.56 -51.93 -0.29 2.67 16 36 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 37 H 0.05 1.11 7.81 -51.93 -0.41 0.70 16 38 H 0.07 1.48 6.62 -51.93 -0.34 1.13 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.09 2.03 7.18 -51.93 -0.37 1.65 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 48 H 0.06 0.90 8.03 -51.93 -0.42 0.48 16 49 H 0.06 0.84 6.96 -51.93 -0.36 0.48 16 50 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 51 H 0.06 0.73 7.82 -51.93 -0.41 0.32 16 52 H 0.18 2.96 8.06 -52.48 -0.42 2.54 16 LS Contribution 416.06 15.07 6.27 6.27 Total: -1.00 -30.01 416.06 -9.60 -39.61 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -8.84 Total: 6.62 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.80 Total: 3.31 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.30 Total: -58.83 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.10 Total: -12.24 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.01 -9.60 -39.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808162737.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.214 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds