Wall clock time and date at job start Wed Apr 1 2020 04:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34952 * 126.03760 * 2 1 4 4 C 1.35314 * 107.75006 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.04216 * 180.02562 * 4 3 2 6 6 H 1.08999 * 113.21664 * 326.62531 * 5 4 3 7 7 N 1.46748 * 114.48263 * 193.75843 * 5 4 3 8 8 C 1.46504 * 130.88440 * 66.52952 * 7 5 4 9 9 N 1.46899 * 109.47073 * 79.53697 * 8 7 5 10 10 C 1.46849 * 110.99947 * 32.21501 * 9 8 7 11 11 C 1.53041 * 109.51996 * 185.83853 * 10 9 8 12 12 C 1.53117 * 109.27991 * 300.81466 * 11 10 9 13 13 C 1.50703 * 109.57733 * 177.58972 * 12 11 10 14 14 H 1.07994 * 120.00035 * 240.28935 * 13 12 11 15 15 C 1.37875 * 119.99756 * 60.28927 * 13 12 11 16 16 N 1.31520 * 119.99685 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00148 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47072 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47049 * 119.99931 * 17 15 13 20 20 H 1.48504 * 109.46988 * 240.00026 * 17 15 13 21 21 C 1.53124 * 109.15674 * 57.65767 * 12 11 10 22 22 C 1.46849 * 110.99694 * 156.41967 * 9 8 7 23 23 C 1.35078 * 98.23312 * 246.48861 * 7 5 4 24 24 O 1.21287 * 135.57302 * 180.02562 * 23 7 5 25 25 C 1.50931 * 88.86489 * 359.75420 * 23 7 5 26 26 C 1.53005 * 113.27356 * 115.24233 * 25 23 7 27 27 C 1.53005 * 113.27320 * 245.04472 * 25 23 7 28 28 C 1.39869 * 107.91853 * 0.25961 * 4 3 2 29 29 N 1.30843 * 108.20365 * 359.55826 * 28 4 3 30 30 H 1.09001 * 109.46911 * 90.00293 * 1 2 3 31 31 H 1.08998 * 109.46774 * 209.99712 * 1 2 3 32 32 H 1.08998 * 109.46988 * 330.00253 * 1 2 3 33 33 H 1.08002 * 126.12583 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.47102 * 199.53524 * 8 7 5 35 35 H 1.09000 * 109.47300 * 319.53764 * 8 7 5 36 36 H 1.08996 * 109.46089 * 305.85283 * 10 9 8 37 37 H 1.09000 * 109.46518 * 65.82206 * 10 9 8 38 38 H 1.09004 * 109.50081 * 180.87787 * 11 10 9 39 39 H 1.08997 * 109.50771 * 60.75993 * 11 10 9 40 40 H 1.09001 * 109.52717 * 297.75328 * 12 11 10 41 41 H 0.96998 * 119.99773 * 179.97438 * 16 15 13 42 42 H 1.09008 * 109.50020 * 182.40344 * 21 12 11 43 43 H 1.09000 * 109.53554 * 62.30704 * 21 12 11 44 44 H 1.09002 * 109.46472 * 294.17705 * 22 9 8 45 45 H 1.09000 * 109.46320 * 54.16107 * 22 9 8 46 46 H 1.09002 * 109.46785 * 79.50213 * 26 25 23 47 47 H 1.08994 * 109.47359 * 199.51085 * 26 25 23 48 48 H 1.09004 * 109.46766 * 319.51144 * 26 25 23 49 49 H 1.09001 * 109.46818 * 40.49711 * 27 25 23 50 50 H 1.09006 * 109.46827 * 160.49053 * 27 25 23 51 51 H 1.08989 * 109.47071 * 280.49457 * 27 25 23 52 52 H 1.08001 * 125.89818 * 179.73590 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0006 5 6 4.7680 1.5455 -0.0002 6 1 4.6292 2.4760 -0.5506 7 7 6.0184 0.8465 -0.3186 8 6 6.4718 0.2084 -1.5570 9 7 6.9623 1.2353 -2.4859 10 6 7.5658 2.3585 -1.7575 11 6 7.9324 3.4697 -2.7440 12 6 8.9170 2.9212 -3.7803 13 6 9.2369 3.9934 -4.7899 14 1 9.0108 3.8365 -5.8342 15 6 9.8181 5.1746 -4.3803 16 7 10.0929 5.3658 -3.1084 17 14 10.2153 6.5034 -5.6317 18 1 9.8103 6.0456 -6.9851 19 1 9.4759 7.7443 -5.2876 20 1 11.6749 6.7766 -5.6172 21 6 8.2827 1.7223 -4.4908 22 6 7.9060 0.6617 -3.4538 23 6 6.6227 0.9740 0.8827 24 8 7.6863 0.6360 1.3576 25 6 5.4104 1.7237 1.3792 26 6 4.6613 0.9911 2.4941 27 6 5.7041 3.1838 1.7296 28 6 3.5347 -0.7320 -0.0070 29 7 2.2892 -1.1327 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.9281 2.1194 -0.0004 34 1 7.2763 -0.4918 -1.3316 35 1 5.6407 -0.3283 -2.0146 36 1 6.8539 2.7420 -1.0267 37 1 8.4649 2.0175 -1.2442 38 1 8.3945 4.2969 -2.2050 39 1 7.0318 3.8209 -3.2477 40 1 9.8333 2.6059 -3.2812 41 1 10.5022 6.1967 -2.8203 42 1 8.9952 1.3009 -5.2001 43 1 7.3877 2.0454 -5.0226 44 1 8.8035 0.3286 -2.9325 45 1 7.4410 -0.1871 -3.9552 46 1 5.1791 1.1439 3.4410 47 1 3.6464 1.3818 2.5676 48 1 4.6249 -0.0746 2.2679 49 1 6.3763 3.6083 0.9838 50 1 4.7721 3.7490 1.7422 51 1 6.1732 3.2344 2.7121 52 1 4.4055 -1.3708 -0.0130 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808176957.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:54 Heat of formation + Delta-G solvation = 66.245287 kcal Electronic energy + Delta-G solvation = -32061.062490 eV Core-core repulsion = 28062.806983 eV Total energy + Delta-G solvation = -3998.255507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.89837 -41.59509 -39.62659 -38.00757 -35.96432 -34.12587 -34.03705 -32.52634 -31.56701 -31.45604 -28.82572 -28.46732 -27.85734 -26.66163 -25.34661 -23.98187 -23.55966 -22.03412 -21.88844 -21.41434 -20.37615 -18.96394 -18.49365 -18.08455 -17.81185 -17.25454 -16.99524 -16.52135 -16.29185 -15.94911 -15.59850 -15.35751 -15.10422 -14.87557 -14.73298 -14.58419 -14.48157 -14.23781 -13.92928 -13.72441 -13.51760 -13.45058 -13.37319 -13.24020 -13.09060 -12.97191 -12.89337 -12.85292 -12.59695 -12.28119 -12.17312 -12.04819 -11.91334 -11.87694 -11.52849 -11.40809 -10.84242 -10.72187 -10.61627 -10.38358 -10.31305 -10.10955 -9.29535 -9.23854 -8.06827 -6.21115 0.98606 1.37314 1.40766 1.42328 1.54145 1.59866 1.74498 2.08797 2.44493 2.93147 3.03778 3.19875 3.50869 3.60484 3.98125 4.00486 4.09164 4.13562 4.16671 4.21739 4.29941 4.33833 4.37420 4.47062 4.53503 4.55538 4.70111 4.70997 4.80097 4.80534 4.82579 4.88547 4.88982 4.91969 4.94307 5.01357 5.03966 5.07230 5.21123 5.23425 5.26812 5.38264 5.41884 5.54792 5.60736 5.63007 5.66791 5.97841 6.00739 6.17824 6.19540 6.27417 6.39711 6.75948 6.90851 7.16525 7.46956 8.97985 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014193 B = 0.002875 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.355055 B = 9737.972347 C =10127.426055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.375 5.375 3 C 0.092 3.908 4 C -0.248 4.248 5 C 0.240 3.760 6 H 0.119 0.881 7 N -0.617 5.617 8 C 0.279 3.721 9 N -0.542 5.542 10 C 0.081 3.919 11 C -0.089 4.089 12 C 0.042 3.958 13 C -0.530 4.530 14 H 0.053 0.947 15 C 0.010 3.990 16 N -0.919 5.919 17 Si 0.956 3.044 18 H -0.266 1.266 19 H -0.278 1.278 20 H -0.284 1.284 21 C -0.096 4.096 22 C 0.067 3.933 23 C 0.525 3.475 24 O -0.551 6.551 25 C -0.103 4.103 26 C -0.109 4.109 27 C -0.130 4.130 28 C 0.059 3.941 29 N -0.331 5.331 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.216 0.784 34 H 0.038 0.962 35 H 0.112 0.888 36 H 0.075 0.925 37 H -0.015 1.015 38 H 0.057 0.943 39 H 0.039 0.961 40 H -0.023 1.023 41 H 0.259 0.741 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.011 0.989 45 H 0.096 0.904 46 H 0.062 0.938 47 H 0.090 0.910 48 H 0.047 0.953 49 H 0.042 0.958 50 H 0.106 0.894 51 H 0.068 0.932 52 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.801 -7.793 10.138 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.156 5.156 3 C -0.056 4.056 4 C -0.261 4.261 5 C 0.137 3.863 6 H 0.136 0.864 7 N -0.351 5.351 8 C 0.068 3.932 9 N -0.269 5.269 10 C -0.047 4.047 11 C -0.127 4.127 12 C 0.024 3.976 13 C -0.568 4.568 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.559 5.559 17 Si 0.781 3.219 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.210 1.210 21 C -0.133 4.133 22 C -0.062 4.062 23 C 0.312 3.688 24 O -0.427 6.427 25 C -0.107 4.107 26 C -0.167 4.167 27 C -0.188 4.188 28 C -0.126 4.126 29 N -0.153 5.153 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.233 0.767 34 H 0.056 0.944 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.003 0.997 38 H 0.076 0.924 39 H 0.058 0.942 40 H -0.005 1.005 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.030 0.970 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.109 0.891 48 H 0.066 0.934 49 H 0.061 0.939 50 H 0.124 0.876 51 H 0.087 0.913 52 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -24.486 -8.807 10.087 27.909 hybrid contribution 2.517 0.832 -0.345 2.673 sum -21.970 -7.975 9.742 25.321 Atomic orbital electron populations 1.22210 0.71830 1.06079 1.04547 1.48806 1.07947 1.03250 1.55596 1.22720 0.89369 0.94905 0.98628 1.19630 0.93821 0.93218 1.19424 1.20424 0.80807 0.93145 0.91895 0.86375 1.51201 1.18126 1.55909 1.09908 1.22177 0.98560 0.90361 0.82052 1.62445 1.38352 1.09138 1.17005 1.21877 0.94871 0.92198 0.95738 1.21379 0.97734 0.96783 0.96852 1.18675 0.92366 0.92907 0.93686 1.21580 1.39732 1.01292 0.94168 0.92825 1.25787 0.95505 1.00584 0.96939 1.70056 1.43682 1.26144 1.15992 0.85543 0.77571 0.79139 0.79613 1.19031 1.20353 1.21013 1.21510 0.99627 0.95350 0.96850 1.22066 0.92867 0.97515 0.93706 1.22449 0.86598 0.77378 0.82344 1.90711 1.25943 1.56175 1.69847 1.22889 0.92156 0.98168 0.97491 1.21475 1.00640 0.99055 0.95534 1.21663 1.03784 0.91410 1.01942 1.23593 0.94824 0.94941 0.99261 1.77357 1.01998 1.09943 1.26029 0.89852 0.89418 0.86186 0.76712 0.94363 0.87067 0.90668 0.99665 0.92425 0.94193 1.00513 0.93159 0.92759 0.92176 0.97040 0.88549 0.91880 0.89121 0.93414 0.93880 0.87581 0.91313 0.81497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 11.47 127.77 1.47 1.94 16 2 N -0.37 -5.14 4.01 -369.57 -1.48 -6.62 16 3 C 0.09 1.06 11.40 83.54 0.95 2.01 16 4 C -0.25 -4.18 4.00 -20.14 -0.08 -4.26 16 5 C 0.24 4.72 4.17 44.27 0.18 4.91 16 6 H 0.12 2.20 7.82 -2.39 -0.02 2.18 16 7 N -0.62 -16.71 1.42 -913.71 -1.30 -18.02 16 8 C 0.28 8.12 7.01 170.81 1.20 9.32 16 9 N -0.54 -19.08 4.91 -908.68 -4.46 -23.54 16 10 C 0.08 3.38 4.69 86.33 0.40 3.79 16 11 C -0.09 -4.39 5.12 30.65 0.16 -4.23 16 12 C 0.04 2.21 2.16 -11.46 -0.02 2.19 16 13 C -0.53 -29.95 8.56 25.60 0.22 -29.73 16 14 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 15 C 0.01 0.57 5.31 84.65 0.45 1.02 16 16 N -0.92 -54.62 11.37 21.45 0.24 -54.37 16 17 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 21 C -0.10 -4.06 5.32 30.65 0.16 -3.89 16 22 C 0.07 2.40 5.31 86.33 0.46 2.86 16 23 C 0.52 16.41 7.77 87.68 0.68 17.09 16 24 O -0.55 -22.54 18.03 -3.05 -0.05 -22.59 16 25 C -0.10 -2.15 1.35 -52.38 -0.07 -2.22 16 26 C -0.11 -1.84 7.96 71.98 0.57 -1.27 16 27 C -0.13 -2.47 9.06 71.98 0.65 -1.81 16 28 C 0.06 1.21 10.60 85.23 0.90 2.11 16 29 N -0.33 -6.91 12.58 -57.02 -0.72 -7.63 16 30 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.12 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.22 0.68 8.06 -2.91 -0.02 0.65 16 34 H 0.04 1.21 7.88 -2.39 -0.02 1.19 16 35 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.08 2.83 5.26 -2.39 -0.01 2.81 16 37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.06 3.22 6.17 -2.38 -0.01 3.21 16 39 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 40 H -0.02 -1.40 8.14 -2.39 -0.02 -1.42 16 41 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.10 2.80 8.12 -2.39 -0.02 2.78 16 46 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.09 1.09 7.92 -2.39 -0.02 1.07 16 48 H 0.05 0.93 6.92 -2.38 -0.02 0.91 16 49 H 0.04 1.04 7.49 -2.39 -0.02 1.02 16 50 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 51 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 52 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -77.50 410.05 3.43 -74.07 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.89 Total: 12.52 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 8.29 Total: -0.19 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -7.72 Total: -110.18 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -77.50 3.43 -74.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808176957.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.316 kcal (2) G-P(sol) polarization free energy of solvation -77.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds