Wall clock time and date at job start Wed Apr 1 2020 04:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34952 * 126.03760 * 2 1 4 4 C 1.35314 * 107.75006 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.04216 * 180.02562 * 4 3 2 6 6 H 1.08999 * 113.21664 * 326.62531 * 5 4 3 7 7 N 1.46748 * 114.48263 * 193.75843 * 5 4 3 8 8 C 1.46504 * 130.88440 * 66.52952 * 7 5 4 9 9 N 1.46899 * 109.47073 * 79.53697 * 8 7 5 10 10 C 1.46849 * 110.99947 * 32.21501 * 9 8 7 11 11 C 1.53041 * 109.51996 * 185.83853 * 10 9 8 12 12 C 1.53117 * 109.27991 * 300.81466 * 11 10 9 13 13 C 1.50703 * 109.57733 * 177.58972 * 12 11 10 14 14 H 1.07994 * 120.00035 * 240.28935 * 13 12 11 15 15 C 1.37875 * 119.99756 * 60.28927 * 13 12 11 16 16 N 1.31520 * 119.99685 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00148 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47072 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47049 * 119.99931 * 17 15 13 20 20 H 1.48504 * 109.46988 * 240.00026 * 17 15 13 21 21 C 1.53124 * 109.15674 * 57.65767 * 12 11 10 22 22 C 1.46849 * 110.99694 * 156.41967 * 9 8 7 23 23 C 1.35078 * 98.23312 * 246.48861 * 7 5 4 24 24 O 1.21287 * 135.57302 * 180.02562 * 23 7 5 25 25 C 1.50931 * 88.86489 * 359.75420 * 23 7 5 26 26 C 1.53005 * 113.27356 * 115.24233 * 25 23 7 27 27 C 1.53005 * 113.27320 * 245.04472 * 25 23 7 28 28 C 1.39869 * 107.91853 * 0.25961 * 4 3 2 29 29 N 1.30843 * 108.20365 * 359.55826 * 28 4 3 30 30 H 1.09001 * 109.46911 * 90.00293 * 1 2 3 31 31 H 1.08998 * 109.46774 * 209.99712 * 1 2 3 32 32 H 1.08998 * 109.46988 * 330.00253 * 1 2 3 33 33 H 1.08002 * 126.12583 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.47102 * 199.53524 * 8 7 5 35 35 H 1.09000 * 109.47300 * 319.53764 * 8 7 5 36 36 H 1.08996 * 109.46089 * 305.85283 * 10 9 8 37 37 H 1.09000 * 109.46518 * 65.82206 * 10 9 8 38 38 H 1.09004 * 109.50081 * 180.87787 * 11 10 9 39 39 H 1.08997 * 109.50771 * 60.75993 * 11 10 9 40 40 H 1.09001 * 109.52717 * 297.75328 * 12 11 10 41 41 H 0.96998 * 119.99773 * 179.97438 * 16 15 13 42 42 H 1.09008 * 109.50020 * 182.40344 * 21 12 11 43 43 H 1.09000 * 109.53554 * 62.30704 * 21 12 11 44 44 H 1.09002 * 109.46472 * 294.17705 * 22 9 8 45 45 H 1.09000 * 109.46320 * 54.16107 * 22 9 8 46 46 H 1.09002 * 109.46785 * 79.50213 * 26 25 23 47 47 H 1.08994 * 109.47359 * 199.51085 * 26 25 23 48 48 H 1.09004 * 109.46766 * 319.51144 * 26 25 23 49 49 H 1.09001 * 109.46818 * 40.49711 * 27 25 23 50 50 H 1.09006 * 109.46827 * 160.49053 * 27 25 23 51 51 H 1.08989 * 109.47071 * 280.49457 * 27 25 23 52 52 H 1.08001 * 125.89818 * 179.73590 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0006 5 6 4.7680 1.5455 -0.0002 6 1 4.6292 2.4760 -0.5506 7 7 6.0184 0.8465 -0.3186 8 6 6.4718 0.2084 -1.5570 9 7 6.9623 1.2353 -2.4859 10 6 7.5658 2.3585 -1.7575 11 6 7.9324 3.4697 -2.7440 12 6 8.9170 2.9212 -3.7803 13 6 9.2369 3.9934 -4.7899 14 1 9.0108 3.8365 -5.8342 15 6 9.8181 5.1746 -4.3803 16 7 10.0929 5.3658 -3.1084 17 14 10.2153 6.5034 -5.6317 18 1 9.8103 6.0456 -6.9851 19 1 9.4759 7.7443 -5.2876 20 1 11.6749 6.7766 -5.6172 21 6 8.2827 1.7223 -4.4908 22 6 7.9060 0.6617 -3.4538 23 6 6.6227 0.9740 0.8827 24 8 7.6863 0.6360 1.3576 25 6 5.4104 1.7237 1.3792 26 6 4.6613 0.9911 2.4941 27 6 5.7041 3.1838 1.7296 28 6 3.5347 -0.7320 -0.0070 29 7 2.2892 -1.1327 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.9281 2.1194 -0.0004 34 1 7.2763 -0.4918 -1.3316 35 1 5.6407 -0.3283 -2.0146 36 1 6.8539 2.7420 -1.0267 37 1 8.4649 2.0175 -1.2442 38 1 8.3945 4.2969 -2.2050 39 1 7.0318 3.8209 -3.2477 40 1 9.8333 2.6059 -3.2812 41 1 10.5022 6.1967 -2.8203 42 1 8.9952 1.3009 -5.2001 43 1 7.3877 2.0454 -5.0226 44 1 8.8035 0.3286 -2.9325 45 1 7.4410 -0.1871 -3.9552 46 1 5.1791 1.1439 3.4410 47 1 3.6464 1.3818 2.5676 48 1 4.6249 -0.0746 2.2679 49 1 6.3763 3.6083 0.9838 50 1 4.7721 3.7490 1.7422 51 1 6.1732 3.2344 2.7121 52 1 4.4055 -1.3708 -0.0130 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808176957.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:55 Heat of formation + Delta-G solvation = 86.599204 kcal Electronic energy + Delta-G solvation = -32060.179878 eV Core-core repulsion = 28062.806983 eV Total energy + Delta-G solvation = -3997.372895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.01040 -40.72995 -38.00339 -36.75555 -34.28773 -33.46955 -32.61844 -30.94983 -30.71592 -29.76858 -27.77259 -27.48688 -27.02190 -25.04945 -24.33712 -22.36448 -21.88828 -21.32806 -20.67501 -20.57147 -18.56798 -18.02288 -17.06454 -16.86038 -16.34091 -16.12250 -15.86680 -15.69577 -14.85732 -14.65811 -14.36601 -14.17238 -13.98758 -13.72687 -13.53528 -13.37314 -13.10721 -12.92157 -12.84438 -12.73420 -12.57008 -12.34436 -12.26962 -12.18395 -12.15945 -11.73019 -11.49161 -11.30109 -11.05815 -10.94691 -10.76491 -10.71308 -10.40276 -10.17388 -9.97668 -9.66200 -9.57173 -9.36908 -9.06177 -8.85168 -8.63219 -8.58678 -8.25892 -7.71446 -5.93203 -3.98668 1.60885 2.24050 2.42566 2.57706 3.08384 3.32224 3.40301 3.44375 3.94722 4.19980 4.40172 4.47490 4.51753 4.58131 4.70391 4.78400 4.91219 4.93163 5.03848 5.09544 5.29811 5.36827 5.38921 5.50156 5.54629 5.63099 5.66709 5.70885 5.71979 5.77057 5.84700 5.90407 5.99133 6.09324 6.19935 6.28696 6.30980 6.35914 6.52820 6.63951 6.68043 6.68744 6.76486 6.89114 7.10729 7.19264 7.44003 7.45780 7.63604 7.69063 7.85825 8.08773 8.19649 8.35343 8.52141 9.05299 9.65477 11.12821 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014193 B = 0.002875 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.355055 B = 9737.972347 C =10127.426055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.377 5.377 3 C 0.073 3.927 4 C -0.232 4.232 5 C 0.229 3.771 6 H 0.111 0.889 7 N -0.616 5.616 8 C 0.278 3.722 9 N -0.546 5.546 10 C 0.061 3.939 11 C -0.101 4.101 12 C 0.047 3.953 13 C -0.509 4.509 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.104 4.104 22 C 0.062 3.938 23 C 0.544 3.456 24 O -0.497 6.497 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.131 4.131 28 C 0.069 3.931 29 N -0.297 5.297 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.177 0.823 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.091 0.909 39 H 0.041 0.959 40 H 0.020 0.980 41 H 0.258 0.742 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.026 0.974 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.067 0.933 52 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.255 -8.539 10.545 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.158 5.158 3 C -0.074 4.074 4 C -0.244 4.244 5 C 0.125 3.875 6 H 0.129 0.871 7 N -0.351 5.351 8 C 0.067 3.933 9 N -0.274 5.274 10 C -0.067 4.067 11 C -0.140 4.140 12 C 0.029 3.971 13 C -0.547 4.547 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.717 3.283 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.142 4.142 22 C -0.066 4.066 23 C 0.330 3.670 24 O -0.369 6.369 25 C -0.123 4.123 26 C -0.175 4.175 27 C -0.189 4.189 28 C -0.117 4.117 29 N -0.118 5.118 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.194 0.806 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.109 0.891 39 H 0.060 0.940 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.086 0.914 52 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -20.882 -9.533 10.510 25.247 hybrid contribution 1.469 1.091 -0.468 1.888 sum -19.414 -8.442 10.042 23.431 Atomic orbital electron populations 1.21854 0.74126 1.04435 1.03475 1.48461 1.06647 1.03799 1.56919 1.22172 0.90336 0.93549 1.01367 1.19775 0.93542 0.93966 1.17127 1.20307 0.81495 0.93075 0.92620 0.87140 1.50964 1.17052 1.56350 1.10771 1.22141 0.98103 0.91272 0.81766 1.62430 1.39440 1.08856 1.16682 1.22214 0.95703 0.92185 0.96563 1.21642 0.98706 0.96663 0.96941 1.18690 0.93409 0.91486 0.93564 1.21234 1.39332 1.00338 0.93793 0.92752 1.24976 0.95678 0.98312 0.95103 1.69899 1.43276 1.25584 1.14222 0.86592 0.77908 0.81979 0.81832 1.19869 1.21119 1.21175 1.21656 0.99890 0.96238 0.96388 1.22107 0.92783 0.97452 0.94241 1.21543 0.86304 0.77610 0.81588 1.90761 1.23496 1.54098 1.68568 1.22936 0.94675 0.98201 0.96511 1.21511 0.99650 0.99908 0.96443 1.21624 1.02537 0.91929 1.02796 1.23637 0.94931 0.94339 0.98827 1.77406 1.01558 1.08126 1.24712 0.90678 0.89372 0.89417 0.80586 0.93365 0.89686 0.92508 0.96210 0.89098 0.94000 0.96230 0.93194 0.93139 0.92474 0.95617 0.92340 0.91960 0.91633 0.92278 0.91321 0.91169 0.91409 0.80585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.45 11.47 59.85 0.69 1.14 16 2 N -0.38 -3.21 4.01 -68.16 -0.27 -3.48 16 3 C 0.07 0.57 11.40 -17.22 -0.20 0.38 16 4 C -0.23 -2.26 4.00 -105.05 -0.42 -2.68 16 5 C 0.23 2.49 4.17 -68.84 -0.29 2.21 16 6 H 0.11 1.20 7.82 -51.93 -0.41 0.80 16 7 N -0.62 -8.45 1.42 -202.79 -0.29 -8.74 16 8 C 0.28 4.13 7.01 -63.31 -0.44 3.68 16 9 N -0.55 -9.74 4.91 -238.57 -1.17 -10.91 16 10 C 0.06 1.23 4.69 -3.83 -0.02 1.21 16 11 C -0.10 -2.41 5.12 -26.65 -0.14 -2.55 16 12 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 13 C -0.51 -14.09 8.56 -34.44 -0.29 -14.38 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 16 N -0.89 -25.65 11.37 55.43 0.63 -25.02 16 17 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.10 -2.20 5.32 -26.65 -0.14 -2.34 16 22 C 0.06 1.14 5.31 -3.83 -0.02 1.12 16 23 C 0.54 8.30 7.77 -10.74 -0.08 8.22 16 24 O -0.50 -9.61 18.03 5.55 0.10 -9.51 16 25 C -0.12 -1.32 1.35 -156.59 -0.21 -1.53 16 26 C -0.12 -1.10 7.96 37.16 0.30 -0.80 16 27 C -0.13 -1.34 9.06 37.16 0.34 -1.01 16 28 C 0.07 0.75 10.60 -17.36 -0.18 0.57 16 29 N -0.30 -3.35 12.58 30.63 0.39 -2.97 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.05 5.26 -51.93 -0.27 0.78 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.05 1.04 8.14 -51.92 -0.42 0.61 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.52 7.92 -51.93 -0.41 0.10 16 48 H 0.06 0.61 6.92 -51.93 -0.36 0.25 16 49 H 0.07 0.84 7.49 -51.93 -0.39 0.46 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.07 0.67 8.14 -51.94 -0.42 0.25 16 52 H 0.18 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 410.05 15.07 6.18 6.18 Total: -1.00 -33.55 410.05 -9.74 -43.29 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.87 Total: -1.05 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.41 Total: -4.21 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.72 Total: -51.12 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.10 Total: -9.51 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.55 -9.74 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808176957.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.894 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds