Wall clock time and date at job start Wed Apr 1 2020 04:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34954 * 126.03700 * 2 1 4 4 C 1.35311 * 107.74601 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.04042 * 180.02562 * 4 3 2 6 6 H 1.08999 * 112.41902 * 329.98182 * 5 4 3 7 7 N 1.46358 * 113.05280 * 200.49661 * 5 4 3 8 8 C 1.46499 * 134.66491 * 64.54470 * 7 5 4 9 9 N 1.46497 * 109.47272 * 89.99876 * 8 7 5 10 10 C 1.36934 * 120.00239 * 270.00344 * 9 8 7 11 11 H 1.08004 * 120.00242 * 141.60190 * 10 9 8 12 12 C 1.38810 * 120.00277 * 321.59568 * 10 9 8 13 13 N 1.31627 * 119.99859 * 339.13674 * 12 10 9 14 14 Si 1.86792 * 120.00428 * 159.13486 * 12 10 9 15 15 H 1.48506 * 109.47170 * 60.00271 * 14 12 10 16 16 H 1.48502 * 109.47585 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47259 * 300.00360 * 14 12 10 18 18 C 1.46506 * 119.99745 * 90.00189 * 9 8 7 19 19 C 1.54264 * 110.02899 * 242.18685 * 18 9 8 20 20 C 1.54972 * 104.15922 * 217.13491 * 19 18 9 21 21 C 1.54885 * 102.77408 * 37.88935 * 20 19 18 22 22 C 1.53876 * 110.03268 * 124.97058 * 18 9 8 23 23 C 1.34598 * 90.67076 * 244.54810 * 7 5 4 24 24 O 1.21280 * 131.85237 * 180.02562 * 23 7 5 25 25 C 1.50566 * 96.30380 * 359.97438 * 23 7 5 26 26 C 1.52999 * 114.37907 * 246.60604 * 25 23 7 27 27 C 1.53007 * 114.37922 * 113.40060 * 25 23 7 28 28 C 1.39868 * 107.92194 * 0.26545 * 4 3 2 29 29 N 1.30843 * 108.19894 * 359.55316 * 28 4 3 30 30 H 1.09006 * 109.47033 * 89.99444 * 1 2 3 31 31 H 1.08996 * 109.47709 * 209.99954 * 1 2 3 32 32 H 1.09000 * 109.47274 * 330.00372 * 1 2 3 33 33 H 1.08007 * 126.12725 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.47419 * 210.00541 * 8 7 5 35 35 H 1.09005 * 109.47128 * 330.00494 * 8 7 5 36 36 H 0.96992 * 120.00025 * 175.01436 * 13 12 10 37 37 H 1.08992 * 110.01596 * 3.57381 * 18 9 8 38 38 H 1.09002 * 110.49191 * 335.78315 * 19 18 9 39 39 H 1.09002 * 110.48873 * 98.42978 * 19 18 9 40 40 H 1.09001 * 110.71589 * 279.57433 * 20 19 18 41 41 H 1.09000 * 110.76266 * 156.22331 * 20 19 18 42 42 H 1.09002 * 110.48616 * 203.40645 * 21 20 19 43 43 H 1.09005 * 110.48633 * 80.76493 * 21 20 19 44 44 H 1.08995 * 110.02963 * 238.57026 * 22 18 9 45 45 H 1.09003 * 110.03173 * 359.97438 * 22 18 9 46 46 H 1.08998 * 109.47229 * 152.69873 * 26 25 23 47 47 H 1.09005 * 109.47071 * 272.69961 * 26 25 23 48 48 H 1.08994 * 109.47559 * 32.69517 * 26 25 23 49 49 H 1.09000 * 109.46677 * 327.30305 * 27 25 23 50 50 H 1.08998 * 109.47406 * 87.29705 * 27 25 23 51 51 H 1.08996 * 109.47152 * 207.30649 * 27 25 23 52 52 H 1.08003 * 125.90448 * 179.73086 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5454 0.0013 6 1 4.5972 2.4966 -0.5027 7 7 5.9694 0.8548 -0.4697 8 6 6.3841 0.2630 -1.7441 9 7 7.0668 1.2753 -2.5535 10 6 6.3491 2.0617 -3.4146 11 1 6.6037 3.1046 -3.5332 12 6 5.2944 1.5185 -4.1353 13 7 5.2268 0.2175 -4.3235 14 14 3.9709 2.6337 -4.8380 15 1 4.5881 3.6017 -5.7800 16 1 2.9641 1.8140 -5.5589 17 1 3.3079 3.3722 -3.7333 18 6 8.5175 1.4464 -2.4415 19 6 8.8444 2.8646 -1.9301 20 6 10.1252 3.2619 -2.7069 21 6 9.8741 2.6602 -4.1118 22 6 9.1722 1.3162 -3.8280 23 6 6.5385 0.9842 0.7431 24 8 7.6179 0.6350 1.1719 25 6 5.3875 1.7085 1.3894 26 6 5.6916 3.1563 1.7796 27 6 4.6822 0.9165 2.4923 28 6 3.5347 -0.7320 -0.0052 29 7 2.2891 -1.1327 0.0006 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.9281 2.1194 0.0004 34 1 7.0624 -0.5689 -1.5547 35 1 5.5062 -0.0987 -2.2795 36 1 4.4540 -0.1693 -4.7638 37 1 8.9299 0.7004 -1.7623 38 1 8.0298 3.5509 -2.1616 39 1 9.0376 2.8483 -0.8575 40 1 11.0081 2.8167 -2.2481 41 1 10.2226 4.3461 -2.7627 42 1 10.8185 2.4953 -4.6305 43 1 9.2259 3.3133 -4.6962 44 1 9.9028 0.5074 -3.8214 45 1 8.4106 1.1252 -4.5841 46 1 4.7685 3.7359 1.7733 47 1 6.1283 3.1794 2.7781 48 1 6.3947 3.5851 1.0656 49 1 4.7131 -0.1464 2.2528 50 1 5.1864 1.0894 3.4431 51 1 3.6447 1.2421 2.5667 52 1 4.4054 -1.3710 -0.0104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808162737.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:01 Heat of formation + Delta-G solvation = 78.054048 kcal Electronic energy + Delta-G solvation = -33084.407891 eV Core-core repulsion = 29086.664451 eV Total energy + Delta-G solvation = -3997.743440 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.72171 -41.38237 -39.32101 -37.53863 -36.16198 -34.01069 -33.90329 -32.63307 -31.39832 -29.38029 -28.91142 -28.44069 -28.08435 -27.60492 -25.29276 -24.56288 -22.50616 -21.94190 -21.42386 -21.23993 -20.78159 -18.77727 -18.46408 -17.76300 -17.30404 -17.16871 -16.91142 -16.51214 -16.27230 -16.18789 -15.95604 -15.29185 -14.97015 -14.91873 -14.64384 -14.35501 -14.19976 -14.09457 -13.65906 -13.44332 -13.37106 -13.32030 -13.21236 -13.07475 -12.98482 -12.83841 -12.75290 -12.53913 -12.24989 -12.14716 -12.00578 -11.84979 -11.82980 -11.78784 -11.77286 -11.53696 -11.30247 -11.26106 -10.55223 -10.47941 -10.29208 -9.66821 -9.21104 -8.65780 -7.85361 -5.48847 0.97994 1.45580 1.48053 1.54255 1.70782 1.73744 1.77786 2.41895 2.55868 2.98783 3.30556 3.58717 3.66211 3.78371 3.93077 4.00481 4.03876 4.10973 4.19051 4.25323 4.35393 4.43844 4.47693 4.48308 4.63103 4.71324 4.71450 4.73642 4.84258 4.86839 4.90534 4.91666 4.93461 4.94799 4.98164 5.07167 5.13438 5.16227 5.19169 5.23500 5.27762 5.28803 5.45184 5.51239 5.57051 5.61710 5.64020 5.76451 5.99654 6.12401 6.21402 6.48733 6.75613 7.13072 7.49425 7.78385 8.36737 9.12275 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010037 B = 0.005173 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.957006 B = 5411.500611 C = 7116.581834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.376 5.376 3 C 0.077 3.923 4 C -0.242 4.242 5 C 0.212 3.788 6 H 0.089 0.911 7 N -0.611 5.611 8 C 0.380 3.620 9 N -0.575 5.575 10 C -0.244 4.244 11 H 0.055 0.945 12 C -0.019 4.019 13 N -0.912 5.912 14 Si 0.945 3.055 15 H -0.280 1.280 16 H -0.302 1.302 17 H -0.267 1.267 18 C 0.161 3.839 19 C -0.121 4.121 20 C -0.111 4.111 21 C -0.109 4.109 22 C -0.125 4.125 23 C 0.500 3.500 24 O -0.584 6.584 25 C -0.095 4.095 26 C -0.115 4.115 27 C -0.102 4.102 28 C 0.060 3.940 29 N -0.330 5.330 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.212 0.788 34 H 0.030 0.970 35 H 0.099 0.901 36 H 0.249 0.751 37 H 0.031 0.969 38 H 0.056 0.944 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.098 0.902 47 H 0.076 0.924 48 H 0.042 0.958 49 H 0.038 0.962 50 H 0.072 0.928 51 H 0.085 0.915 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.659 6.789 10.538 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.158 5.158 3 C -0.071 4.071 4 C -0.255 4.255 5 C 0.107 3.893 6 H 0.107 0.893 7 N -0.347 5.347 8 C 0.173 3.827 9 N -0.296 5.296 10 C -0.374 4.374 11 H 0.073 0.927 12 C -0.217 4.217 13 N -0.555 5.555 14 Si 0.773 3.227 15 H -0.206 1.206 16 H -0.229 1.229 17 H -0.192 1.192 18 C 0.054 3.946 19 C -0.160 4.160 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.164 4.164 23 C 0.287 3.713 24 O -0.464 6.464 25 C -0.099 4.099 26 C -0.173 4.173 27 C -0.159 4.159 28 C -0.125 4.125 29 N -0.152 5.152 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.228 0.772 34 H 0.048 0.952 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.117 0.883 47 H 0.095 0.905 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.091 0.909 51 H 0.104 0.896 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.059 5.341 10.298 14.126 hybrid contribution 0.107 0.348 -1.022 1.085 sum -7.952 5.689 9.277 13.478 Atomic orbital electron populations 1.22196 0.71841 1.06285 1.04204 1.48763 1.07869 1.03119 1.56020 1.22675 0.89642 0.94731 1.00018 1.19956 0.94600 0.93419 1.17518 1.20291 0.83513 0.93779 0.91766 0.89288 1.51906 1.16931 1.55323 1.10583 1.20717 0.96881 0.87039 0.78014 1.44602 1.01336 1.41541 1.42079 1.18870 1.11858 0.90904 1.15791 0.92704 1.25693 1.02898 0.96259 0.96876 1.70130 1.28960 1.11708 1.44699 0.85703 0.79758 0.78714 0.78500 1.20627 1.22863 1.19200 1.21256 0.84170 0.94886 0.94282 1.22621 0.97801 0.97746 0.97861 1.22409 0.96798 1.00544 0.95168 1.22193 0.99549 0.95803 0.97091 1.22394 0.98360 0.97432 0.98191 1.22888 0.86777 0.77994 0.83592 1.90556 1.25640 1.56038 1.74166 1.22477 0.92958 0.98713 0.95772 1.21473 1.03192 0.90757 1.01854 1.21347 1.00762 0.98056 0.95751 1.23422 0.94583 0.95160 0.99369 1.77262 1.01851 1.09860 1.26255 0.90550 0.88994 0.85919 0.77156 0.95190 0.88398 0.94189 0.95049 0.92547 0.94103 0.91145 0.90629 0.90684 0.92825 0.93156 0.93206 0.88282 0.90468 0.93877 0.94274 0.90919 0.89592 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 11.47 127.77 1.47 2.82 16 2 N -0.38 -9.45 4.01 -369.56 -1.48 -10.93 16 3 C 0.08 1.87 11.40 83.54 0.95 2.83 16 4 C -0.24 -7.50 3.92 -20.14 -0.08 -7.58 16 5 C 0.21 7.02 4.41 36.29 0.16 7.18 16 6 H 0.09 2.99 7.99 -2.39 -0.02 2.97 16 7 N -0.61 -25.13 3.08 -897.14 -2.77 -27.90 16 8 C 0.38 18.22 7.01 170.96 1.20 19.42 16 9 N -0.58 -27.79 2.62 -685.66 -1.79 -29.58 16 10 C -0.24 -12.34 7.77 84.03 0.65 -11.69 16 11 H 0.06 2.82 6.92 -2.91 -0.02 2.80 16 12 C -0.02 -1.00 4.96 84.86 0.42 -0.58 16 13 N -0.91 -50.38 11.49 21.65 0.25 -50.13 16 14 Si 0.95 41.69 29.61 68.60 2.03 43.73 16 15 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 16 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 18 C 0.16 7.09 3.42 45.71 0.16 7.25 16 19 C -0.12 -4.71 6.43 31.70 0.20 -4.50 16 20 C -0.11 -3.50 6.91 31.91 0.22 -3.28 16 21 C -0.11 -3.65 6.83 31.67 0.22 -3.44 16 22 C -0.12 -5.14 6.25 31.32 0.20 -4.94 16 23 C 0.50 20.14 8.20 79.70 0.65 20.79 16 24 O -0.58 -27.77 18.03 -3.03 -0.05 -27.82 16 25 C -0.10 -2.77 1.57 -53.01 -0.08 -2.85 16 26 C -0.12 -2.68 9.24 71.98 0.67 -2.02 16 27 C -0.10 -2.48 8.10 71.98 0.58 -1.89 16 28 C 0.06 2.09 10.54 85.23 0.90 2.99 16 29 N -0.33 -10.95 12.58 -57.02 -0.72 -11.67 16 30 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.21 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.03 1.51 7.91 -2.39 -0.02 1.49 16 35 H 0.10 5.18 5.56 -2.38 -0.01 5.17 16 36 H 0.25 13.64 8.32 -92.71 -0.77 12.87 16 37 H 0.03 1.47 7.81 -2.39 -0.02 1.45 16 38 H 0.06 2.35 6.62 -2.39 -0.02 2.33 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 45 H 0.05 2.42 7.18 -2.39 -0.02 2.40 16 46 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.08 1.60 8.12 -2.38 -0.02 1.58 16 48 H 0.04 1.18 8.03 -2.39 -0.02 1.16 16 49 H 0.04 1.11 6.96 -2.39 -0.02 1.10 16 50 H 0.07 1.57 8.12 -2.39 -0.02 1.55 16 51 H 0.09 1.72 7.82 -2.39 -0.02 1.70 16 52 H 0.16 5.81 8.06 -2.91 -0.02 5.79 16 Total: -1.00 -69.66 416.06 4.84 -64.82 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.89 Total: 29.00 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 8.48 Total: 20.49 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -6.51 Total: -130.21 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.05 Total: -27.82 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.73 kcal Total: -69.66 4.84 -64.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808162737.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.875 kcal (2) G-P(sol) polarization free energy of solvation -69.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds