Wall clock time and date at job start Wed Apr 1 2020 04:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34941 * 126.03872 * 2 1 4 4 C 1.35315 * 107.74682 * 179.74848 * 3 2 1 5 5 C 1.50700 * 126.04054 * 180.26850 * 4 3 2 6 6 H 1.09004 * 112.91774 * 30.09631 * 5 4 3 7 7 N 1.47391 * 113.70456 * 161.70805 * 5 4 3 8 8 C 1.46498 * 132.38234 * 294.35970 * 7 5 4 9 9 N 1.46903 * 109.46824 * 265.12996 * 8 7 5 10 10 C 1.46847 * 111.00418 * 31.80836 * 9 8 7 11 11 C 1.53026 * 109.52313 * 185.83694 * 10 9 8 12 12 C 1.53123 * 109.27992 * 300.81612 * 11 10 9 13 13 C 1.50694 * 109.57412 * 177.59259 * 12 11 10 14 14 H 1.08001 * 120.00048 * 246.09705 * 13 12 11 15 15 C 1.37885 * 120.00238 * 66.09991 * 13 12 11 16 16 N 1.31516 * 119.99476 * 7.98407 * 15 13 12 17 17 Si 1.86792 * 120.00029 * 187.98064 * 15 13 12 18 18 H 1.48503 * 109.47187 * 94.98898 * 17 15 13 19 19 H 1.48506 * 109.46969 * 214.98613 * 17 15 13 20 20 H 1.48500 * 109.47743 * 334.98257 * 17 15 13 21 21 C 1.53116 * 109.15810 * 57.65579 * 12 11 10 22 22 C 1.46850 * 110.99359 * 156.01235 * 9 8 7 23 23 C 1.35837 * 95.23783 * 114.40807 * 7 5 4 24 24 O 1.21282 * 134.17704 * 179.97438 * 23 7 5 25 25 C 1.51512 * 91.64876 * 359.97438 * 23 7 5 26 26 C 1.52999 * 113.69180 * 245.57547 * 25 23 7 27 27 C 1.53000 * 113.69220 * 114.42951 * 25 23 7 28 28 C 1.39867 * 107.91778 * 0.39782 * 4 3 2 29 29 N 1.30832 * 108.20173 * 359.59680 * 28 4 3 30 30 H 1.09007 * 109.47225 * 269.97679 * 1 2 3 31 31 H 1.09001 * 109.46958 * 29.97120 * 1 2 3 32 32 H 1.09000 * 109.47231 * 149.97926 * 1 2 3 33 33 H 1.08011 * 126.12967 * 359.97438 * 3 2 1 34 34 H 1.08994 * 109.46932 * 25.13364 * 8 7 5 35 35 H 1.09006 * 109.46729 * 145.13771 * 8 7 5 36 36 H 1.09002 * 109.45741 * 305.84933 * 10 9 8 37 37 H 1.08997 * 109.46099 * 65.81697 * 10 9 8 38 38 H 1.09000 * 109.50377 * 180.87767 * 11 10 9 39 39 H 1.08997 * 109.54231 * 60.77915 * 11 10 9 40 40 H 1.09001 * 109.51931 * 297.75235 * 12 11 10 41 41 H 0.97000 * 119.99706 * 179.97438 * 16 15 13 42 42 H 1.08997 * 109.50285 * 182.40262 * 21 12 11 43 43 H 1.09006 * 109.53753 * 62.30773 * 21 12 11 44 44 H 1.08997 * 109.46545 * 294.17819 * 22 9 8 45 45 H 1.09004 * 109.46086 * 54.16037 * 22 9 8 46 46 H 1.09000 * 109.47359 * 157.00426 * 26 25 23 47 47 H 1.09008 * 109.47318 * 277.00683 * 26 25 23 48 48 H 1.09002 * 109.47473 * 37.00702 * 26 25 23 49 49 H 1.08998 * 109.47373 * 322.99745 * 27 25 23 50 50 H 1.09001 * 109.47220 * 82.99612 * 27 25 23 51 51 H 1.09001 * 109.47401 * 202.99595 * 27 25 23 52 52 H 1.08001 * 125.89717 * 179.86636 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0057 5 6 4.7680 1.5452 0.0134 6 1 4.6038 2.4974 0.5179 7 7 5.9944 0.8489 0.4419 8 6 6.3980 0.2552 1.7189 9 7 7.1850 1.2305 2.4853 10 6 6.7416 2.6020 2.2042 11 6 7.6735 3.5941 2.9034 12 6 7.6530 3.3303 4.4116 13 6 8.6134 4.2650 5.1007 14 1 9.4922 3.8718 5.5901 15 6 8.3702 5.6222 5.1066 16 7 7.2275 6.0873 4.6511 17 14 9.6636 6.8000 5.7615 18 1 10.4845 7.3105 4.6342 19 1 8.9967 7.9382 6.4434 20 1 10.5379 6.0878 6.7278 21 6 8.0720 1.8812 4.6740 22 6 7.1286 0.9386 3.9233 23 6 6.6206 0.9503 -0.7593 24 8 7.7004 0.5952 -1.1821 25 6 5.4390 1.6818 -1.3628 26 6 4.7329 0.8994 -2.4719 27 6 5.7466 3.1282 -1.7553 28 6 3.5346 -0.7322 0.0000 29 7 2.2891 -1.1327 0.0000 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8898 -0.5141 33 1 1.9282 2.1194 -0.0004 34 1 5.5103 -0.0224 2.2872 35 1 7.0022 -0.6326 1.5319 36 1 6.7650 2.7779 1.1287 37 1 5.7247 2.7375 2.5722 38 1 7.3350 4.6115 2.7073 39 1 8.6884 3.4693 2.5259 40 1 6.6463 3.4937 4.7962 41 1 7.0562 7.0421 4.6555 42 1 8.0183 1.6747 5.7428 43 1 9.0932 1.7281 4.3247 44 1 6.1098 1.0819 4.2833 45 1 7.4332 -0.0936 4.0966 46 1 3.7083 1.2573 -2.5734 47 1 5.2633 1.0443 -3.4132 48 1 4.7239 -0.1610 -2.2195 49 1 6.4203 3.5688 -1.0204 50 1 6.2190 3.1456 -2.7375 51 1 4.8197 3.7009 -1.7878 52 1 4.4053 -1.3711 0.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808176958.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:57 Heat of formation + Delta-G solvation = 64.033641 kcal Electronic energy + Delta-G solvation = -32076.328765 eV Core-core repulsion = 28077.977355 eV Total energy + Delta-G solvation = -3998.351411 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.80478 -41.52703 -39.63096 -37.86263 -35.93020 -34.12642 -34.05805 -32.56238 -31.55034 -31.49619 -28.85907 -28.49108 -27.80140 -26.65746 -25.20275 -24.03905 -23.59211 -22.06615 -21.94498 -21.39185 -20.35742 -18.95210 -18.48210 -17.94982 -17.86816 -17.25038 -16.96007 -16.50590 -16.32164 -15.92498 -15.43999 -15.38996 -15.28932 -14.81247 -14.68258 -14.61846 -14.38356 -14.25041 -13.93025 -13.71896 -13.50393 -13.45159 -13.40119 -13.25535 -13.08542 -12.93118 -12.89575 -12.83905 -12.61775 -12.32605 -12.18060 -12.10598 -11.96520 -11.88102 -11.59659 -11.36953 -10.78076 -10.72476 -10.59699 -10.40365 -10.35760 -10.10825 -9.34163 -9.12137 -8.11360 -6.18974 0.93437 1.39553 1.41901 1.44068 1.51073 1.56741 1.70435 2.07235 2.44135 2.86066 3.08722 3.18678 3.51410 3.57480 3.96100 4.00067 4.05990 4.11558 4.20604 4.23147 4.24961 4.33548 4.36122 4.46365 4.49410 4.55808 4.65069 4.72982 4.76276 4.80477 4.83367 4.86568 4.89609 4.91094 4.96099 5.00888 5.03135 5.05533 5.20863 5.23661 5.26908 5.38237 5.47590 5.52105 5.59680 5.62023 5.64766 5.96754 5.98815 6.13752 6.21926 6.29219 6.41392 6.71677 6.91692 7.21796 7.47084 8.96898 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013116 B = 0.002964 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.243486 B = 9445.312632 C = 9828.577288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.375 5.375 3 C 0.088 3.912 4 C -0.253 4.253 5 C 0.224 3.776 6 H 0.109 0.891 7 N -0.624 5.624 8 C 0.295 3.705 9 N -0.564 5.564 10 C 0.084 3.916 11 C -0.089 4.089 12 C 0.047 3.953 13 C -0.535 4.535 14 H 0.047 0.953 15 C 0.017 3.983 16 N -0.915 5.915 17 Si 0.946 3.054 18 H -0.278 1.278 19 H -0.281 1.281 20 H -0.271 1.271 21 C -0.100 4.100 22 C 0.072 3.928 23 C 0.527 3.473 24 O -0.547 6.547 25 C -0.096 4.096 26 C -0.108 4.108 27 C -0.129 4.129 28 C 0.062 3.938 29 N -0.330 5.330 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.213 0.787 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.021 0.979 38 H 0.046 0.954 39 H 0.024 0.976 40 H -0.002 1.002 41 H 0.261 0.739 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.029 0.971 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.048 0.952 49 H 0.043 0.957 50 H 0.074 0.926 51 H 0.101 0.899 52 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.689 -9.782 -13.959 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.156 5.156 3 C -0.060 4.060 4 C -0.266 4.266 5 C 0.121 3.879 6 H 0.127 0.873 7 N -0.359 5.359 8 C 0.085 3.915 9 N -0.293 5.293 10 C -0.044 4.044 11 C -0.127 4.127 12 C 0.029 3.971 13 C -0.573 4.573 14 H 0.065 0.935 15 C -0.181 4.181 16 N -0.554 5.554 17 Si 0.772 3.228 18 H -0.204 1.204 19 H -0.207 1.207 20 H -0.195 1.195 21 C -0.138 4.138 22 C -0.056 4.056 23 C 0.314 3.686 24 O -0.422 6.422 25 C -0.100 4.100 26 C -0.166 4.166 27 C -0.186 4.186 28 C -0.124 4.124 29 N -0.152 5.152 30 H 0.100 0.900 31 H 0.138 0.862 32 H 0.108 0.892 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.065 0.935 39 H 0.043 0.957 40 H 0.016 0.984 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.086 0.914 48 H 0.067 0.933 49 H 0.062 0.938 50 H 0.093 0.907 51 H 0.120 0.880 52 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.644 -10.996 -14.163 25.156 hybrid contribution 0.881 1.408 1.130 2.009 sum -16.764 -9.588 -13.033 23.298 Atomic orbital electron populations 1.22217 0.71817 1.06156 1.04509 1.48810 1.07965 1.03234 1.55572 1.22737 0.89593 0.94879 0.98801 1.19719 0.93873 0.93431 1.19531 1.20756 0.81929 0.93476 0.91716 0.87331 1.51189 1.17650 1.57447 1.09642 1.21981 0.95318 0.92271 0.81880 1.62300 1.55752 1.03225 1.08015 1.21847 0.95730 0.87689 0.99130 1.21366 0.96734 0.97220 0.97412 1.18623 0.94829 0.91510 0.92184 1.21552 1.08531 0.92553 1.34670 0.93493 1.25660 0.96864 0.99844 0.95779 1.70054 1.23432 1.13684 1.48231 0.85728 0.79736 0.78833 0.78479 1.20422 1.20671 1.19527 1.21538 0.98426 0.95548 0.98251 1.22008 0.97925 0.99708 0.85968 1.22937 0.86324 0.76930 0.82380 1.90677 1.24478 1.54324 1.72770 1.22899 0.92188 0.98303 0.96626 1.21442 1.00853 0.98612 0.95654 1.21625 1.03605 0.91355 1.02047 1.23610 0.94851 0.94823 0.99087 1.77350 1.02012 1.09847 1.25956 0.89969 0.86234 0.89206 0.77044 0.91598 0.89308 0.91590 0.96072 0.93537 0.95736 0.98369 0.93033 0.92573 0.93563 0.95239 0.89353 0.89457 0.91378 0.93307 0.93761 0.90742 0.88022 0.81235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 11.47 127.77 1.47 2.04 16 2 N -0.37 -5.54 4.01 -369.54 -1.48 -7.02 16 3 C 0.09 1.15 11.40 83.54 0.95 2.10 16 4 C -0.25 -4.48 4.02 -20.14 -0.08 -4.56 16 5 C 0.22 4.55 3.85 44.21 0.17 4.72 16 6 H 0.11 2.18 7.30 -2.38 -0.02 2.16 16 7 N -0.62 -16.67 1.50 -826.11 -1.24 -17.91 16 8 C 0.30 8.41 7.14 170.81 1.22 9.63 16 9 N -0.56 -20.01 4.91 -908.72 -4.46 -24.47 16 10 C 0.08 3.23 4.34 86.32 0.37 3.60 16 11 C -0.09 -4.29 5.19 30.64 0.16 -4.13 16 12 C 0.05 2.40 2.02 -11.46 -0.02 2.37 16 13 C -0.53 -30.23 8.48 25.60 0.22 -30.01 16 14 H 0.05 2.65 7.76 -2.91 -0.02 2.63 16 15 C 0.02 0.98 5.25 84.66 0.44 1.43 16 16 N -0.91 -52.87 12.15 21.45 0.26 -52.61 16 17 Si 0.95 44.35 29.54 68.60 2.03 46.37 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 21 C -0.10 -4.23 5.32 30.65 0.16 -4.07 16 22 C 0.07 2.48 5.30 86.33 0.46 2.94 16 23 C 0.53 15.84 8.09 87.64 0.71 16.55 16 24 O -0.55 -21.38 18.03 -3.04 -0.05 -21.43 16 25 C -0.10 -1.96 1.44 -52.41 -0.08 -2.03 16 26 C -0.11 -1.77 8.03 71.98 0.58 -1.20 16 27 C -0.13 -2.35 9.14 71.98 0.66 -1.69 16 28 C 0.06 1.29 10.45 85.24 0.89 2.18 16 29 N -0.33 -7.07 12.57 -57.03 -0.72 -7.78 16 30 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.21 1.11 8.06 -2.90 -0.02 1.09 16 34 H 0.07 1.69 7.87 -2.39 -0.02 1.67 16 35 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 36 H 0.07 2.42 5.59 -2.39 -0.01 2.41 16 37 H 0.02 0.81 8.03 -2.39 -0.02 0.79 16 38 H 0.05 2.47 6.97 -2.39 -0.02 2.45 16 39 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.00 -0.10 8.09 -2.39 -0.02 -0.12 16 41 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 42 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 44 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.09 2.57 8.12 -2.39 -0.02 2.55 16 46 H 0.09 1.08 7.87 -2.39 -0.02 1.06 16 47 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 48 H 0.05 0.93 6.86 -2.39 -0.02 0.91 16 49 H 0.04 1.02 7.74 -2.39 -0.02 1.01 16 50 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 52 H 0.17 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -75.33 411.20 3.50 -71.83 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.89 Total: 13.15 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 8.28 Total: -0.14 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -7.64 Total: -109.78 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.05 Total: -21.43 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -75.33 3.50 -71.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808176958.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.864 kcal (2) G-P(sol) polarization free energy of solvation -75.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds